data_Z3H
#
_chem_comp.id Z3H
_chem_comp.name N-[(4R)-3,4-dihydro-2H-1-benzopyran-4-yl]methanesulfonamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H13 N O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-06-22
_chem_comp.pdbx_modified_date 2023-07-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 227.280
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code Z3H
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7G8V
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z3H C10 C1 C 0 1 Y N N N N N 26.904 -36.664 6.560 2.418 0.396 -0.042 C10 Z3H 1
Z3H C13 C2 C 0 1 Y N N N N N 26.528 -39.051 8.000 2.195 -2.363 0.078 C13 Z3H 2
Z3H C15 C3 C 0 1 Y N N N N N 26.933 -36.665 7.955 1.172 -0.193 0.084 C15 Z3H 3
Z3H C01 C4 C 0 1 N N N N N N 29.595 -35.827 10.775 -3.312 1.263 0.434 C01 Z3H 4
Z3H S02 S1 S 0 1 N N N N N N 27.977 -35.176 11.261 -2.599 -0.348 0.004 S02 Z3H 5
Z3H O03 O1 O 0 1 N N N N N N 27.495 -35.869 12.459 -2.280 -1.081 1.179 O03 Z3H 6
Z3H O04 O2 O 0 1 N N N N N N 28.057 -33.784 11.727 -3.326 -0.948 -1.059 O04 Z3H 7
Z3H N05 N1 N 0 1 N N N N N N 26.800 -35.316 10.025 -1.128 0.016 -0.663 N05 Z3H 8
Z3H C06 C5 C 0 1 N N R N N N 27.243 -35.319 8.655 -0.085 0.637 0.158 C06 Z3H 9
Z3H C07 C6 C 0 1 N N N N N N 26.735 -34.141 7.855 0.199 2.049 -0.360 C07 Z3H 10
Z3H C08 C7 C 0 1 N N N N N N 27.349 -34.241 6.483 1.478 2.561 0.313 C08 Z3H 11
Z3H O09 O3 O 0 1 N N N N N N 27.090 -35.443 5.811 2.570 1.744 -0.112 O09 Z3H 12
Z3H C11 C8 C 0 1 Y N N N N N 26.657 -37.875 5.875 3.555 -0.404 -0.105 C11 Z3H 13
Z3H C12 C9 C 0 1 Y N N N N N 26.478 -39.054 6.594 3.441 -1.778 -0.045 C12 Z3H 14
Z3H C14 C10 C 0 1 Y N N N N N 26.761 -37.856 8.690 1.064 -1.572 0.145 C14 Z3H 15
Z3H H1 H1 H 0 1 N N N N N N 26.386 -39.971 8.547 2.105 -3.438 0.125 H1 Z3H 16
Z3H H2 H2 H 0 1 N N N N N N 30.304 -35.708 11.608 -4.294 1.118 0.884 H2 Z3H 17
Z3H H3 H3 H 0 1 N N N N N N 29.500 -36.894 10.523 -2.659 1.773 1.142 H3 Z3H 18
Z3H H4 H4 H 0 1 N N N N N N 29.964 -35.275 9.898 -3.413 1.868 -0.468 H4 Z3H 19
Z3H H5 H5 H 0 1 N N N N N N 26.168 -34.548 10.130 -0.956 -0.181 -1.597 H5 Z3H 20
Z3H H6 H6 H 0 1 N N N N N N 28.339 -35.232 8.669 -0.423 0.692 1.193 H6 Z3H 21
Z3H H7 H7 H 0 1 N N N N N N 27.037 -33.199 8.336 0.338 2.022 -1.441 H7 Z3H 22
Z3H H8 H8 H 0 1 N N N N N N 25.638 -34.179 7.781 -0.635 2.705 -0.113 H8 Z3H 23
Z3H H9 H9 H 0 1 N N N N N N 28.439 -34.135 6.587 1.658 3.595 0.021 H9 Z3H 24
Z3H H10 H10 H 0 1 N N N N N N 26.957 -33.415 5.871 1.373 2.499 1.396 H10 Z3H 25
Z3H H11 H11 H 0 1 N N N N N N 26.607 -37.886 4.796 4.529 0.052 -0.200 H11 Z3H 26
Z3H H12 H12 H 0 1 N N N N N N 26.299 -39.980 6.067 4.326 -2.396 -0.094 H12 Z3H 27
Z3H H13 H13 H 0 1 N N N N N N 26.808 -37.846 9.769 0.092 -2.032 0.241 H13 Z3H 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z3H O09 C08 SING N N 1
Z3H O09 C10 SING N N 2
Z3H C11 C10 DOUB Y N 3
Z3H C11 C12 SING Y N 4
Z3H C08 C07 SING N N 5
Z3H C10 C15 SING Y N 6
Z3H C12 C13 DOUB Y N 7
Z3H C07 C06 SING N N 8
Z3H C15 C06 SING N N 9
Z3H C15 C14 DOUB Y N 10
Z3H C13 C14 SING Y N 11
Z3H C06 N05 SING N N 12
Z3H N05 S02 SING N N 13
Z3H C01 S02 SING N N 14
Z3H S02 O04 DOUB N N 15
Z3H S02 O03 DOUB N N 16
Z3H C13 H1 SING N N 17
Z3H C01 H2 SING N N 18
Z3H C01 H3 SING N N 19
Z3H C01 H4 SING N N 20
Z3H N05 H5 SING N N 21
Z3H C06 H6 SING N N 22
Z3H C07 H7 SING N N 23
Z3H C07 H8 SING N N 24
Z3H C08 H9 SING N N 25
Z3H C08 H10 SING N N 26
Z3H C11 H11 SING N N 27
Z3H C12 H12 SING N N 28
Z3H C14 H13 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z3H SMILES ACDLabs 12.01 CS(=O)(=O)NC1CCOc2ccccc21
Z3H InChI InChI 1.06 InChI=1S/C10H13NO3S/c1-15(12,13)11-9-6-7-14-10-5-3-2-4-8(9)10/h2-5,9,11H,6-7H2,1H3/t9-/m1/s1
Z3H InChIKey InChI 1.06 GLQMCOZZWSNYPN-SECBINFHSA-N
Z3H SMILES_CANONICAL CACTVS 3.385 C[S](=O)(=O)N[C@@H]1CCOc2ccccc12
Z3H SMILES CACTVS 3.385 C[S](=O)(=O)N[CH]1CCOc2ccccc12
Z3H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CS(=O)(=O)N[C@@H]1CCOc2c1cccc2
Z3H SMILES "OpenEye OEToolkits" 2.0.7 CS(=O)(=O)NC1CCOc2c1cccc2
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Z3H "SYSTEMATIC NAME" ACDLabs 12.01 N-[(4R)-3,4-dihydro-2H-1-benzopyran-4-yl]methanesulfonamide
Z3H "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 ~{N}-[(4~{R})-3,4-dihydro-2~{H}-chromen-4-yl]methanesulfonamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z3H 'Create component' 2023-06-22 RCSB
Z3H 'Initial release' 2023-07-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
Z3H C10 C 5.700 -2.498 1
Z3H C13 C 3.000 -0.967 2
Z3H C15 C 5.700 -0.999 3
Z3H C01 C 7.548 3.300 4
Z3H S02 S 8.298 2.002 5
Z3H O03 O 9.597 2.752 6
Z3H O04 O 9.048 0.703 7
Z3H N05 N 6.999 1.252 8
Z3H C06 C 6.999 -0.248 9
Z3H C07 C 8.298 -0.999 10
Z3H C08 C 8.298 -2.498 11
Z3H O09 O 6.999 -3.249 12
Z3H C11 C 4.359 -3.300 13
Z3H C12 C 3.000 -2.530 14
Z3H C14 C 4.359 -0.197 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
Z3H O09 C08 SINGLE NONE 1
Z3H O09 C10 SINGLE NONE 2
Z3H C11 C10 DOUBLE NONE 3
Z3H C11 C12 SINGLE NONE 4
Z3H C08 C07 SINGLE NONE 5
Z3H C10 C15 SINGLE NONE 6
Z3H C12 C13 DOUBLE NONE 7
Z3H C07 C06 SINGLE NONE 8
Z3H C15 C06 SINGLE NONE 9
Z3H C15 C14 DOUBLE NONE 10
Z3H C13 C14 SINGLE NONE 11
Z3H C06 N05 SINGLE BEGINDASH 12
Z3H N05 S02 SINGLE NONE 13
Z3H C01 S02 SINGLE NONE 14
Z3H S02 O04 DOUBLE NONE 15
Z3H S02 O03 DOUBLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
Z3H MurckoScaffold S1 scaffold c1ccc2c(c1)CCCO2 InChI=1S/C9H10O/c1-2-6-9-8(4-1)5-3-7-10-9/h1-2,4,6H,3,5,7H2 VZWXIQHBIQLMPN-UHFFFAOYSA-N
Z3H phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
Z3H tocol F2 fragment c1ccc2c(c1)CCCO2 InChI=1S/C9H10O/c1-2-6-9-8(4-1)5-3-7-10-9/h1-2,4,6H,3,5,7H2 VZWXIQHBIQLMPN-UHFFFAOYSA-N
Z3H Z53825003 F3 fragment CC(NS(C)(=O)=O)c1ccccc1 InChI=1S/C9H13NO2S/c1-8(10-13(2,11)12)9-6-4-3-5-7-9/h3-8,10H,1-2H3 SHEXGLJFVVRUCZ-UHFFFAOYSA-N
Z3H Z382816560 F4 fragment NC(CCO)c1ccccc1 InChI=1S/C9H13NO/c10-9(6-7-11)8-4-2-1-3-5-8/h1-5,9,11H,6-7,10H2 SEQXIQNPMQTBGN-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
Z3H C10 S1 1
Z3H C13 S1 1
Z3H C15 S1 1
Z3H C06 S1 1
Z3H C07 S1 1
Z3H C08 S1 1
Z3H O09 S1 1
Z3H C11 S1 1
Z3H C12 S1 1
Z3H C14 S1 1
Z3H C10 F1 1
Z3H C11 F1 1
Z3H C12 F1 1
Z3H C13 F1 1
Z3H C14 F1 1
Z3H C15 F1 1
Z3H C13 F2 1
Z3H C12 F2 1
Z3H C11 F2 1
Z3H C10 F2 1
Z3H C15 F2 1
Z3H C14 F2 1
Z3H C06 F2 1
Z3H C07 F2 1
Z3H C08 F2 1
Z3H O09 F2 1
Z3H C07 F3 1
Z3H C06 F3 1
Z3H N05 F3 1
Z3H S02 F3 1
Z3H O04 F3 1
Z3H O03 F3 1
Z3H C01 F3 1
Z3H C15 F3 1
Z3H C10 F3 1
Z3H C11 F3 1
Z3H C12 F3 1
Z3H C13 F3 1
Z3H C14 F3 1
Z3H N05 F4 1
Z3H C06 F4 1
Z3H C07 F4 1
Z3H C08 F4 1
Z3H O09 F4 1
Z3H C15 F4 1
Z3H C10 F4 1
Z3H C11 F4 1
Z3H C12 F4 1
Z3H C13 F4 1
Z3H C14 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id Z3H
_pdbe_chem_comp_rdkit_properties.exactmw 227.062
_pdbe_chem_comp_rdkit_properties.amw 227.285
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.400
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 107.632
_pdbe_chem_comp_rdkit_properties.tpsa 55.400
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.542
_pdbe_chem_comp_rdkit_properties.CrippenMR 56.399
_pdbe_chem_comp_rdkit_properties.chi0v 7.897
_pdbe_chem_comp_rdkit_properties.chi1v 5.042
_pdbe_chem_comp_rdkit_properties.chi2v 1.847
_pdbe_chem_comp_rdkit_properties.chi3v 1.847
_pdbe_chem_comp_rdkit_properties.chi4v 1.298
_pdbe_chem_comp_rdkit_properties.chi0n 20.080
_pdbe_chem_comp_rdkit_properties.chi1n 10.049
_pdbe_chem_comp_rdkit_properties.chi2n 1.424
_pdbe_chem_comp_rdkit_properties.chi3n 1.424
_pdbe_chem_comp_rdkit_properties.chi4n 0.920
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.070
_pdbe_chem_comp_rdkit_properties.kappa1 2.985
_pdbe_chem_comp_rdkit_properties.kappa2 3.827
_pdbe_chem_comp_rdkit_properties.kappa3 2.485
_pdbe_chem_comp_rdkit_properties.Phi 0.762
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
Z3H UniChem ZINC ZINC000048903494
Z3H UniChem PubChem 94197081
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
Z3H C10 -2.079 -0.449 0.455 ETKDGv3 1
Z3H C13 -2.555 2.330 0.423 ETKDGv3 2
Z3H C15 -0.935 0.497 0.358 ETKDGv3 3
Z3H C01 3.703 -0.368 -0.482 ETKDGv3 4
Z3H S02 2.501 0.588 -1.383 ETKDGv3 5
Z3H O03 2.861 0.562 -2.842 ETKDGv3 6
Z3H O04 2.527 2.011 -0.898 ETKDGv3 7
Z3H N05 0.904 -0.075 -1.185 ETKDGv3 8
Z3H C06 0.476 -0.047 0.230 ETKDGv3 9
Z3H C07 0.550 -1.472 0.817 ETKDGv3 10
Z3H C08 -0.547 -2.372 0.232 ETKDGv3 11
Z3H O09 -1.840 -1.825 0.489 ETKDGv3 12
Z3H C11 -3.331 0.018 0.540 ETKDGv3 13
Z3H C12 -3.580 1.475 0.522 ETKDGv3 14
Z3H C14 -1.170 1.820 0.333 ETKDGv3 15
Z3H H1 -2.737 3.397 0.408 ETKDGv3 16
Z3H H2 4.721 0.016 -0.701 ETKDGv3 17
Z3H H3 3.512 -0.285 0.608 ETKDGv3 18
Z3H H4 3.639 -1.431 -0.791 ETKDGv3 19
Z3H H5 0.272 0.508 -1.781 ETKDGv3 20
Z3H H6 1.143 0.597 0.847 ETKDGv3 21
Z3H H7 0.425 -1.423 1.921 ETKDGv3 22
Z3H H8 1.543 -1.922 0.610 ETKDGv3 23
Z3H H9 -0.484 -3.383 0.686 ETKDGv3 24
Z3H H10 -0.405 -2.474 -0.865 ETKDGv3 25
Z3H H11 -4.165 -0.667 0.621 ETKDGv3 26
Z3H H12 -4.594 1.848 0.588 ETKDGv3 27
Z3H H13 -0.352 2.524 0.241 ETKDGv3 28
#