data_Z19
#
_chem_comp.id Z19
_chem_comp.name 1H-indazole-3-carbohydrazide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H8 N4 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-03-25
_chem_comp.pdbx_modified_date 2012-08-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 176.175
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code Z19
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3R8M
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z19 N1 N1 N 0 1 Y N N N N N -91.116 -82.003 -86.705 0.401 -1.701 0.001 N1 Z19 1
Z19 N2 N2 N 0 1 Y N N N N N -92.029 -81.486 -87.568 -0.843 -2.017 -0.004 N2 Z19 2
Z19 C3 C3 C 0 1 Y N N N N N -92.888 -80.568 -86.990 -1.639 -0.902 -0.004 C3 Z19 3
Z19 C4 C4 C 0 1 Y N N N N N -92.454 -80.507 -85.610 -0.764 0.202 0.002 C4 Z19 4
Z19 C5 C5 C 0 1 Y N N N N N -91.344 -81.439 -85.536 0.577 -0.397 0.005 C5 Z19 5
Z19 C6 C6 C 0 1 N N N N N N -90.582 -81.695 -84.268 1.865 0.321 0.012 C6 Z19 6
Z19 N7 N7 N 0 1 N N N N N N -89.593 -82.585 -84.370 3.022 -0.371 0.013 N7 Z19 7
Z19 N8 N8 N 0 1 N N N N N N -88.818 -82.923 -83.268 4.215 0.294 0.019 N8 Z19 8
Z19 O9 O9 O 0 1 N N N N N N -90.866 -81.120 -83.211 1.883 1.537 0.016 O9 Z19 9
Z19 C10 C10 C 0 1 Y N N N N N -93.978 -79.784 -87.485 -3.013 -0.680 -0.008 C10 Z19 10
Z19 C11 C11 C 0 1 Y N N N N N -94.667 -78.904 -86.590 -3.493 0.600 -0.006 C11 Z19 11
Z19 C12 C12 C 0 1 Y N N N N N -94.264 -78.821 -85.219 -2.628 1.687 0.000 C12 Z19 12
Z19 C13 C13 C 0 1 Y N N N N N -93.168 -79.614 -84.732 -1.275 1.497 0.005 C13 Z19 13
Z19 HN2 HN2 H 0 1 N N N N N N -92.076 -81.745 -88.533 -1.176 -2.928 -0.008 HN2 Z19 14
Z19 HN7 HN7 H 0 1 N N N N N N -89.407 -83.015 -85.253 3.007 -1.340 0.010 HN7 Z19 15
Z19 HN8 HN8 H 0 1 N N N N N N -88.133 -83.600 -83.537 4.989 -0.352 0.020 HN8 Z19 16
Z19 HN8A HN8A H 0 0 N N N N N N -88.360 -82.105 -82.920 4.277 0.933 -0.760 HN8A Z19 17
Z19 H10 H10 H 0 1 N N N N N N -94.277 -79.855 -88.520 -3.697 -1.515 -0.013 H10 Z19 18
Z19 H11 H11 H 0 1 N N N N N N -95.490 -78.304 -86.949 -4.560 0.768 -0.009 H11 Z19 19
Z19 H12 H12 H 0 1 N N N N N N -94.787 -78.158 -84.546 -3.029 2.690 0.001 H12 Z19 20
Z19 H13 H13 H 0 1 N N N N N N -92.876 -79.540 -83.695 -0.606 2.345 0.009 H13 Z19 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z19 N1 N2 SING Y N 1
Z19 N1 C5 DOUB Y N 2
Z19 N2 C3 SING Y N 3
Z19 C3 C4 DOUB Y N 4
Z19 C3 C10 SING Y N 5
Z19 C4 C5 SING Y N 6
Z19 C4 C13 SING Y N 7
Z19 C5 C6 SING N N 8
Z19 C6 N7 SING N N 9
Z19 C6 O9 DOUB N N 10
Z19 N7 N8 SING N N 11
Z19 C10 C11 DOUB Y N 12
Z19 C11 C12 SING Y N 13
Z19 C12 C13 DOUB Y N 14
Z19 N2 HN2 SING N N 15
Z19 N7 HN7 SING N N 16
Z19 N8 HN8 SING N N 17
Z19 N8 HN8A SING N N 18
Z19 C10 H10 SING N N 19
Z19 C11 H11 SING N N 20
Z19 C12 H12 SING N N 21
Z19 C13 H13 SING N N 22
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z19 SMILES ACDLabs 12.01 O=C(c2nnc1ccccc12)NN
Z19 SMILES_CANONICAL CACTVS 3.370 NNC(=O)c1n[nH]c2ccccc12
Z19 SMILES CACTVS 3.370 NNC(=O)c1n[nH]c2ccccc12
Z19 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 c1ccc2c(c1)c(n[nH]2)C(=O)NN
Z19 SMILES "OpenEye OEToolkits" 1.7.0 c1ccc2c(c1)c(n[nH]2)C(=O)NN
Z19 InChI InChI 1.03 InChI=1S/C8H8N4O/c9-10-8(13)7-5-3-1-2-4-6(5)11-12-7/h1-4H,9H2,(H,10,13)(H,11,12)
Z19 InChIKey InChI 1.03 JOUPSJAGJHYWLM-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Z19 "SYSTEMATIC NAME" ACDLabs 12.01 1H-indazole-3-carbohydrazide
Z19 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 1H-indazole-3-carbohydrazide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z19 'Create component' 2011-03-25 RCSB
Z19 'Modify aromatic_flag' 2011-06-04 RCSB
Z19 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
Z19 N1 N 7.893 -1.485 1
Z19 N2 N 7.018 -2.692 2
Z19 C3 C 5.598 -2.235 3
Z19 C4 C 5.598 -0.735 4
Z19 C5 C 7.018 -0.278 5
Z19 C6 C 7.483 1.148 6
Z19 N7 N 8.951 1.458 7
Z19 N8 N 9.417 2.883 8
Z19 O9 O 6.482 2.265 9
Z19 C10 C 4.299 -2.985 10
Z19 C11 C 3.000 -2.235 11
Z19 C12 C 3.000 -0.735 12
Z19 C13 C 4.299 0.015 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
Z19 N1 N2 SINGLE NONE 1
Z19 N1 C5 DOUBLE NONE 2
Z19 N2 C3 SINGLE NONE 3
Z19 C3 C4 DOUBLE NONE 4
Z19 C3 C10 SINGLE NONE 5
Z19 C4 C5 SINGLE NONE 6
Z19 C4 C13 SINGLE NONE 7
Z19 C5 C6 SINGLE NONE 8
Z19 C6 N7 SINGLE NONE 9
Z19 C6 O9 DOUBLE NONE 10
Z19 N7 N8 SINGLE NONE 11
Z19 C10 C11 DOUBLE NONE 12
Z19 C11 C12 SINGLE NONE 13
Z19 C12 C13 DOUBLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
Z19 MurckoScaffold S1 scaffold 'c1ccc2[nH]ncc2c1' InChI=1S/C7H6N2/c1-2-4-7-6(3-1)5-8-9-7/h1-5H,(H,8,9) BAXOFTOLAUCFNW-UHFFFAOYSA-N
Z19 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
Z19 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
Z19 pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
Z19 N1 S1 1
Z19 N2 S1 1
Z19 C3 S1 1
Z19 C4 S1 1
Z19 C5 S1 1
Z19 C10 S1 1
Z19 C11 S1 1
Z19 C12 S1 1
Z19 C13 S1 1
Z19 N7 F1 1
Z19 C6 F1 1
Z19 O9 F1 1
Z19 C5 F1 1
Z19 C3 F2 1
Z19 C4 F2 1
Z19 C13 F2 1
Z19 C12 F2 1
Z19 C11 F2 1
Z19 C10 F2 1
Z19 C3 F3 1
Z19 C4 F3 1
Z19 C5 F3 1
Z19 N1 F3 1
Z19 N2 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id Z19
_pdbe_chem_comp_rdkit_properties.exactmw 176.070
_pdbe_chem_comp_rdkit_properties.amw 176.179
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 85.369
_pdbe_chem_comp_rdkit_properties.tpsa 83.800
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.317
_pdbe_chem_comp_rdkit_properties.CrippenMR 45.275
_pdbe_chem_comp_rdkit_properties.chi0v 6.197
_pdbe_chem_comp_rdkit_properties.chi1v 3.275
_pdbe_chem_comp_rdkit_properties.chi2v 1.448
_pdbe_chem_comp_rdkit_properties.chi3v 1.448
_pdbe_chem_comp_rdkit_properties.chi4v 0.899
_pdbe_chem_comp_rdkit_properties.chi0n 14.197
_pdbe_chem_comp_rdkit_properties.chi1n 7.064
_pdbe_chem_comp_rdkit_properties.chi2n 1.448
_pdbe_chem_comp_rdkit_properties.chi3n 1.448
_pdbe_chem_comp_rdkit_properties.chi4n 0.899
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.880
_pdbe_chem_comp_rdkit_properties.kappa1 2.813
_pdbe_chem_comp_rdkit_properties.kappa2 2.872
_pdbe_chem_comp_rdkit_properties.kappa3 1.147
_pdbe_chem_comp_rdkit_properties.Phi 0.621
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
Z19 UniChem ZINC ZINC000000081541
Z19 UniChem BRENDA 72004
Z19 UniChem 'EPA CompTox Dashboard' DTXSID70369474
Z19 UniChem eMolecules 5823173
Z19 UniChem SureChEMBL SCHEMBL2021679
Z19 UniChem PubChem 2727853
Z19 UniChem Mcule MCULE-4254058987
Z19 UniChem Nikkaji J1.421.824F
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
Z19 N1 0.542 -2.269 0.176 ETKDGv3 1
Z19 N2 -0.825 -2.415 0.447 ETKDGv3 2
Z19 C3 -1.387 -1.117 0.401 ETKDGv3 3
Z19 C4 -0.448 -0.234 0.129 ETKDGv3 4
Z19 C5 0.794 -1.007 -0.002 ETKDGv3 5
Z19 C6 2.143 -0.498 -0.297 ETKDGv3 6
Z19 N7 2.521 0.839 0.057 ETKDGv3 7
Z19 N8 3.745 1.390 -0.356 ETKDGv3 8
Z19 O9 2.985 -1.265 -0.836 ETKDGv3 9
Z19 C10 -2.808 -0.742 0.485 ETKDGv3 10
Z19 C11 -3.134 0.545 0.266 ETKDGv3 11
Z19 C12 -2.079 1.544 -0.076 ETKDGv3 12
Z19 C13 -0.787 1.174 -0.156 ETKDGv3 13
Z19 HN2 -1.321 -3.323 0.588 ETKDGv3 14
Z19 HN7 1.911 1.405 0.686 ETKDGv3 15
Z19 HN8 3.766 1.369 -1.401 ETKDGv3 16
Z19 HN8A 4.510 0.770 -0.005 ETKDGv3 17
Z19 H10 -3.566 -1.480 0.711 ETKDGv3 18
Z19 H11 -4.169 0.856 0.319 ETKDGv3 19
Z19 H12 -2.360 2.568 -0.283 ETKDGv3 20
Z19 H13 -0.032 1.889 -0.450 ETKDGv3 21
#