data_XRF
#
_chem_comp.id XRF
_chem_comp.name
1-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-L-erythro-pentofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H17 N2 O14 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-03-09
_chem_comp.pdbx_modified_date 2022-02-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 482.168
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XRF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7LSK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XRF N N1 N 0 1 N N N N N N -0.045 -45.710 132.178 -4.804 0.457 -0.498 N XRF 1
XRF C C1 C 0 1 N N N N N N -2.770 -43.408 133.440 -4.333 3.597 1.477 C XRF 2
XRF O O1 O 0 1 N N N N N N 0.020 -47.988 131.993 -6.602 -0.356 -1.501 O XRF 3
XRF C1 C2 C 0 1 N N N N N N -2.000 -44.635 133.050 -4.958 2.501 0.653 C1 XRF 4
XRF C2 C3 C 0 1 N N N N N N -0.755 -44.590 132.552 -4.221 1.444 0.250 C2 XRF 5
XRF C3 C4 C 0 1 N N N N N N -0.583 -46.973 132.305 -6.104 0.532 -0.836 C3 XRF 6
XRF C4 C5 C 0 1 N N N N N N -2.624 -45.930 133.209 -6.325 2.567 0.289 C4 XRF 7
XRF C5 C6 C 0 1 N N S N N N 1.318 -45.588 131.619 -4.004 -0.687 -0.940 C5 XRF 8
XRF C6 C7 C 0 1 N N N N N N 2.339 -45.029 132.596 -4.597 -2.003 -0.390 C6 XRF 9
XRF C7 C8 C 0 1 N N R N N N 3.222 -44.132 131.737 -3.358 -2.864 -0.058 C7 XRF 10
XRF C8 C9 C 0 1 N N S N N N 2.272 -43.669 130.641 -2.162 -1.967 -0.447 C8 XRF 11
XRF C9 C10 C 0 1 N N N N N N 1.609 -42.350 130.932 -1.013 -2.151 0.546 C9 XRF 12
XRF N1 N2 N 0 1 N N N N N N -1.854 -47.007 132.818 -6.862 1.575 -0.449 N1 XRF 13
XRF O1 O2 O 0 1 N N N N N N -3.751 -46.115 133.664 -7.009 3.511 0.640 O1 XRF 14
XRF O10 O3 O 0 1 N N N N N N -0.038 -36.473 126.364 6.046 2.792 -1.852 O10 XRF 15
XRF O11 O4 O 0 1 N N N N N N 0.289 -38.933 125.906 7.199 0.753 -0.912 O11 XRF 16
XRF O12 O5 O 0 1 N N N N N N 1.524 -37.861 127.782 6.320 2.448 0.739 O12 XRF 17
XRF O13 O6 O 0 1 N N N N N N 4.338 -44.824 131.180 -3.360 -4.064 -0.834 O13 XRF 18
XRF O2 O7 O 0 1 N N N N N N 1.265 -44.696 130.516 -2.675 -0.618 -0.378 O2 XRF 19
XRF O3 O8 O 0 1 N N N N N N 0.719 -42.069 129.843 0.122 -1.404 0.105 O3 XRF 20
XRF O4 O9 O 0 1 N N N N N N 1.128 -42.530 127.375 2.000 -2.750 1.120 O4 XRF 21
XRF O5 O10 O 0 1 N N N N N N 2.261 -40.550 128.589 1.291 -0.655 2.337 O5 XRF 22
XRF O6 O11 O 0 1 N N N N N N -0.230 -40.577 128.301 2.604 -0.539 0.062 O6 XRF 23
XRF O7 O12 O 0 1 N N N N N N 0.405 -38.917 130.105 4.810 -1.726 -0.736 O7 XRF 24
XRF O8 O13 O 0 1 N N N N N N -2.048 -39.624 129.745 4.699 -0.506 1.470 O8 XRF 25
XRF O9 O14 O 0 1 N N N N N N -0.868 -38.234 128.015 4.695 0.898 -0.627 O9 XRF 26
XRF P P1 P 0 1 N N N N N N 1.066 -41.488 128.423 1.515 -1.367 0.910 P XRF 27
XRF P1 P2 P 0 1 N N N N N N -0.671 -39.316 129.164 4.213 -0.469 0.073 P1 XRF 28
XRF P2 P3 P 0 1 N N N N N N 0.241 -37.812 126.952 6.090 1.702 -0.668 P2 XRF 29
XRF H1 H1 H 0 1 N N N N N N -3.760 -43.701 133.819 -5.083 4.356 1.701 H1 XRF 30
XRF H2 H2 H 0 1 N N N N N N -2.223 -42.866 134.225 -3.951 3.179 2.408 H2 XRF 31
XRF H3 H3 H 0 1 N N N N N N -2.892 -42.757 132.562 -3.514 4.050 0.919 H3 XRF 32
XRF H4 H4 H 0 1 N N N N N N -0.284 -43.625 132.438 -3.177 1.376 0.518 H4 XRF 33
XRF H5 H5 H 0 1 N N N N N N 1.660 -46.578 131.284 -3.956 -0.718 -2.028 H5 XRF 34
XRF H6 H6 H 0 1 N N N N N N 1.844 -44.447 133.388 -5.181 -1.812 0.511 H6 XRF 35
XRF H7 H7 H 0 1 N N N N N N 2.929 -45.839 133.050 -5.212 -2.490 -1.146 H7 XRF 36
XRF H8 H8 H 0 1 N N N N N N 3.552 -43.265 132.329 -3.330 -3.099 1.006 H8 XRF 37
XRF H9 H9 H 0 1 N N N N N N 2.835 -43.585 129.700 -1.829 -2.197 -1.459 H9 XRF 38
XRF H10 H10 H 0 1 N N N N N N 2.367 -41.557 131.012 -1.322 -1.797 1.529 H10 XRF 39
XRF H11 H11 H 0 1 N N N N N N 1.043 -42.413 131.873 -0.751 -3.208 0.606 H11 XRF 40
XRF H12 H12 H 0 1 N N N N N N -2.269 -47.911 132.920 -7.798 1.612 -0.701 H12 XRF 41
XRF H13 H13 H 0 1 N N N N N N -0.139 -36.555 125.423 6.855 3.315 -1.936 H13 XRF 42
XRF H14 H14 H 0 1 N N N N N N 2.074 -38.572 127.474 5.630 3.086 0.965 H14 XRF 43
XRF H15 H15 H 0 1 N N N N N N 4.918 -45.104 131.878 -4.123 -4.637 -0.671 H15 XRF 44
XRF H16 H16 H 0 1 N N N N N N 2.931 -40.775 127.954 0.973 0.255 2.276 H16 XRF 45
XRF H17 H17 H 0 1 N N N N N N 0.064 -38.909 130.992 4.532 -1.766 -1.662 H17 XRF 46
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XRF O11 P2 DOUB N N 1
XRF O10 P2 SING N N 2
XRF P2 O12 SING N N 3
XRF P2 O9 SING N N 4
XRF O4 P DOUB N N 5
XRF O9 P1 SING N N 6
XRF O6 P SING N N 7
XRF O6 P1 SING N N 8
XRF P O5 SING N N 9
XRF P O3 SING N N 10
XRF P1 O8 DOUB N N 11
XRF P1 O7 SING N N 12
XRF O3 C9 SING N N 13
XRF O2 C8 SING N N 14
XRF O2 C5 SING N N 15
XRF C8 C9 SING N N 16
XRF C8 C7 SING N N 17
XRF O13 C7 SING N N 18
XRF C5 N SING N N 19
XRF C5 C6 SING N N 20
XRF C7 C6 SING N N 21
XRF O C3 DOUB N N 22
XRF N C3 SING N N 23
XRF N C2 SING N N 24
XRF C3 N1 SING N N 25
XRF C2 C1 DOUB N N 26
XRF N1 C4 SING N N 27
XRF C1 C4 SING N N 28
XRF C1 C SING N N 29
XRF C4 O1 DOUB N N 30
XRF C H1 SING N N 31
XRF C H2 SING N N 32
XRF C H3 SING N N 33
XRF C2 H4 SING N N 34
XRF C5 H5 SING N N 35
XRF C6 H6 SING N N 36
XRF C6 H7 SING N N 37
XRF C7 H8 SING N N 38
XRF C8 H9 SING N N 39
XRF C9 H10 SING N N 40
XRF C9 H11 SING N N 41
XRF N1 H12 SING N N 42
XRF O10 H13 SING N N 43
XRF O12 H14 SING N N 44
XRF O13 H15 SING N N 45
XRF O5 H16 SING N N 46
XRF O7 H17 SING N N 47
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XRF SMILES ACDLabs 12.01 O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC1OC(CC1O)N1C=C(C)C(=O)NC1=O
XRF InChI InChI 1.03 InChI=1S/C10H17N2O14P3/c1-5-3-12(10(15)11-9(5)14)8-2-6(13)7(24-8)4-23-28(19,20)26-29(21,22)25-27(16,17)18/h3,6-8,13H,2,4H2,1H3,(H,19,20)(H,21,22)(H,11,14,15)(H2,16,17,18)/t6-,7+,8+/m1/s1
XRF InChIKey InChI 1.03 NHVNXKFIZYSCEB-CSMHCCOUSA-N
XRF SMILES_CANONICAL CACTVS 3.385 CC1=CN([C@@H]2C[C@@H](O)[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O
XRF SMILES CACTVS 3.385 CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O
XRF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC1=CN(C(=O)NC1=O)[C@@H]2C[C@H]([C@@H](O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O
XRF SMILES "OpenEye OEToolkits" 2.0.7 CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XRF "SYSTEMATIC NAME" ACDLabs 12.01 1-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-L-erythro-pentofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione
XRF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{S},3~{R},5~{S})-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id XRF
_pdbx_chem_comp_synonyms.name L-dTTP
_pdbx_chem_comp_synonyms.provenance AUTHOR
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XRF 'Create component' 2021-03-09 RCSB
XRF 'Initial release' 2022-02-23 RCSB
#
_pdbe_chem_comp_synonyms.comp_id XRF
_pdbe_chem_comp_synonyms.name L-dTTP
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
XRF N N 5.598 2.453 1
XRF C C 3.000 5.453 2
XRF O O 8.196 2.453 3
XRF C1 C 4.299 4.703 4
XRF C2 C 4.299 3.203 5
XRF C3 C 6.897 3.203 6
XRF C4 C 5.598 5.453 7
XRF C5 C 5.598 0.953 8
XRF C6 C 4.385 0.071 9
XRF C7 C 4.848 -1.356 10
XRF C8 C 6.348 -1.356 11
XRF C9 C 7.230 -2.569 12
XRF N1 N 6.897 4.703 13
XRF O1 O 5.598 6.953 14
XRF O10 O 15.564 -4.858 15
XRF O11 O 15.232 -6.953 16
XRF O12 O 13.136 -6.621 17
XRF O13 O 3.966 -2.569 18
XRF O2 O 6.812 0.071 19
XRF O3 O 8.722 -2.412 20
XRF O4 O 10.817 -2.744 21
XRF O5 O 8.390 -4.508 22
XRF O6 O 10.485 -4.839 23
XRF O7 O 11.820 -3.191 24
XRF O8 O 12.133 -6.174 25
XRF O9 O 13.469 -4.526 26
XRF P P 9.603 -3.626 27
XRF P1 P 11.977 -4.683 28
XRF P2 P 14.350 -5.739 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
XRF O11 P2 DOUBLE NONE 1
XRF O10 P2 SINGLE NONE 2
XRF P2 O12 SINGLE NONE 3
XRF P2 O9 SINGLE NONE 4
XRF O4 P DOUBLE NONE 5
XRF O9 P1 SINGLE NONE 6
XRF O6 P SINGLE NONE 7
XRF O6 P1 SINGLE NONE 8
XRF P O5 SINGLE BEGINDASH 9
XRF P O3 SINGLE NONE 10
XRF P1 O8 DOUBLE NONE 11
XRF P1 O7 SINGLE BEGINDASH 12
XRF O3 C9 SINGLE NONE 13
XRF O2 C8 SINGLE NONE 14
XRF O2 C5 SINGLE NONE 15
XRF C8 C9 SINGLE BEGINWEDGE 16
XRF C8 C7 SINGLE NONE 17
XRF C7 O13 SINGLE BEGINDASH 18
XRF C5 N SINGLE BEGINWEDGE 19
XRF C5 C6 SINGLE NONE 20
XRF C7 C6 SINGLE NONE 21
XRF O C3 DOUBLE NONE 22
XRF N C3 SINGLE NONE 23
XRF N C2 SINGLE NONE 24
XRF C3 N1 SINGLE NONE 25
XRF C2 C1 DOUBLE NONE 26
XRF N1 C4 SINGLE NONE 27
XRF C1 C4 SINGLE NONE 28
XRF C1 C SINGLE NONE 29
XRF C4 O1 DOUBLE NONE 30
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
XRF MurckoScaffold S1 scaffold 'O=c1ccn([C@@H]2CCCO2)c(=O)[nH]1' InChI=1S/C8H10N2O3/c11-6-3-4-10(8(12)9-6)7-2-1-5-13-7/h3-4,7H,1-2,5H2,(H,9,11,12)/t7-/m0/s1 CWWIKVUHBBTKHC-ZETCQYMHSA-N
XRF deoxyribose F1 fragment 'OCC1OC[CH2]C1O' InChI=1S/C5H10O3/c6-3-5-4(7)1-2-8-5/h4-7H,1-3H2 NSMOSDAEGJTOIQ-UHFFFAOYSA-N
XRF phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
XRF pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
XRF N S1 1
XRF O S1 1
XRF C1 S1 1
XRF C2 S1 1
XRF C3 S1 1
XRF C4 S1 1
XRF C5 S1 1
XRF C6 S1 1
XRF C7 S1 1
XRF C8 S1 1
XRF N1 S1 1
XRF O1 S1 1
XRF O2 S1 1
XRF C5 F1 1
XRF C6 F1 1
XRF C7 F1 1
XRF O13 F1 1
XRF C8 F1 1
XRF O2 F1 1
XRF C9 F1 1
XRF O3 F1 1
XRF O10 F2 1
XRF P2 F2 1
XRF O11 F2 1
XRF O12 F2 1
XRF O9 F2 1
XRF O3 F2 2
XRF P F2 2
XRF O4 F2 2
XRF O6 F2 2
XRF O5 F2 2
XRF O6 F2 3
XRF P1 F2 3
XRF O8 F2 3
XRF O9 F2 3
XRF O7 F2 3
XRF C1 F3 1
XRF C2 F3 1
XRF N F3 1
XRF C3 F3 1
XRF N1 F3 1
XRF C4 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id XRF
_pdbe_chem_comp_rdkit_properties.exactmw 481.989
_pdbe_chem_comp_rdkit_properties.amw 482.168
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 16
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 15
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 46
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 19
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.600
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 185.038
_pdbe_chem_comp_rdkit_properties.tpsa 244.140
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.582
_pdbe_chem_comp_rdkit_properties.CrippenMR 90.360
_pdbe_chem_comp_rdkit_properties.chi0v 15.635
_pdbe_chem_comp_rdkit_properties.chi1v 10.665
_pdbe_chem_comp_rdkit_properties.chi2v 5.820
_pdbe_chem_comp_rdkit_properties.chi3v 5.820
_pdbe_chem_comp_rdkit_properties.chi4v 4.078
_pdbe_chem_comp_rdkit_properties.chi0n 29.952
_pdbe_chem_comp_rdkit_properties.chi1n 14.272
_pdbe_chem_comp_rdkit_properties.chi2n 2.305
_pdbe_chem_comp_rdkit_properties.chi3n 2.305
_pdbe_chem_comp_rdkit_properties.chi4n 1.403
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.990
_pdbe_chem_comp_rdkit_properties.kappa1 9.653
_pdbe_chem_comp_rdkit_properties.kappa2 8.632
_pdbe_chem_comp_rdkit_properties.kappa3 7.034
_pdbe_chem_comp_rdkit_properties.Phi 2.873
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
XRF UniChem ChEMBL CHEMBL1674
XRF UniChem PDBe XRF
XRF UniChem ZINC ZINC000013507072
XRF UniChem 'PubChem TPHARMA' 15730153
XRF UniChem BRENDA 13406
XRF UniChem BRENDA 127885
XRF UniChem PubChem 472333
XRF UniChem Nikkaji J830.302I
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
XRF N -3.438 -1.057 -0.198 ETKDGv3 1
XRF C -2.757 2.347 -1.788 ETKDGv3 2
XRF O -5.472 -2.051 0.439 ETKDGv3 3
XRF C1 -3.481 1.143 -1.250 ETKDGv3 4
XRF C2 -2.786 0.108 -0.751 ETKDGv3 5
XRF C3 -4.876 -1.080 -0.100 ETKDGv3 6
XRF C4 -4.957 1.132 -1.188 ETKDGv3 7
XRF C5 -2.629 -2.145 0.377 ETKDGv3 8
XRF C6 -2.155 -1.778 1.780 ETKDGv3 9
XRF C7 -0.679 -1.562 1.612 ETKDGv3 10
XRF C8 -0.363 -2.386 0.367 ETKDGv3 11
XRF C9 0.816 -1.818 -0.431 ETKDGv3 12
XRF N1 -5.634 0.014 -0.615 ETKDGv3 13
XRF O1 -5.625 2.106 -1.629 ETKDGv3 14
XRF O10 6.901 2.750 -0.150 ETKDGv3 15
XRF O11 5.490 1.232 -1.724 ETKDGv3 16
XRF O12 4.611 3.673 -1.362 ETKDGv3 17
XRF O13 0.020 -2.034 2.735 ETKDGv3 18
XRF O2 -1.512 -2.408 -0.448 ETKDGv3 19
XRF O3 1.986 -1.863 0.352 ETKDGv3 20
XRF O4 3.558 -2.136 -1.733 ETKDGv3 21
XRF O5 4.666 -1.143 0.397 ETKDGv3 22
XRF O6 2.875 0.323 -1.172 ETKDGv3 23
XRF O7 2.000 0.779 1.437 ETKDGv3 24
XRF O8 2.206 2.696 -0.298 ETKDGv3 25
XRF O9 4.467 1.742 0.660 ETKDGv3 26
XRF P 3.273 -1.219 -0.565 ETKDGv3 27
XRF P1 2.879 1.413 0.136 ETKDGv3 28
XRF P2 5.354 2.315 -0.677 ETKDGv3 29
XRF H1 -2.684 3.119 -0.993 ETKDGv3 30
XRF H2 -1.734 2.085 -2.132 ETKDGv3 31
XRF H3 -3.305 2.772 -2.656 ETKDGv3 32
XRF H4 -1.704 0.149 -0.763 ETKDGv3 33
XRF H5 -3.229 -3.080 0.428 ETKDGv3 34
XRF H6 -2.351 -2.628 2.473 ETKDGv3 35
XRF H7 -2.653 -0.867 2.179 ETKDGv3 36
XRF H8 -0.489 -0.475 1.443 ETKDGv3 37
XRF H9 -0.125 -3.434 0.659 ETKDGv3 38
XRF H10 0.574 -0.774 -0.731 ETKDGv3 39
XRF H11 0.938 -2.440 -1.347 ETKDGv3 40
XRF H12 -6.678 0.002 -0.560 ETKDGv3 41
XRF H13 6.745 3.402 0.578 ETKDGv3 42
XRF H14 4.587 4.343 -0.633 ETKDGv3 43
XRF H15 0.901 -1.579 2.734 ETKDGv3 44
XRF H16 4.333 -1.116 1.329 ETKDGv3 45
XRF H17 2.134 1.427 2.174 ETKDGv3 46
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