data_XO4
#
_chem_comp.id XO4
_chem_comp.name
(5S)-5-butyl-4-({1-[(4-fluorophenyl)methyl]-1H-imidazol-5-yl}methyl)-1-[3-(trifluoromethoxy)phenyl]piperazin-2-one
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H28 F4 N4 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-12-22
_chem_comp.pdbx_modified_date 2022-11-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 504.520
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XO4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7L40
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XO4 C10 C1 C 0 1 N N N N N N 36.835 -36.630 -3.799 0.744 -2.735 -1.495 C10 XO4 1
XO4 C13 C2 C 0 1 Y N N N N N 37.517 -33.367 -5.139 2.801 -0.546 -1.468 C13 XO4 2
XO4 C20 C3 C 0 1 Y N N N N N 34.915 -34.381 -2.004 3.721 3.578 -1.051 C20 XO4 3
XO4 C21 C4 C 0 1 Y N N N N N 33.888 -35.314 -1.926 4.235 4.315 -0.001 C21 XO4 4
XO4 C22 C5 C 0 1 Y N N N N N 32.952 -35.434 -2.974 3.750 4.123 1.282 C22 XO4 5
XO4 C24 C6 C 0 1 Y N N N N N 33.057 -34.607 -4.116 2.750 3.193 1.511 C24 XO4 6
XO4 C26 C7 C 0 1 Y N N N N N 33.788 -38.550 -5.464 -2.544 -1.521 -0.126 C26 XO4 7
XO4 C28 C8 C 0 1 Y N N N N N 31.421 -38.911 -5.879 -4.236 0.158 0.158 C28 XO4 8
XO4 C01 C9 C 0 1 N N N N N N 38.272 -39.088 -9.933 5.155 -3.961 3.099 C01 XO4 9
XO4 C02 C10 C 0 1 N N N N N N 38.518 -38.640 -8.476 3.907 -3.085 3.221 C02 XO4 10
XO4 C03 C11 C 0 1 N N N N N N 37.400 -37.718 -7.916 3.036 -3.262 1.975 C03 XO4 11
XO4 C04 C12 C 0 1 N N N N N N 37.691 -37.195 -6.507 1.788 -2.386 2.097 C04 XO4 12
XO4 C05 C13 C 0 1 N N S N N N 36.641 -36.039 -6.033 0.858 -2.657 0.912 C05 XO4 13
XO4 C06 C14 C 0 1 N N N N N N 35.241 -36.566 -6.169 -0.408 -1.816 1.054 C06 XO4 14
XO4 C08 C15 C 0 1 N N N N N N 35.665 -37.699 -3.977 -0.682 -2.286 -1.344 C08 XO4 15
XO4 C12 C16 C 0 1 N N N N N N 37.865 -34.806 -4.589 1.781 -0.840 -0.399 C12 XO4 16
XO4 C14 C17 C 0 1 Y N N N N N 37.908 -32.853 -6.392 3.731 -1.395 -1.945 C14 XO4 17
XO4 C16 C18 C 0 1 Y N N N N N 36.721 -31.326 -5.366 3.983 0.466 -3.008 C16 XO4 18
XO4 C18 C19 C 0 1 N N N N N N 36.184 -32.529 -3.175 2.160 1.850 -1.968 C18 XO4 19
XO4 C19 C20 C 0 1 Y N N N N N 35.032 -33.555 -3.146 2.719 2.653 -0.822 C19 XO4 20
XO4 C25 C21 C 0 1 Y N N N N N 34.097 -33.666 -4.206 2.238 2.457 0.459 C25 XO4 21
XO4 C27 C22 C 0 1 Y N N N N N 32.498 -38.053 -5.624 -2.898 -0.200 0.111 C27 XO4 22
XO4 C29 C23 C 0 1 Y N N N N N 31.654 -40.293 -5.941 -5.219 -0.804 -0.032 C29 XO4 23
XO4 C30 C24 C 0 1 Y N N N N N 32.949 -40.801 -5.765 -4.864 -2.118 -0.274 C30 XO4 24
XO4 C31 C25 C 0 1 Y N N N N N 34.022 -39.934 -5.527 -3.532 -2.479 -0.322 C31 XO4 25
XO4 C33 C26 C 0 1 N N N N N N 29.922 -37.068 -6.556 -5.984 1.748 0.426 C33 XO4 26
XO4 F23 F1 F 0 1 N N N N N N 31.946 -36.357 -2.851 4.252 4.842 2.309 F23 XO4 27
XO4 F34 F2 F 0 1 N N N N N N 28.640 -36.906 -7.034 -6.562 1.418 -0.804 F34 XO4 28
XO4 F35 F3 F 0 1 N N N N N N 30.744 -36.822 -7.617 -6.163 3.113 0.674 F35 XO4 29
XO4 F36 F4 F 0 1 N N N N N N 30.179 -36.163 -5.549 -6.593 1.005 1.442 F36 XO4 30
XO4 N07 N1 N 0 1 N N N N N N 34.880 -37.617 -5.208 -1.195 -1.887 -0.175 N07 XO4 31
XO4 N11 N2 N 0 1 N N N N N N 36.860 -35.618 -4.741 1.534 -2.286 -0.341 N11 XO4 32
XO4 N15 N3 N 0 1 Y N N N N N 37.422 -31.615 -6.490 4.439 -0.750 -2.884 N15 XO4 33
XO4 N17 N4 N 0 1 Y N N N N N 36.800 -32.433 -4.547 2.956 0.633 -2.146 N17 XO4 34
XO4 O09 O1 O 0 1 N N N N N N 35.434 -38.533 -3.135 -1.398 -2.284 -2.322 O09 XO4 35
XO4 O32 O2 O 0 1 N N N N N N 30.082 -38.403 -6.042 -4.586 1.450 0.391 O32 XO4 36
XO4 H1 H1 H 0 1 N N N N N N 37.795 -37.165 -3.850 0.776 -3.822 -1.556 H1 XO4 37
XO4 H2 H2 H 0 1 N N N N N N 36.725 -36.168 -2.807 1.162 -2.309 -2.408 H2 XO4 38
XO4 H3 H3 H 0 1 N N N N N N 35.623 -34.287 -1.194 4.099 3.728 -2.051 H3 XO4 39
XO4 H4 H4 H 0 1 N N N N N N 33.806 -35.951 -1.058 5.015 5.040 -0.181 H4 XO4 40
XO4 H5 H5 H 0 1 N N N N N N 32.339 -34.698 -4.918 2.372 3.042 2.511 H5 XO4 41
XO4 H6 H6 H 0 1 N N N N N N 39.098 -39.735 -10.263 4.859 -5.006 3.009 H6 XO4 42
XO4 H7 H7 H 0 1 N N N N N N 37.325 -39.645 -9.990 5.721 -3.667 2.216 H7 XO4 43
XO4 H8 H8 H 0 1 N N N N N N 38.217 -38.203 -10.584 5.775 -3.835 3.987 H8 XO4 44
XO4 H9 H9 H 0 1 N N N N N N 38.581 -39.536 -7.842 3.341 -3.380 4.105 H9 XO4 45
XO4 H10 H10 H 0 1 N N N N N N 39.472 -38.095 -8.436 4.203 -2.040 3.311 H10 XO4 46
XO4 H11 H11 H 0 1 N N N N N N 37.288 -36.857 -8.591 3.602 -2.968 1.092 H11 XO4 47
XO4 H12 H12 H 0 1 N N N N N N 36.459 -38.288 -7.889 2.740 -4.307 1.885 H12 XO4 48
XO4 H13 H13 H 0 1 N N N N N N 37.631 -38.036 -5.800 1.269 -2.620 3.027 H13 XO4 49
XO4 H14 H14 H 0 1 N N N N N N 38.707 -36.775 -6.491 2.079 -1.336 2.097 H14 XO4 50
XO4 H15 H15 H 0 1 N N N N N N 36.761 -35.196 -6.729 0.596 -3.715 0.887 H15 XO4 51
XO4 H16 H16 H 0 1 N N N N N N 34.545 -35.725 -6.034 -1.004 -2.196 1.884 H16 XO4 52
XO4 H17 H17 H 0 1 N N N N N N 35.127 -36.977 -7.183 -0.134 -0.780 1.252 H17 XO4 53
XO4 H18 H18 H 0 1 N N N N N N 38.733 -35.201 -5.138 2.156 -0.496 0.566 H18 XO4 54
XO4 H19 H19 H 0 1 N N N N N N 38.110 -34.733 -3.519 0.851 -0.321 -0.632 H19 XO4 55
XO4 H20 H20 H 0 1 N N N N N N 38.495 -33.369 -7.138 3.882 -2.416 -1.627 H20 XO4 56
XO4 H21 H21 H 0 1 N N N N N N 36.200 -30.404 -5.153 4.359 1.214 -3.691 H21 XO4 57
XO4 H22 H22 H 0 1 N N N N N N 36.957 -32.838 -2.456 1.127 1.579 -1.751 H22 XO4 58
XO4 H23 H23 H 0 1 N N N N N N 35.792 -31.542 -2.889 2.196 2.445 -2.880 H23 XO4 59
XO4 H24 H24 H 0 1 N N N N N N 34.183 -33.032 -5.076 1.458 1.731 0.637 H24 XO4 60
XO4 H25 H25 H 0 1 N N N N N N 32.325 -36.990 -5.550 -2.132 0.547 0.259 H25 XO4 61
XO4 H26 H26 H 0 1 N N N N N N 30.832 -40.969 -6.125 -6.261 -0.524 0.005 H26 XO4 62
XO4 H27 H27 H 0 1 N N N N N N 33.119 -41.866 -5.813 -5.630 -2.864 -0.421 H27 XO4 63
XO4 H28 H28 H 0 1 N N N N N N 35.020 -40.325 -5.393 -3.257 -3.506 -0.511 H28 XO4 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XO4 C01 C02 SING N N 1
XO4 C02 C03 SING N N 2
XO4 C03 C04 SING N N 3
XO4 F35 C33 SING N N 4
XO4 F34 C33 SING N N 5
XO4 C33 O32 SING N N 6
XO4 C33 F36 SING N N 7
XO4 C04 C05 SING N N 8
XO4 N15 C14 SING Y N 9
XO4 N15 C16 DOUB Y N 10
XO4 C14 C13 DOUB Y N 11
XO4 C06 C05 SING N N 12
XO4 C06 N07 SING N N 13
XO4 O32 C28 SING N N 14
XO4 C05 N11 SING N N 15
XO4 C29 C28 DOUB Y N 16
XO4 C29 C30 SING Y N 17
XO4 C28 C27 SING Y N 18
XO4 C30 C31 DOUB Y N 19
XO4 C27 C26 DOUB Y N 20
XO4 C31 C26 SING Y N 21
XO4 C26 N07 SING N N 22
XO4 C16 N17 SING Y N 23
XO4 N07 C08 SING N N 24
XO4 C13 C12 SING N N 25
XO4 C13 N17 SING Y N 26
XO4 N11 C12 SING N N 27
XO4 N11 C10 SING N N 28
XO4 N17 C18 SING N N 29
XO4 C25 C24 DOUB Y N 30
XO4 C25 C19 SING Y N 31
XO4 C24 C22 SING Y N 32
XO4 C08 C10 SING N N 33
XO4 C08 O09 DOUB N N 34
XO4 C18 C19 SING N N 35
XO4 C19 C20 DOUB Y N 36
XO4 C22 F23 SING N N 37
XO4 C22 C21 DOUB Y N 38
XO4 C20 C21 SING Y N 39
XO4 C10 H1 SING N N 40
XO4 C10 H2 SING N N 41
XO4 C20 H3 SING N N 42
XO4 C21 H4 SING N N 43
XO4 C24 H5 SING N N 44
XO4 C01 H6 SING N N 45
XO4 C01 H7 SING N N 46
XO4 C01 H8 SING N N 47
XO4 C02 H9 SING N N 48
XO4 C02 H10 SING N N 49
XO4 C03 H11 SING N N 50
XO4 C03 H12 SING N N 51
XO4 C04 H13 SING N N 52
XO4 C04 H14 SING N N 53
XO4 C05 H15 SING N N 54
XO4 C06 H16 SING N N 55
XO4 C06 H17 SING N N 56
XO4 C12 H18 SING N N 57
XO4 C12 H19 SING N N 58
XO4 C14 H20 SING N N 59
XO4 C16 H21 SING N N 60
XO4 C18 H22 SING N N 61
XO4 C18 H23 SING N N 62
XO4 C25 H24 SING N N 63
XO4 C27 H25 SING N N 64
XO4 C29 H26 SING N N 65
XO4 C30 H27 SING N N 66
XO4 C31 H28 SING N N 67
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XO4 SMILES ACDLabs 12.01 C2C(=O)N(c1cc(ccc1)OC(F)(F)F)CC(CCCC)N2Cc3n(cnc3)Cc4ccc(F)cc4
XO4 InChI InChI 1.03 InChI=1S/C26H28F4N4O2/c1-2-3-5-22-16-34(21-6-4-7-24(12-21)36-26(28,29)30)25(35)17-32(22)15-23-13-31-18-33(23)14-19-8-10-20(27)11-9-19/h4,6-13,18,22H,2-3,5,14-17H2,1H3/t22-/m0/s1
XO4 InChIKey InChI 1.03 OUYZKEOWZZQKSB-QFIPXVFZSA-N
XO4 SMILES_CANONICAL CACTVS 3.385 CCCC[C@H]1CN(C(=O)CN1Cc2cncn2Cc3ccc(F)cc3)c4cccc(OC(F)(F)F)c4
XO4 SMILES CACTVS 3.385 CCCC[CH]1CN(C(=O)CN1Cc2cncn2Cc3ccc(F)cc3)c4cccc(OC(F)(F)F)c4
XO4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCCC[C@H]1CN(C(=O)CN1Cc2cncn2Cc3ccc(cc3)F)c4cccc(c4)OC(F)(F)F
XO4 SMILES "OpenEye OEToolkits" 2.0.7 CCCCC1CN(C(=O)CN1Cc2cncn2Cc3ccc(cc3)F)c4cccc(c4)OC(F)(F)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XO4 "SYSTEMATIC NAME" ACDLabs 12.01 (5S)-5-butyl-4-({1-[(4-fluorophenyl)methyl]-1H-imidazol-5-yl}methyl)-1-[3-(trifluoromethoxy)phenyl]piperazin-2-one
XO4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 (5~{S})-5-butyl-4-[[3-[(4-fluorophenyl)methyl]imidazol-4-yl]methyl]-1-[3-(trifluoromethyloxy)phenyl]piperazin-2-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XO4 'Create component' 2020-12-22 RCSB
XO4 'Initial release' 2022-11-09 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
XO4 C10 C 10.389 2.473 1
XO4 C13 C 10.389 5.473 2
XO4 C20 C 6.165 3.936 3
XO4 C21 C 4.739 3.473 4
XO4 C22 C 4.427 2.005 5
XO4 C24 C 5.541 1.002 6
XO4 C26 C 11.688 -1.277 7
XO4 C28 C 10.389 -3.527 8
XO4 C01 C 18.183 2.473 9
XO4 C02 C 16.884 3.223 10
XO4 C03 C 15.585 2.473 11
XO4 C04 C 14.286 3.223 12
XO4 C05 C 12.987 2.473 13
XO4 C06 C 12.987 0.973 14
XO4 C08 C 10.389 0.973 15
XO4 C12 C 11.688 4.723 16
XO4 C14 C 10.232 6.965 17
XO4 C16 C 8.014 5.978 18
XO4 C18 C 8.706 3.396 19
XO4 C19 C 7.280 2.932 20
XO4 C25 C 6.968 1.465 21
XO4 C27 C 10.389 -2.027 22
XO4 C29 C 11.688 -4.277 23
XO4 C30 C 12.987 -3.527 24
XO4 C31 C 12.987 -2.027 25
XO4 C33 C 9.090 -5.777 26
XO4 F23 F 3.000 1.542 27
XO4 F34 F 7.590 -5.777 28
XO4 F35 F 9.090 -7.277 29
XO4 F36 F 10.590 -5.777 30
XO4 N07 N 11.688 0.223 31
XO4 N11 N 11.688 3.223 32
XO4 N15 N 8.764 7.277 33
XO4 N17 N 9.018 4.863 34
XO4 O09 O 9.090 0.223 35
XO4 O32 O 9.090 -4.277 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
XO4 C01 C02 SINGLE NONE 1
XO4 C02 C03 SINGLE NONE 2
XO4 C03 C04 SINGLE NONE 3
XO4 F35 C33 SINGLE NONE 4
XO4 F34 C33 SINGLE NONE 5
XO4 C33 O32 SINGLE NONE 6
XO4 C33 F36 SINGLE NONE 7
XO4 C05 C04 SINGLE BEGINWEDGE 8
XO4 N15 C14 SINGLE NONE 9
XO4 N15 C16 DOUBLE NONE 10
XO4 C14 C13 DOUBLE NONE 11
XO4 C06 C05 SINGLE NONE 12
XO4 C06 N07 SINGLE NONE 13
XO4 O32 C28 SINGLE NONE 14
XO4 C05 N11 SINGLE NONE 15
XO4 C29 C28 DOUBLE NONE 16
XO4 C29 C30 SINGLE NONE 17
XO4 C28 C27 SINGLE NONE 18
XO4 C30 C31 DOUBLE NONE 19
XO4 C27 C26 DOUBLE NONE 20
XO4 C31 C26 SINGLE NONE 21
XO4 C26 N07 SINGLE NONE 22
XO4 C16 N17 SINGLE NONE 23
XO4 N07 C08 SINGLE NONE 24
XO4 C13 C12 SINGLE NONE 25
XO4 C13 N17 SINGLE NONE 26
XO4 N11 C12 SINGLE NONE 27
XO4 N11 C10 SINGLE NONE 28
XO4 N17 C18 SINGLE NONE 29
XO4 C25 C24 DOUBLE NONE 30
XO4 C25 C19 SINGLE NONE 31
XO4 C24 C22 SINGLE NONE 32
XO4 C08 C10 SINGLE NONE 33
XO4 C08 O09 DOUBLE NONE 34
XO4 C18 C19 SINGLE NONE 35
XO4 C19 C20 DOUBLE NONE 36
XO4 C22 F23 SINGLE NONE 37
XO4 C22 C21 DOUBLE NONE 38
XO4 C20 C21 SINGLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
XO4 MurckoScaffold S1 scaffold O=C1CN(Cc2cncn2Cc2ccccc2)CCN1c1ccccc1 InChI=1S/C21H22N4O/c26-21-16-23(11-12-25(21)19-9-5-2-6-10-19)15-20-13-22-17-24(20)14-18-7-3-1-4-8-18/h1-10,13,17H,11-12,14-16H2 FQLCBBNKRQMNCR-UHFFFAOYSA-N
XO4 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
XO4 imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
XO4 peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
XO4 phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
XO4 piperazine F5 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
XO4 Z2856434814 F6 fragment CCN(CC)c1cccc(O)c1 InChI=1S/C10H15NO/c1-3-11(4-2)9-6-5-7-10(12)8-9/h5-8,12H,3-4H2,1-2H3 WAVOOWVINKGEHS-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
XO4 C10 S1 1
XO4 C13 S1 1
XO4 C20 S1 1
XO4 C21 S1 1
XO4 C22 S1 1
XO4 C24 S1 1
XO4 C26 S1 1
XO4 C28 S1 1
XO4 C05 S1 1
XO4 C06 S1 1
XO4 C08 S1 1
XO4 C12 S1 1
XO4 C14 S1 1
XO4 C16 S1 1
XO4 C18 S1 1
XO4 C19 S1 1
XO4 C25 S1 1
XO4 C27 S1 1
XO4 C29 S1 1
XO4 C30 S1 1
XO4 C31 S1 1
XO4 N07 S1 1
XO4 N11 S1 1
XO4 N15 S1 1
XO4 N17 S1 1
XO4 O09 S1 1
XO4 N07 F1 1
XO4 C08 F1 1
XO4 O09 F1 1
XO4 C10 F1 1
XO4 C13 F2 1
XO4 C14 F2 1
XO4 N15 F2 1
XO4 C16 F2 1
XO4 N17 F2 1
XO4 O09 F3 1
XO4 C08 F3 1
XO4 C10 F3 1
XO4 N11 F3 1
XO4 C20 F4 1
XO4 C19 F4 1
XO4 C25 F4 1
XO4 C24 F4 1
XO4 C22 F4 1
XO4 C21 F4 1
XO4 C26 F4 2
XO4 C27 F4 2
XO4 C28 F4 2
XO4 C29 F4 2
XO4 C30 F4 2
XO4 C31 F4 2
XO4 N07 F5 1
XO4 C06 F5 1
XO4 C05 F5 1
XO4 N11 F5 1
XO4 C10 F5 1
XO4 C08 F5 1
XO4 C10 F6 1
XO4 C08 F6 1
XO4 N07 F6 1
XO4 C06 F6 1
XO4 C05 F6 1
XO4 C26 F6 1
XO4 C31 F6 1
XO4 C30 F6 1
XO4 C29 F6 1
XO4 C28 F6 1
XO4 O32 F6 1
XO4 C27 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id XO4
_pdbe_chem_comp_rdkit_properties.exactmw 504.215
_pdbe_chem_comp_rdkit_properties.amw 504.528
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 64
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.385
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 245.989
_pdbe_chem_comp_rdkit_properties.tpsa 50.600
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.424
_pdbe_chem_comp_rdkit_properties.CrippenMR 124.964
_pdbe_chem_comp_rdkit_properties.chi0v 17.117
_pdbe_chem_comp_rdkit_properties.chi1v 9.078
_pdbe_chem_comp_rdkit_properties.chi2v 3.697
_pdbe_chem_comp_rdkit_properties.chi3v 3.697
_pdbe_chem_comp_rdkit_properties.chi4v 2.374
_pdbe_chem_comp_rdkit_properties.chi0n 45.117
_pdbe_chem_comp_rdkit_properties.chi1n 23.078
_pdbe_chem_comp_rdkit_properties.chi2n 3.697
_pdbe_chem_comp_rdkit_properties.chi3n 3.697
_pdbe_chem_comp_rdkit_properties.chi4n 2.374
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.400
_pdbe_chem_comp_rdkit_properties.kappa1 8.048
_pdbe_chem_comp_rdkit_properties.kappa2 11.113
_pdbe_chem_comp_rdkit_properties.kappa3 6.628
_pdbe_chem_comp_rdkit_properties.Phi 2.484
#
_pdbe_chem_comp_external_mappings.comp_id XO4
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 165416317
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
XO4 C10 0.342 2.784 -0.071 ETKDGv3 1
XO4 C13 -2.317 1.687 1.012 ETKDGv3 2
XO4 C20 -5.731 -0.262 1.405 ETKDGv3 3
XO4 C21 -7.055 -0.072 0.776 ETKDGv3 4
XO4 C22 -7.186 -0.167 -0.552 ETKDGv3 5
XO4 C24 -6.007 -0.466 -1.391 ETKDGv3 6
XO4 C26 3.805 1.172 -0.498 ETKDGv3 7
XO4 C28 6.088 0.367 -0.037 ETKDGv3 8
XO4 C01 0.340 -4.625 -1.443 ETKDGv3 9
XO4 C02 0.309 -3.170 -1.901 ETKDGv3 10
XO4 C03 0.331 -2.212 -0.704 ETKDGv3 11
XO4 C04 0.299 -0.748 -1.173 ETKDGv3 12
XO4 C05 0.245 0.260 0.001 ETKDGv3 13
XO4 C06 1.657 0.433 0.635 ETKDGv3 14
XO4 C08 1.798 2.673 -0.375 ETKDGv3 15
XO4 C12 -1.809 1.628 -0.408 ETKDGv3 16
XO4 C14 -2.398 2.781 1.755 ETKDGv3 17
XO4 C16 -3.144 1.185 3.014 ETKDGv3 18
XO4 C18 -3.294 -0.700 1.281 ETKDGv3 19
XO4 C19 -4.650 -0.526 0.648 ETKDGv3 20
XO4 C25 -4.807 -0.639 -0.824 ETKDGv3 21
XO4 C27 4.680 0.633 0.372 ETKDGv3 22
XO4 C29 6.474 0.672 -1.284 ETKDGv3 23
XO4 C30 5.519 1.260 -2.243 ETKDGv3 24
XO4 C31 4.256 1.496 -1.873 ETKDGv3 25
XO4 C33 6.771 -0.576 2.183 ETKDGv3 26
XO4 F23 -8.400 0.008 -1.131 ETKDGv3 27
XO4 F34 7.926 -1.098 2.733 ETKDGv3 28
XO4 F35 5.782 -1.543 2.222 ETKDGv3 29
XO4 F36 6.383 0.526 2.924 ETKDGv3 30
XO4 N07 2.441 1.423 -0.109 ETKDGv3 31
XO4 N11 -0.333 1.544 -0.504 ETKDGv3 32
XO4 N15 -2.928 2.460 3.039 ETKDGv3 33
XO4 N17 -2.783 0.578 1.776 ETKDGv3 34
XO4 O09 2.446 3.668 -0.801 ETKDGv3 35
XO4 O32 7.032 -0.194 0.835 ETKDGv3 36
XO4 H1 -0.082 3.660 -0.608 ETKDGv3 37
XO4 H2 0.225 2.934 1.023 ETKDGv3 38
XO4 H3 -5.647 -0.183 2.482 ETKDGv3 39
XO4 H4 -7.916 0.144 1.395 ETKDGv3 40
XO4 H5 -6.118 -0.551 -2.464 ETKDGv3 41
XO4 H6 1.266 -4.829 -0.864 ETKDGv3 42
XO4 H7 -0.546 -4.850 -0.811 ETKDGv3 43
XO4 H8 0.322 -5.294 -2.330 ETKDGv3 44
XO4 H9 1.191 -2.978 -2.550 ETKDGv3 45
XO4 H10 -0.613 -3.002 -2.500 ETKDGv3 46
XO4 H11 -0.552 -2.414 -0.061 ETKDGv3 47
XO4 H12 1.248 -2.405 -0.109 ETKDGv3 48
XO4 H13 -0.600 -0.616 -1.813 ETKDGv3 49
XO4 H14 1.185 -0.534 -1.811 ETKDGv3 50
XO4 H15 -0.402 -0.161 0.798 ETKDGv3 51
XO4 H16 1.542 0.788 1.682 ETKDGv3 52
XO4 H17 2.192 -0.537 0.687 ETKDGv3 53
XO4 H18 -2.263 0.763 -0.927 ETKDGv3 54
XO4 H19 -2.168 2.523 -0.960 ETKDGv3 55
XO4 H20 -2.122 3.779 1.442 ETKDGv3 56
XO4 H21 -3.577 0.646 3.846 ETKDGv3 57
XO4 H22 -2.580 -1.130 0.549 ETKDGv3 58
XO4 H23 -3.365 -1.422 2.123 ETKDGv3 59
XO4 H24 -3.953 -0.871 -1.448 ETKDGv3 60
XO4 H25 4.356 0.409 1.378 ETKDGv3 61
XO4 H26 7.493 0.486 -1.599 ETKDGv3 62
XO4 H27 5.842 1.494 -3.249 ETKDGv3 63
XO4 H28 3.558 1.912 -2.589 ETKDGv3 64
#