data_XG1
#
_chem_comp.id XG1
_chem_comp.name 2-butyl-2H-pyrazolo[3,4-c]quinolin-4-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H16 N4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-05-19
_chem_comp.pdbx_modified_date 2014-10-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 240.304
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XG1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4QC0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XG1 NAR NAR N 0 1 N N N N N N 35.739 -7.054 45.220 0.593 3.290 -0.065 NAR XG1 1
XG1 CAG CAG C 0 1 Y N N N N N 35.171 -7.937 46.063 1.008 1.973 -0.054 CAG XG1 2
XG1 NAI NAI N 0 1 Y N N N N N 35.512 -9.234 46.144 2.273 1.694 0.135 NAI XG1 3
XG1 CAA CAA C 0 1 Y N N N N N 34.899 -10.142 46.950 2.782 0.441 0.164 CAA XG1 4
XG1 CAC CAC C 0 1 Y N N N N N 35.362 -11.452 46.946 4.155 0.250 0.374 CAC XG1 5
XG1 CAE CAE C 0 1 Y N N N N N 34.807 -12.402 47.791 4.679 -1.020 0.405 CAE XG1 6
XG1 CAF CAF C 0 1 Y N N N N N 33.779 -12.020 48.631 3.862 -2.128 0.231 CAF XG1 7
XG1 CAD CAD C 0 1 Y N N N N N 33.333 -10.702 48.678 2.509 -1.969 0.022 CAD XG1 8
XG1 CAB CAB C 0 1 Y N N N N N 33.898 -9.762 47.843 1.957 -0.692 -0.013 CAB XG1 9
XG1 CAJ CAJ C 0 1 Y N N N N N 33.491 -8.436 47.837 0.520 -0.486 -0.232 CAJ XG1 10
XG1 CAM CAM C 0 1 Y N N N N N 32.487 -7.782 48.581 -0.593 -1.254 -0.440 CAM XG1 11
XG1 CAH CAH C 0 1 Y N N N N N 34.097 -7.468 46.932 0.027 0.903 -0.247 CAH XG1 12
XG1 NAK NAK N 0 1 Y N N N N N 33.456 -6.313 47.123 -1.266 0.821 -0.449 NAK XG1 13
XG1 NAL NAL N 0 1 Y N N N N N 32.506 -6.521 48.144 -1.633 -0.406 -0.570 NAL XG1 14
XG1 CAN CAN C 0 1 N N N N N N 31.720 -5.338 48.508 -3.015 -0.832 -0.804 CAN XG1 15
XG1 CAO CAO C 0 1 N N N N N N 30.260 -5.675 48.238 -3.919 -0.251 0.286 CAO XG1 16
XG1 CAP CAP C 0 1 N N N N N N 30.041 -6.701 47.126 -5.362 -0.695 0.041 CAP XG1 17
XG1 CAQ CAQ C 0 1 N N N N N N 28.683 -6.598 46.447 -6.266 -0.114 1.131 CAQ XG1 18
XG1 H1 H1 H 0 1 N N N N N N 36.441 -7.515 44.677 1.238 4.003 0.067 H1 XG1 19
XG1 H2 H2 H 0 1 N N N N N N 35.041 -6.678 44.611 -0.342 3.503 -0.209 H2 XG1 20
XG1 H3 H3 H 0 1 N N N N N N 36.162 -11.734 46.278 4.802 1.104 0.511 H3 XG1 21
XG1 H4 H4 H 0 1 N N N N N N 35.171 -13.419 47.792 5.737 -1.158 0.567 H4 XG1 22
XG1 H5 H5 H 0 1 N N N N N N 33.311 -12.759 49.265 4.288 -3.120 0.258 H5 XG1 23
XG1 H6 H6 H 0 1 N N N N N N 32.549 -10.418 49.364 1.878 -2.835 -0.114 H6 XG1 24
XG1 H7 H7 H 0 1 N N N N N N 31.844 -8.208 49.338 -0.632 -2.332 -0.490 H7 XG1 25
XG1 H8 H8 H 0 1 N N N N N N 31.863 -5.102 49.573 -3.345 -0.474 -1.779 H8 XG1 26
XG1 H9 H9 H 0 1 N N N N N N 32.028 -4.477 47.897 -3.069 -1.920 -0.779 H9 XG1 27
XG1 H10 H10 H 0 1 N N N N N N 29.740 -4.747 47.957 -3.589 -0.609 1.261 H10 XG1 28
XG1 H11 H11 H 0 1 N N N N N N 29.823 -6.074 49.165 -3.864 0.838 0.261 H11 XG1 29
XG1 H12 H12 H 0 1 N N N N N N 30.135 -7.707 47.560 -5.693 -0.337 -0.934 H12 XG1 30
XG1 H13 H13 H 0 1 N N N N N N 30.821 -6.556 46.364 -5.417 -1.783 0.067 H13 XG1 31
XG1 H14 H14 H 0 1 N N N N N N 28.605 -7.366 45.664 -7.294 -0.430 0.957 H14 XG1 32
XG1 H15 H15 H 0 1 N N N N N N 27.888 -6.752 47.192 -5.936 -0.472 2.106 H15 XG1 33
XG1 H16 H16 H 0 1 N N N N N N 28.574 -5.601 45.995 -6.212 0.974 1.106 H16 XG1 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XG1 NAR CAG SING N N 1
XG1 CAG NAI DOUB Y N 2
XG1 CAG CAH SING Y N 3
XG1 NAI CAA SING Y N 4
XG1 CAQ CAP SING N N 5
XG1 CAH NAK DOUB Y N 6
XG1 CAH CAJ SING Y N 7
XG1 CAC CAA DOUB Y N 8
XG1 CAC CAE SING Y N 9
XG1 CAA CAB SING Y N 10
XG1 NAK NAL SING Y N 11
XG1 CAP CAO SING N N 12
XG1 CAE CAF DOUB Y N 13
XG1 CAJ CAB SING Y N 14
XG1 CAJ CAM DOUB Y N 15
XG1 CAB CAD DOUB Y N 16
XG1 NAL CAN SING N N 17
XG1 NAL CAM SING Y N 18
XG1 CAO CAN SING N N 19
XG1 CAF CAD SING Y N 20
XG1 NAR H1 SING N N 21
XG1 NAR H2 SING N N 22
XG1 CAC H3 SING N N 23
XG1 CAE H4 SING N N 24
XG1 CAF H5 SING N N 25
XG1 CAD H6 SING N N 26
XG1 CAM H7 SING N N 27
XG1 CAN H8 SING N N 28
XG1 CAN H9 SING N N 29
XG1 CAO H10 SING N N 30
XG1 CAO H11 SING N N 31
XG1 CAP H12 SING N N 32
XG1 CAP H13 SING N N 33
XG1 CAQ H14 SING N N 34
XG1 CAQ H15 SING N N 35
XG1 CAQ H16 SING N N 36
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XG1 SMILES ACDLabs 12.01 n2c3c(c1cn(nc1c2N)CCCC)cccc3
XG1 InChI InChI 1.03 InChI=1S/C14H16N4/c1-2-3-8-18-9-11-10-6-4-5-7-12(10)16-14(15)13(11)17-18/h4-7,9H,2-3,8H2,1H3,(H2,15,16)
XG1 InChIKey InChI 1.03 BRUVQRFMAMBUDN-UHFFFAOYSA-N
XG1 SMILES_CANONICAL CACTVS 3.385 CCCCn1cc2c3ccccc3nc(N)c2n1
XG1 SMILES CACTVS 3.385 CCCCn1cc2c3ccccc3nc(N)c2n1
XG1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CCCCn1cc2c3ccccc3nc(c2n1)N
XG1 SMILES "OpenEye OEToolkits" 1.7.6 CCCCn1cc2c3ccccc3nc(c2n1)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XG1 "SYSTEMATIC NAME" ACDLabs 12.01 2-butyl-2H-pyrazolo[3,4-c]quinolin-4-amine
XG1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 2-butylpyrazolo[3,4-c]quinolin-4-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XG1 'Create component' 2014-05-19 PDBJ
XG1 'Initial release' 2014-10-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
XG1 NAR N 11.094 -3.194 1
XG1 CAG C 11.094 -1.694 2
XG1 NAI N 12.393 -0.944 3
XG1 CAA C 12.393 0.556 4
XG1 CAC C 13.758 1.316 5
XG1 CAE C 13.770 2.878 6
XG1 CAF C 12.417 3.659 7
XG1 CAD C 11.070 2.868 8
XG1 CAB C 11.094 1.306 9
XG1 CAJ C 9.795 0.556 10
XG1 CAM C 8.375 1.013 11
XG1 CAH C 9.795 -0.944 12
XG1 NAK N 8.375 -1.402 13
XG1 NAL N 7.500 -0.194 14
XG1 CAN C 6.000 -0.194 15
XG1 CAO C 5.250 -1.494 16
XG1 CAP C 3.750 -1.494 17
XG1 CAQ C 3.000 -2.792 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
XG1 NAR CAG SINGLE NONE 1
XG1 CAG NAI DOUBLE NONE 2
XG1 CAG CAH SINGLE NONE 3
XG1 NAI CAA SINGLE NONE 4
XG1 CAQ CAP SINGLE NONE 5
XG1 CAH NAK DOUBLE NONE 6
XG1 CAH CAJ SINGLE NONE 7
XG1 CAC CAA DOUBLE NONE 8
XG1 CAC CAE SINGLE NONE 9
XG1 CAA CAB SINGLE NONE 10
XG1 NAK NAL SINGLE NONE 11
XG1 CAP CAO SINGLE NONE 12
XG1 CAE CAF DOUBLE NONE 13
XG1 CAJ CAB SINGLE NONE 14
XG1 CAJ CAM DOUBLE NONE 15
XG1 CAB CAD DOUBLE NONE 16
XG1 NAL CAN SINGLE NONE 17
XG1 NAL CAM SINGLE NONE 18
XG1 CAO CAN SINGLE NONE 19
XG1 CAF CAD SINGLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
XG1 MurckoScaffold S1 scaffold 'c1ccc2c(c1)ncc1n[nH]cc12' InChI=1S/C10H7N3/c1-2-4-9-7(3-1)8-5-12-13-10(8)6-11-9/h1-6H,(H,12,13) LONFHWIJSLLRRX-UHFFFAOYSA-N
XG1 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
XG1 pyrazole F2 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
XG1 pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
XG1 quinoline F4 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
XG1 CAG S1 1
XG1 NAI S1 1
XG1 CAA S1 1
XG1 CAC S1 1
XG1 CAE S1 1
XG1 CAF S1 1
XG1 CAD S1 1
XG1 CAB S1 1
XG1 CAJ S1 1
XG1 CAM S1 1
XG1 CAH S1 1
XG1 NAK S1 1
XG1 NAL S1 1
XG1 CAA F1 1
XG1 CAC F1 1
XG1 CAE F1 1
XG1 CAF F1 1
XG1 CAD F1 1
XG1 CAB F1 1
XG1 CAM F2 1
XG1 CAJ F2 1
XG1 CAH F2 1
XG1 NAK F2 1
XG1 NAL F2 1
XG1 CAG F3 1
XG1 CAH F3 1
XG1 CAJ F3 1
XG1 CAB F3 1
XG1 CAA F3 1
XG1 NAI F3 1
XG1 CAF F4 1
XG1 CAD F4 1
XG1 CAB F4 1
XG1 CAA F4 1
XG1 CAC F4 1
XG1 CAE F4 1
XG1 NAI F4 1
XG1 CAG F4 1
XG1 CAH F4 1
XG1 CAJ F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id XG1
_pdbe_chem_comp_rdkit_properties.exactmw 240.137
_pdbe_chem_comp_rdkit_properties.amw 240.310
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.286
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 128.017
_pdbe_chem_comp_rdkit_properties.tpsa 56.730
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.729
_pdbe_chem_comp_rdkit_properties.CrippenMR 69.118
_pdbe_chem_comp_rdkit_properties.chi0v 8.789
_pdbe_chem_comp_rdkit_properties.chi1v 4.792
_pdbe_chem_comp_rdkit_properties.chi2v 2.226
_pdbe_chem_comp_rdkit_properties.chi3v 2.226
_pdbe_chem_comp_rdkit_properties.chi4v 1.528
_pdbe_chem_comp_rdkit_properties.chi0n 24.789
_pdbe_chem_comp_rdkit_properties.chi1n 12.686
_pdbe_chem_comp_rdkit_properties.chi2n 2.226
_pdbe_chem_comp_rdkit_properties.chi3n 2.226
_pdbe_chem_comp_rdkit_properties.chi4n 1.528
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.100
_pdbe_chem_comp_rdkit_properties.kappa1 3.072
_pdbe_chem_comp_rdkit_properties.kappa2 4.292
_pdbe_chem_comp_rdkit_properties.kappa3 1.699
_pdbe_chem_comp_rdkit_properties.Phi 0.732
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
XG1 UniChem ZINC ZINC000115621707
XG1 UniChem Nikkaji J3.353.387J
XG1 UniChem PubChem 66958698
XG1 UniChem SureChEMBL SCHEMBL1233701
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
XG1 NAR -1.970 3.269 1.453 ETKDGv3 1
XG1 CAG -2.105 1.911 1.034 ETKDGv3 2
XG1 NAI -3.287 1.431 0.746 ETKDGv3 3
XG1 CAA -3.516 0.069 0.309 ETKDGv3 4
XG1 CAC -4.758 -0.350 0.029 ETKDGv3 5
XG1 CAE -4.987 -1.741 -0.422 ETKDGv3 6
XG1 CAF -3.956 -2.588 -0.553 ETKDGv3 7
XG1 CAD -2.580 -2.140 -0.247 ETKDGv3 8
XG1 CAB -2.373 -0.880 0.163 ETKDGv3 9
XG1 CAJ -1.057 -0.334 0.494 ETKDGv3 10
XG1 CAM 0.164 -0.840 0.445 ETKDGv3 11
XG1 CAH -0.926 1.037 0.919 ETKDGv3 12
XG1 NAK 0.311 1.352 1.115 ETKDGv3 13
XG1 NAL 1.059 0.193 0.857 ETKDGv3 14
XG1 CAN 2.507 0.182 0.688 ETKDGv3 15
XG1 CAO 2.872 0.593 -0.743 ETKDGv3 16
XG1 CAP 4.388 0.726 -0.951 ETKDGv3 17
XG1 CAQ 5.106 -0.624 -0.940 ETKDGv3 18
XG1 H1 -1.034 3.667 1.687 ETKDGv3 19
XG1 H2 -2.812 3.883 1.532 ETKDGv3 20
XG1 H3 -5.599 0.324 0.129 ETKDGv3 21
XG1 H4 -5.992 -2.073 -0.647 ETKDGv3 22
XG1 H5 -4.128 -3.604 -0.883 ETKDGv3 23
XG1 H6 -1.758 -2.836 -0.355 ETKDGv3 24
XG1 H7 0.448 -1.833 0.124 ETKDGv3 25
XG1 H8 2.962 0.888 1.415 ETKDGv3 26
XG1 H9 2.888 -0.838 0.906 ETKDGv3 27
XG1 H10 2.453 -0.142 -1.464 ETKDGv3 28
XG1 H11 2.405 1.579 -0.959 ETKDGv3 29
XG1 H12 4.825 1.387 -0.171 ETKDGv3 30
XG1 H13 4.566 1.207 -1.937 ETKDGv3 31
XG1 H14 6.173 -0.476 -1.208 ETKDGv3 32
XG1 H15 4.648 -1.313 -1.681 ETKDGv3 33
XG1 H16 5.064 -1.084 0.069 ETKDGv3 34
#