data_XF4
#
_chem_comp.id XF4
_chem_comp.name "(5S)-5-{3-[3-(benzyloxy)-5-chlorophenyl]-2-oxo[2H-[1,3'-bipyridine]]-5-yl}pyrimidine-2,4(3H,5H)-dione"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H19 Cl N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-12-15
_chem_comp.pdbx_modified_date 2021-02-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 498.917
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XF4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7L12
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XF4 C1 C1 C 0 1 N N N N N N -13.867 -26.903 1.012 -0.961 1.403 -0.520 C1 XF4 1
XF4 C2 C2 C 0 1 N N N N N N -14.182 -28.874 -0.272 -1.673 -0.828 0.067 C2 XF4 2
XF4 C3 C3 C 0 1 N N N N N N -14.693 -27.647 0.162 -0.682 0.021 -0.394 C3 XF4 3
XF4 C4 C4 C 0 1 Y N N N N N -16.070 -27.165 -0.299 0.655 -0.510 -0.750 C4 XF4 4
XF4 C5 C5 C 0 1 Y N N N N N -17.114 -28.096 -0.429 0.794 -1.392 -1.821 C5 XF4 5
XF4 C6 C6 C 0 1 Y N N N N N -11.792 -26.570 2.340 -2.432 3.253 -0.323 C6 XF4 6
XF4 C7 C7 C 0 1 Y N N N N N -18.382 -27.682 -0.862 2.041 -1.885 -2.151 C7 XF4 7
XF4 C8 C8 C 0 1 Y N N N N N -18.603 -26.332 -1.156 3.154 -1.505 -1.422 C8 XF4 8
XF4 C9 C9 C 0 1 Y N N N N N -17.567 -25.400 -1.022 3.024 -0.627 -0.355 C9 XF4 9
XF4 C10 C10 C 0 1 N N N N N N -16.908 -23.073 -0.905 5.374 -0.810 -0.046 C10 XF4 10
XF4 C11 C11 C 0 1 Y N N N N N -17.615 -21.786 -1.304 6.465 -0.290 0.854 C11 XF4 11
XF4 C12 C12 C 0 1 Y N N N N N -16.304 -25.819 -0.591 1.777 -0.124 -0.020 C12 XF4 12
XF4 C13 C13 C 0 1 Y N N N N N -12.163 -26.548 3.690 -3.273 3.724 -1.322 C13 XF4 13
XF4 C14 C14 C 0 1 Y N N N N N -10.246 -25.174 4.172 -2.986 5.901 -0.626 C14 XF4 14
XF4 C15 C15 C 0 1 Y N N N N N -9.879 -25.199 2.821 -2.139 5.510 0.394 C15 XF4 15
XF4 C16 C16 C 0 1 Y N N N N N -10.651 -25.907 1.893 -1.851 4.164 0.556 C16 XF4 16
XF4 C17 C17 C 0 1 N N N N N N -12.106 -28.554 1.017 -3.159 1.058 0.251 C17 XF4 17
XF4 C18 C18 C 0 1 N N N N N N -12.918 -29.316 0.168 -2.933 -0.292 0.397 C18 XF4 18
XF4 C24 C19 C 0 1 N N N N N N -12.391 -30.659 -0.342 -4.015 -1.179 0.892 C24 XF4 19
XF4 C25 C20 C 0 1 N N N N N N -12.714 -30.983 -1.665 -4.491 -1.056 2.163 C25 XF4 20
XF4 C26 C21 C 0 1 N N N N N N -11.600 -31.553 0.412 -4.602 -2.207 0.023 C26 XF4 21
XF4 C30 C22 C 0 1 N N N N N N -11.507 -33.044 -1.479 -6.010 -2.826 1.783 C30 XF4 22
XF4 C32 C23 C 0 1 Y N N N N N -18.791 -21.408 -0.642 6.796 -0.977 2.007 C32 XF4 23
XF4 C33 C24 C 0 1 Y N N N N N -19.467 -20.237 -1.011 7.797 -0.499 2.832 C33 XF4 24
XF4 C34 C25 C 0 1 Y N N N N N -18.985 -19.451 -2.060 8.467 0.665 2.505 C34 XF4 25
XF4 C35 C26 C 0 1 Y N N N N N -17.821 -19.831 -2.737 8.136 1.351 1.352 C35 XF4 26
XF4 C36 C27 C 0 1 Y N N N N N -17.143 -20.993 -2.349 7.139 0.871 0.523 C36 XF4 27
XF4 N19 N1 N 0 1 N N N N N N -12.621 -27.329 1.430 -2.176 1.882 -0.196 N19 XF4 28
XF4 N20 N2 N 0 1 Y N N N N N -11.385 -25.845 4.619 -3.521 5.013 -1.441 N20 XF4 29
XF4 N28 N3 N 0 1 N N N N N N -11.177 -32.735 -0.169 -5.584 -2.990 0.518 N28 XF4 30
XF4 N29 N4 N 0 1 N N N N N N -12.278 -32.171 -2.236 -5.488 -1.888 2.591 N29 XF4 31
XF4 O21 O1 O 0 1 N N N N N N -14.343 -25.684 1.444 -0.095 2.164 -0.920 O21 XF4 32
XF4 O22 O2 O 0 1 N N N N N N -17.823 -24.056 -1.317 4.120 -0.257 0.358 O22 XF4 33
XF4 O27 O3 O 0 1 N N N N N N -11.234 -31.335 1.641 -4.213 -2.349 -1.121 O27 XF4 34
XF4 O31 O4 O 0 1 N N N N N N -11.085 -34.157 -1.999 -6.895 -3.544 2.206 O31 XF4 35
XF4 CL23 CL1 CL 0 0 N N N N N N -19.711 -28.862 -1.068 2.213 -2.984 -3.484 CL23 XF4 36
XF4 H1 H1 H 0 1 N N N N N N -14.759 -29.487 -0.948 -1.483 -1.887 0.171 H1 XF4 37
XF4 H2 H2 H 0 1 N N N N N N -16.939 -29.136 -0.194 -0.073 -1.691 -2.391 H2 XF4 38
XF4 H3 H3 H 0 1 N N N N N N -19.578 -26.007 -1.488 4.127 -1.896 -1.681 H3 XF4 39
XF4 H4 H4 H 0 1 N N N N N N -16.740 -23.115 0.181 5.583 -0.521 -1.076 H4 XF4 40
XF4 H5 H5 H 0 1 N N N N N N -15.947 -23.179 -1.429 5.331 -1.897 0.026 H5 XF4 41
XF4 H6 H6 H 0 1 N N N N N N -15.506 -25.099 -0.483 1.675 0.560 0.810 H6 XF4 42
XF4 H7 H7 H 0 1 N N N N N N -13.049 -27.073 4.015 -3.730 3.026 -2.009 H7 XF4 43
XF4 H8 H8 H 0 1 N N N N N N -9.639 -24.627 4.878 -3.214 6.949 -0.756 H8 XF4 44
XF4 H9 H9 H 0 1 N N N N N N -8.996 -24.670 2.494 -1.706 6.244 1.057 H9 XF4 45
XF4 H10 H10 H 0 1 N N N N N N -10.368 -25.939 0.851 -1.192 3.830 1.344 H10 XF4 46
XF4 H11 H11 H 0 1 N N N N N N -11.133 -28.898 1.334 -4.125 1.467 0.504 H11 XF4 47
XF4 H13 H13 H 0 1 N N N N N N -13.311 -30.299 -2.250 -4.084 -0.308 2.827 H13 XF4 48
XF4 H14 H14 H 0 1 N N N N N N -19.179 -22.023 0.157 6.273 -1.886 2.263 H14 XF4 49
XF4 H15 H15 H 0 1 N N N N N N -20.362 -19.942 -0.483 8.056 -1.036 3.734 H15 XF4 50
XF4 H16 H16 H 0 1 N N N N N N -19.510 -18.552 -2.348 9.249 1.038 3.150 H16 XF4 51
XF4 H17 H17 H 0 1 N N N N N N -17.448 -19.232 -3.554 8.663 2.258 1.093 H17 XF4 52
XF4 H18 H18 H 0 1 N N N N N N -16.240 -21.280 -2.868 6.880 1.407 -0.378 H18 XF4 53
XF4 H19 H19 H 0 1 N N N N N N -10.625 -33.376 0.364 -5.981 -3.677 -0.040 H19 XF4 54
XF4 H12 H12 H 0 1 N N N N N N -12.516 -32.396 -3.181 -5.825 -1.800 3.496 H12 XF4 55
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XF4 C35 C36 DOUB Y N 1
XF4 C35 C34 SING Y N 2
XF4 C36 C11 SING Y N 3
XF4 N29 C25 SING N N 4
XF4 N29 C30 SING N N 5
XF4 C34 C33 DOUB Y N 6
XF4 O31 C30 DOUB N N 7
XF4 C25 C24 DOUB N N 8
XF4 C30 N28 SING N N 9
XF4 O22 C9 SING N N 10
XF4 O22 C10 SING N N 11
XF4 C11 C10 SING N N 12
XF4 C11 C32 DOUB Y N 13
XF4 C8 C9 DOUB Y N 14
XF4 C8 C7 SING Y N 15
XF4 CL23 C7 SING N N 16
XF4 C9 C12 SING Y N 17
XF4 C33 C32 SING Y N 18
XF4 C7 C5 DOUB Y N 19
XF4 C12 C4 DOUB Y N 20
XF4 C5 C4 SING Y N 21
XF4 C24 C18 SING N N 22
XF4 C24 C26 SING N N 23
XF4 C4 C3 SING N N 24
XF4 C2 C3 DOUB N N 25
XF4 C2 C18 SING N N 26
XF4 N28 C26 SING N N 27
XF4 C3 C1 SING N N 28
XF4 C18 C17 DOUB N N 29
XF4 C26 O27 DOUB N N 30
XF4 C1 N19 SING N N 31
XF4 C1 O21 DOUB N N 32
XF4 C17 N19 SING N N 33
XF4 N19 C6 SING N N 34
XF4 C16 C6 DOUB Y N 35
XF4 C16 C15 SING Y N 36
XF4 C6 C13 SING Y N 37
XF4 C15 C14 DOUB Y N 38
XF4 C13 N20 DOUB Y N 39
XF4 C14 N20 SING Y N 40
XF4 C2 H1 SING N N 41
XF4 C5 H2 SING N N 42
XF4 C8 H3 SING N N 43
XF4 C10 H4 SING N N 44
XF4 C10 H5 SING N N 45
XF4 C12 H6 SING N N 46
XF4 C13 H7 SING N N 47
XF4 C14 H8 SING N N 48
XF4 C15 H9 SING N N 49
XF4 C16 H10 SING N N 50
XF4 C17 H11 SING N N 51
XF4 C25 H13 SING N N 52
XF4 C32 H14 SING N N 53
XF4 C33 H15 SING N N 54
XF4 C34 H16 SING N N 55
XF4 C35 H17 SING N N 56
XF4 C36 H18 SING N N 57
XF4 N28 H19 SING N N 58
XF4 N29 H12 SING N N 59
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XF4 SMILES ACDLabs 12.01 C2(N(c1cnccc1)C=C(C=C2c3cc(cc(c3)OCc4ccccc4)Cl)C=5C(=O)NC(NC=5)=O)=O
XF4 InChI InChI 1.03 InChI=1S/C27H19ClN4O4/c28-20-9-18(10-22(12-20)36-16-17-5-2-1-3-6-17)23-11-19(24-14-30-27(35)31-25(24)33)15-32(26(23)34)21-7-4-8-29-13-21/h1-15H,16H2,(H2,30,31,33,35)
XF4 InChIKey InChI 1.03 IVPUTCRGJCQUQU-UHFFFAOYSA-N
XF4 SMILES_CANONICAL CACTVS 3.385 Clc1cc(OCc2ccccc2)cc(c1)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O
XF4 SMILES CACTVS 3.385 Clc1cc(OCc2ccccc2)cc(c1)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O
XF4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1ccc(cc1)COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O
XF4 SMILES "OpenEye OEToolkits" 2.0.7 c1ccc(cc1)COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XF4 "SYSTEMATIC NAME" ACDLabs 12.01 "5-{3-[3-(benzyloxy)-5-chlorophenyl]-2-oxo[2H-[1,3'-bipyridine]]-5-yl}pyrimidine-2,4(1H,3H)-dione"
XF4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 5-[5-(3-chloranyl-5-phenylmethoxy-phenyl)-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XF4 'Create component' 2020-12-15 RCSB
XF4 'Modify descriptor' 2020-12-16 RCSB
XF4 'Initial release' 2021-03-03 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
XF4 C1 C 8.196 -3.000 1
XF4 C2 C 9.495 -0.750 2
XF4 C3 C 8.196 -1.500 3
XF4 C4 C 6.897 -0.750 4
XF4 C5 C 5.598 -1.500 5
XF4 C6 C 9.495 -5.250 6
XF4 C7 C 4.299 -0.750 7
XF4 C8 C 4.299 0.750 8
XF4 C9 C 5.598 1.500 9
XF4 C10 C 4.299 3.750 10
XF4 C11 C 4.299 5.250 11
XF4 C12 C 6.897 0.750 12
XF4 C13 C 10.794 -6.000 13
XF4 C14 C 9.495 -8.250 14
XF4 C15 C 8.196 -7.500 15
XF4 C16 C 8.196 -6.000 16
XF4 C17 C 10.794 -3.000 17
XF4 C18 C 10.794 -1.500 18
XF4 C24 C 12.093 -0.750 19
XF4 C25 C 13.392 -1.500 20
XF4 C26 C 12.093 0.750 21
XF4 C30 C 14.691 0.750 22
XF4 C32 C 3.000 6.000 23
XF4 C33 C 3.000 7.500 24
XF4 C34 C 4.299 8.250 25
XF4 C35 C 5.598 7.500 26
XF4 C36 C 5.598 6.000 27
XF4 N19 N 9.495 -3.750 28
XF4 N20 N 10.794 -7.500 29
XF4 N28 N 13.392 1.500 30
XF4 N29 N 14.691 -0.750 31
XF4 O21 O 6.897 -3.750 32
XF4 O22 O 5.598 3.000 33
XF4 O27 O 10.794 1.500 34
XF4 O31 O 15.990 1.500 35
XF4 CL23 Cl 3.000 -1.500 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
XF4 C35 C36 DOUBLE NONE 1
XF4 C35 C34 SINGLE NONE 2
XF4 C36 C11 SINGLE NONE 3
XF4 N29 C25 SINGLE NONE 4
XF4 N29 C30 SINGLE NONE 5
XF4 C34 C33 DOUBLE NONE 6
XF4 O31 C30 DOUBLE NONE 7
XF4 C25 C24 DOUBLE NONE 8
XF4 C30 N28 SINGLE NONE 9
XF4 O22 C9 SINGLE NONE 10
XF4 O22 C10 SINGLE NONE 11
XF4 C11 C10 SINGLE NONE 12
XF4 C11 C32 DOUBLE NONE 13
XF4 C8 C9 DOUBLE NONE 14
XF4 C8 C7 SINGLE NONE 15
XF4 CL23 C7 SINGLE NONE 16
XF4 C9 C12 SINGLE NONE 17
XF4 C33 C32 SINGLE NONE 18
XF4 C7 C5 DOUBLE NONE 19
XF4 C12 C4 DOUBLE NONE 20
XF4 C5 C4 SINGLE NONE 21
XF4 C24 C18 SINGLE NONE 22
XF4 C24 C26 SINGLE NONE 23
XF4 C4 C3 SINGLE NONE 24
XF4 C2 C3 DOUBLE NONE 25
XF4 C2 C18 SINGLE NONE 26
XF4 N28 C26 SINGLE NONE 27
XF4 C3 C1 SINGLE NONE 28
XF4 C18 C17 DOUBLE NONE 29
XF4 C26 O27 DOUBLE NONE 30
XF4 C1 N19 SINGLE NONE 31
XF4 C1 O21 DOUBLE NONE 32
XF4 C17 N19 SINGLE NONE 33
XF4 N19 C6 SINGLE NONE 34
XF4 C16 C6 SINGLE NONE 35
XF4 C16 C15 DOUBLE NONE 36
XF4 C6 C13 DOUBLE NONE 37
XF4 C15 C14 SINGLE NONE 38
XF4 C13 N20 SINGLE NONE 39
XF4 C14 N20 DOUBLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
XF4 MurckoScaffold S1 scaffold 'O=c1[nH]cc(-c2cc(-c3cccc(OCc4ccccc4)c3)c(=O)n(-c3cccnc3)c2)c(=O)[nH]1' InChI=1S/C27H20N4O4/c32-25-24(15-29-27(34)30-25)20-13-23(26(33)31(16-20)21-9-5-11-28-14-21)19-8-4-10-22(12-19)35-17-18-6-2-1-3-7-18/h1-16H,17H2,(H2,29,30,32,34) NYFXWJKMHIZGTQ-UHFFFAOYSA-N
XF4 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
XF4 pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
XF4 pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
XF4 C1 S1 1
XF4 C2 S1 1
XF4 C3 S1 1
XF4 C4 S1 1
XF4 C5 S1 1
XF4 C6 S1 1
XF4 C7 S1 1
XF4 C8 S1 1
XF4 C9 S1 1
XF4 C10 S1 1
XF4 C11 S1 1
XF4 C12 S1 1
XF4 C13 S1 1
XF4 C14 S1 1
XF4 C15 S1 1
XF4 C16 S1 1
XF4 C17 S1 1
XF4 C18 S1 1
XF4 C24 S1 1
XF4 C25 S1 1
XF4 C26 S1 1
XF4 C30 S1 1
XF4 C32 S1 1
XF4 C33 S1 1
XF4 C34 S1 1
XF4 C35 S1 1
XF4 C36 S1 1
XF4 N19 S1 1
XF4 N20 S1 1
XF4 N28 S1 1
XF4 N29 S1 1
XF4 O21 S1 1
XF4 O22 S1 1
XF4 O27 S1 1
XF4 O31 S1 1
XF4 C4 F1 1
XF4 C12 F1 1
XF4 C9 F1 1
XF4 C8 F1 1
XF4 C7 F1 1
XF4 C5 F1 1
XF4 C11 F1 2
XF4 C36 F1 2
XF4 C35 F1 2
XF4 C34 F1 2
XF4 C33 F1 2
XF4 C32 F1 2
XF4 C1 F2 1
XF4 C3 F2 1
XF4 C2 F2 1
XF4 C18 F2 1
XF4 C17 F2 1
XF4 N19 F2 1
XF4 C13 F2 2
XF4 C6 F2 2
XF4 C16 F2 2
XF4 C15 F2 2
XF4 C14 F2 2
XF4 N20 F2 2
XF4 C24 F3 1
XF4 C25 F3 1
XF4 N29 F3 1
XF4 C30 F3 1
XF4 N28 F3 1
XF4 C26 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id XF4
_pdbe_chem_comp_rdkit_properties.exactmw 498.109
_pdbe_chem_comp_rdkit_properties.amw 498.926
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 55
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.037
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 235.825
_pdbe_chem_comp_rdkit_properties.tpsa 109.840
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.408
_pdbe_chem_comp_rdkit_properties.CrippenMR 133.874
_pdbe_chem_comp_rdkit_properties.chi0v 18.056
_pdbe_chem_comp_rdkit_properties.chi1v 9.850
_pdbe_chem_comp_rdkit_properties.chi2v 4.384
_pdbe_chem_comp_rdkit_properties.chi3v 4.384
_pdbe_chem_comp_rdkit_properties.chi4v 2.914
_pdbe_chem_comp_rdkit_properties.chi0n 36.300
_pdbe_chem_comp_rdkit_properties.chi1n 18.866
_pdbe_chem_comp_rdkit_properties.chi2n 4.195
_pdbe_chem_comp_rdkit_properties.chi3n 4.195
_pdbe_chem_comp_rdkit_properties.chi4n 2.734
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.690
_pdbe_chem_comp_rdkit_properties.kappa1 9.752
_pdbe_chem_comp_rdkit_properties.kappa2 9.890
_pdbe_chem_comp_rdkit_properties.kappa3 4.890
_pdbe_chem_comp_rdkit_properties.Phi 2.679
#
_pdbe_chem_comp_external_mappings.comp_id XF4
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 155803730
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
XF4 C1 -1.807 1.769 0.615 ETKDGv3 1
XF4 C2 -1.307 -0.525 -0.008 ETKDGv3 2
XF4 C3 -0.839 0.680 0.356 ETKDGv3 3
XF4 C4 0.621 0.914 0.493 ETKDGv3 4
XF4 C5 1.239 2.115 -0.120 ETKDGv3 5
XF4 C6 -4.179 2.579 0.571 ETKDGv3 6
XF4 C7 2.553 2.337 0.002 ETKDGv3 7
XF4 C8 3.400 1.383 0.747 ETKDGv3 8
XF4 C9 2.857 0.282 1.301 ETKDGv3 9
XF4 C10 5.035 -0.672 2.139 ETKDGv3 10
XF4 C11 5.690 -0.999 0.823 ETKDGv3 11
XF4 C12 1.402 0.047 1.167 ETKDGv3 12
XF4 C13 -5.291 2.391 1.305 ETKDGv3 13
XF4 C14 -6.077 4.615 0.894 ETKDGv3 14
XF4 C15 -4.878 4.867 0.073 ETKDGv3 15
XF4 C16 -3.974 3.895 -0.081 ETKDGv3 16
XF4 C17 -3.645 0.205 0.031 ETKDGv3 17
XF4 C18 -2.758 -0.784 -0.173 ETKDGv3 18
XF4 C24 -3.218 -2.137 -0.577 ETKDGv3 19
XF4 C25 -4.193 -2.754 0.116 ETKDGv3 20
XF4 C26 -2.603 -2.826 -1.739 ETKDGv3 21
XF4 C30 -4.058 -4.773 -1.332 ETKDGv3 22
XF4 C32 5.359 -2.120 0.157 ETKDGv3 23
XF4 C33 6.007 -2.439 -1.133 ETKDGv3 24
XF4 C34 6.933 -1.616 -1.640 ETKDGv3 25
XF4 C35 7.311 -0.389 -0.909 ETKDGv3 26
XF4 C36 6.726 -0.097 0.260 ETKDGv3 27
XF4 N19 -3.211 1.525 0.411 ETKDGv3 28
XF4 N20 -6.249 3.454 1.457 ETKDGv3 29
XF4 N28 -3.023 -4.148 -2.089 ETKDGv3 30
XF4 N29 -4.646 -4.069 -0.236 ETKDGv3 31
XF4 O21 -1.410 2.879 1.062 ETKDGv3 32
XF4 O22 3.612 -0.666 2.013 ETKDGv3 33
XF4 O27 -1.729 -2.248 -2.440 ETKDGv3 34
XF4 O31 -4.451 -5.933 -1.628 ETKDGv3 35
XF4 CL23 3.280 3.755 -0.732 ETKDGv3 36
XF4 H1 -0.613 -1.336 -0.195 ETKDGv3 37
XF4 H2 0.627 2.809 -0.683 ETKDGv3 38
XF4 H3 4.455 1.596 0.834 ETKDGv3 39
XF4 H4 5.320 -1.451 2.877 ETKDGv3 40
XF4 H5 5.386 0.302 2.542 ETKDGv3 41
XF4 H6 0.974 -0.832 1.634 ETKDGv3 42
XF4 H7 -5.469 1.447 1.803 ETKDGv3 43
XF4 H8 -6.816 5.393 1.026 ETKDGv3 44
XF4 H9 -4.737 5.829 -0.403 ETKDGv3 45
XF4 H10 -3.099 4.069 -0.695 ETKDGv3 46
XF4 H11 -4.701 0.017 -0.125 ETKDGv3 47
XF4 H13 -4.644 -2.266 0.972 ETKDGv3 48
XF4 H14 4.614 -2.799 0.554 ETKDGv3 49
XF4 H15 5.730 -3.339 -1.666 ETKDGv3 50
XF4 H16 7.408 -1.848 -2.584 ETKDGv3 51
XF4 H17 8.063 0.271 -1.320 ETKDGv3 52
XF4 H18 7.011 0.803 0.789 ETKDGv3 53
XF4 H19 -2.588 -4.644 -2.899 ETKDGv3 54
XF4 H12 -5.405 -4.517 0.324 ETKDGv3 55
#