data_WWS
#
_chem_comp.id WWS
_chem_comp.name 3-[(5-chloropyridin-2-yl)methyl]-3H-purin-6-amine
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H9 Cl N6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-11-17
_chem_comp.pdbx_modified_date 2022-07-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 260.682
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code WWS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5S6J
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WWS C10 C1 C 0 1 Y N N N N N -45.043 -28.571 1.452 -1.159 -0.118 -1.134 C10 WWS 1
WWS C13 C2 C 0 1 Y N N N N N -43.924 -26.628 0.124 -3.493 0.013 0.257 C13 WWS 2
WWS C15 C3 C 0 1 Y N N N N N -45.290 -26.775 0.003 -2.833 1.194 -0.050 C15 WWS 3
WWS C17 C4 C 0 1 Y N N N N N -47.539 -29.106 3.337 1.604 -1.700 -0.675 C17 WWS 4
WWS C02 C5 C 0 1 Y N N N N N -47.713 -28.889 5.554 3.302 -0.992 0.726 C02 WWS 5
WWS C03 C6 C 0 1 Y N N N N N -46.329 -29.082 5.680 2.985 0.350 0.451 C03 WWS 6
WWS C05 C7 C 0 1 Y N N N N N -44.319 -29.356 6.270 2.762 2.482 0.245 C05 WWS 7
WWS C07 C8 C 0 1 Y N N N N N -45.629 -29.311 4.591 1.918 0.619 -0.436 C07 WWS 8
WWS C09 C9 C 0 1 N N N N N N -45.544 -29.681 2.198 0.129 -0.209 -1.911 C09 WWS 9
WWS C12 C10 C 0 1 Y N N N N N -43.159 -27.482 0.891 -2.943 -1.191 -0.147 C12 WWS 10
WWS C16 C11 C 0 1 Y N N N N N -45.878 -27.814 0.691 -1.645 1.120 -0.760 C16 WWS 11
WWS N01 N1 N 0 1 N N N N N N -48.535 -28.616 6.699 4.330 -1.301 1.581 N01 WWS 12
WWS N04 N2 N 0 1 Y N N N N N -45.509 -29.088 6.752 3.466 1.542 0.839 N04 WWS 13
WWS N06 N3 N 0 1 Y N N N N N -44.360 -29.479 4.941 1.826 1.937 -0.524 N06 WWS 14
WWS N08 N4 N 0 1 Y N N N N N -46.245 -29.315 3.405 1.241 -0.445 -0.987 N08 WWS 15
WWS N11 N5 N 0 1 Y N N N N N -43.773 -28.371 1.535 -1.812 -1.221 -0.825 N11 WWS 16
WWS N18 N6 N 0 1 Y N N N N N -48.262 -28.889 4.392 2.589 -1.961 0.145 N18 WWS 17
WWS CL14 CL1 CL 0 0 N N N N N N -43.120 -25.358 -0.691 -4.982 0.043 1.150 CL14 WWS 18
WWS H151 H1 H 0 0 N N N N N N -45.875 -26.103 -0.607 -3.239 2.148 0.252 H151 WWS 19
WWS H171 H2 H 0 0 N N N N N N -48.018 -29.115 2.369 1.059 -2.523 -1.112 H171 WWS 20
WWS H051 H3 H 0 0 N N N N N N -43.426 -29.463 6.868 2.920 3.543 0.367 H051 WWS 21
WWS H092 H4 H 0 0 N N N N N N -46.236 -30.245 1.555 0.067 -1.032 -2.622 H092 WWS 22
WWS H091 H5 H 0 0 N N N N N N -44.694 -30.323 2.474 0.296 0.724 -2.449 H091 WWS 23
WWS H121 H6 H 0 0 N N N N N N -42.084 -27.392 0.936 -3.449 -2.115 0.089 H121 WWS 24
WWS H161 H7 H 0 0 N N N N N N -46.937 -28.015 0.630 -1.104 2.020 -1.016 H161 WWS 25
WWS H012 H8 H 0 0 N N N N N N -49.477 -28.455 6.403 4.843 -0.593 2.000 H012 WWS 26
WWS H011 H9 H 0 0 N N N N N N -48.510 -29.398 7.321 4.543 -2.229 1.767 H011 WWS 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WWS CL14 C13 SING N N 1
WWS C15 C13 DOUB Y N 2
WWS C15 C16 SING Y N 3
WWS C13 C12 SING Y N 4
WWS C16 C10 DOUB Y N 5
WWS C12 N11 DOUB Y N 6
WWS C10 N11 SING Y N 7
WWS C10 C09 SING N N 8
WWS C09 N08 SING N N 9
WWS C17 N08 SING Y N 10
WWS C17 N18 DOUB Y N 11
WWS N08 C07 SING Y N 12
WWS N18 C02 SING Y N 13
WWS C07 N06 DOUB Y N 14
WWS C07 C03 SING Y N 15
WWS N06 C05 SING Y N 16
WWS C02 C03 DOUB Y N 17
WWS C02 N01 SING N N 18
WWS C03 N04 SING Y N 19
WWS C05 N04 DOUB Y N 20
WWS C15 H151 SING N N 21
WWS C17 H171 SING N N 22
WWS C05 H051 SING N N 23
WWS C09 H092 SING N N 24
WWS C09 H091 SING N N 25
WWS C12 H121 SING N N 26
WWS C16 H161 SING N N 27
WWS N01 H012 SING N N 28
WWS N01 H011 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WWS SMILES ACDLabs 12.01 c1(ncc(cc1)Cl)CN3C=NC(=C2N=CN=C23)N
WWS InChI InChI 1.03 InChI=1S/C11H9ClN6/c12-7-1-2-8(14-3-7)4-18-6-17-10(13)9-11(18)16-5-15-9/h1-3,5-6H,4,13H2
WWS InChIKey InChI 1.03 RILIKBFMMNNYNO-UHFFFAOYSA-N
WWS SMILES_CANONICAL CACTVS 3.385 Nc1ncn(Cc2ccc(Cl)cn2)c3ncnc13
WWS SMILES CACTVS 3.385 Nc1ncn(Cc2ccc(Cl)cn2)c3ncnc13
WWS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(ncc1Cl)Cn2cnc(c-3ncnc23)N
WWS SMILES "OpenEye OEToolkits" 2.0.7 c1cc(ncc1Cl)Cn2cnc(c-3ncnc23)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WWS "SYSTEMATIC NAME" ACDLabs 12.01 3-[(5-chloropyridin-2-yl)methyl]-3H-purin-6-amine
WWS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 3-[(5-chloranylpyridin-2-yl)methyl]purin-6-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WWS 'Create component' 2020-11-17 RCSB
WWS 'Initial release' 2022-07-13 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
WWS C10 C 0.357 -1.917 1
WWS C13 C -2.242 -3.415 2
WWS C15 C -2.241 -1.915 3
WWS C17 C 2.958 1.081 4
WWS C02 C 1.661 3.332 5
WWS C03 C 0.361 2.583 6
WWS C05 C -1.948 1.835 7
WWS C07 C 0.360 1.083 8
WWS C09 C 1.657 -1.168 9
WWS C12 C -0.943 -4.166 10
WWS C16 C -0.941 -1.166 11
WWS N01 N 1.662 4.832 12
WWS N04 N -1.065 3.048 13
WWS N06 N -1.067 0.621 14
WWS N08 N 1.658 0.332 15
WWS N11 N 0.356 -3.417 16
WWS N18 N 2.959 2.581 17
WWS CL14 Cl -3.541 -4.164 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
WWS CL14 C13 SINGLE NONE 1
WWS C15 C13 DOUBLE NONE 2
WWS C15 C16 SINGLE NONE 3
WWS C13 C12 SINGLE NONE 4
WWS C16 C10 DOUBLE NONE 5
WWS C12 N11 DOUBLE NONE 6
WWS C10 N11 SINGLE NONE 7
WWS C10 C09 SINGLE NONE 8
WWS C09 N08 SINGLE NONE 9
WWS C17 N08 SINGLE NONE 10
WWS C17 N18 DOUBLE NONE 11
WWS N08 C07 SINGLE NONE 12
WWS N18 C02 SINGLE NONE 13
WWS C07 N06 DOUBLE NONE 14
WWS C07 C03 SINGLE NONE 15
WWS N06 C05 SINGLE NONE 16
WWS C02 C03 DOUBLE NONE 17
WWS C02 N01 SINGLE NONE 18
WWS C03 N04 SINGLE NONE 19
WWS C05 N04 DOUBLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
WWS MurckoScaffold S1 scaffold c1ccc(Cn2cncc3ncnc2-3)nc1 InChI=1S/C11H9N5/c1-2-4-13-9(3-1)6-16-8-12-5-10-11(16)15-7-14-10/h1-5,7-8H,6H2 XADUSCWWZYRXKR-UHFFFAOYSA-N
WWS pyridine F1 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
WWS C10 S1 1
WWS C13 S1 1
WWS C15 S1 1
WWS C17 S1 1
WWS C02 S1 1
WWS C03 S1 1
WWS C05 S1 1
WWS C07 S1 1
WWS C09 S1 1
WWS C12 S1 1
WWS C16 S1 1
WWS N04 S1 1
WWS N06 S1 1
WWS N08 S1 1
WWS N11 S1 1
WWS N18 S1 1
WWS C10 F1 1
WWS C16 F1 1
WWS C15 F1 1
WWS C13 F1 1
WWS C12 F1 1
WWS N11 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id WWS
_pdbe_chem_comp_rdkit_properties.exactmw 260.058
_pdbe_chem_comp_rdkit_properties.amw 260.688
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.091
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 120.591
_pdbe_chem_comp_rdkit_properties.tpsa 82.510
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.641
_pdbe_chem_comp_rdkit_properties.CrippenMR 64.788
_pdbe_chem_comp_rdkit_properties.chi0v 9.317
_pdbe_chem_comp_rdkit_properties.chi1v 5.000
_pdbe_chem_comp_rdkit_properties.chi2v 2.162
_pdbe_chem_comp_rdkit_properties.chi3v 2.162
_pdbe_chem_comp_rdkit_properties.chi4v 1.330
_pdbe_chem_comp_rdkit_properties.chi0n 17.561
_pdbe_chem_comp_rdkit_properties.chi1n 9.017
_pdbe_chem_comp_rdkit_properties.chi2n 1.983
_pdbe_chem_comp_rdkit_properties.chi3n 1.983
_pdbe_chem_comp_rdkit_properties.chi4n 1.241
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.210
_pdbe_chem_comp_rdkit_properties.kappa1 4.813
_pdbe_chem_comp_rdkit_properties.kappa2 4.229
_pdbe_chem_comp_rdkit_properties.kappa3 1.864
_pdbe_chem_comp_rdkit_properties.Phi 1.131
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
WWS C10 -1.818 0.140 0.787 ETKDGv3 1
WWS C13 -3.845 -0.424 -1.063 ETKDGv3 2
WWS C15 -3.229 0.763 -1.098 ETKDGv3 3
WWS C17 0.988 -1.443 1.264 ETKDGv3 4
WWS C02 2.925 -0.970 -0.119 ETKDGv3 5
WWS C03 2.568 0.309 -0.226 ETKDGv3 6
WWS C05 2.370 2.372 -0.678 ETKDGv3 7
WWS C07 1.402 0.796 0.400 ETKDGv3 8
WWS C09 -0.701 0.388 1.758 ETKDGv3 9
WWS C12 -3.436 -1.418 -0.051 ETKDGv3 10
WWS C16 -2.156 1.062 -0.130 ETKDGv3 11
WWS N01 4.099 -1.474 -0.756 ETKDGv3 12
WWS N04 3.177 1.376 -0.926 ETKDGv3 13
WWS N06 1.236 2.049 0.154 ETKDGv3 14
WWS N08 0.567 -0.060 1.183 ETKDGv3 15
WWS N11 -2.490 -1.133 0.797 ETKDGv3 16
WWS N18 2.080 -1.850 0.660 ETKDGv3 17
WWS CL14 -5.120 -0.801 -2.206 ETKDGv3 18
WWS H151 -3.509 1.507 -1.834 ETKDGv3 19
WWS H171 0.396 -2.156 1.824 ETKDGv3 20
WWS H051 2.542 3.365 -1.071 ETKDGv3 21
WWS H092 -0.644 1.466 2.026 ETKDGv3 22
WWS H091 -0.902 -0.166 2.700 ETKDGv3 23
WWS H121 -3.919 -2.385 -0.012 ETKDGv3 24
WWS H161 -1.651 2.019 -0.173 ETKDGv3 25
WWS H012 4.718 -0.852 -1.323 ETKDGv3 26
WWS H011 4.353 -2.481 -0.657 ETKDGv3 27
#