data_WK1
#
_chem_comp.id WK1
_chem_comp.name
"(2S)-3-[(2S,4E)-4-[[(1R,2S,4aR,6S,8R,8aS)-2-[(E)-but-2-en-2-yl]-6,8-dimethyl-1,2,4a,5,6,7,8,8a-octahydronaphthalen-1-yl]-oxidanyl-methylidene]-3,5-bis(oxidanylidene)pyrrolidin-2-yl]-2-methyl-2-oxidanyl-propanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H35 N O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-07-03
_chem_comp.pdbx_modified_date 2020-06-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 445.549
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code WK1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6KBC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WK1 O O1 O 0 1 N N N N N N -38.133 -2.835 -10.868 5.844 1.042 -0.932 O WK1 1
WK1 C17 C1 C 0 1 N N N N N N -38.208 -3.645 -9.953 5.998 0.190 -0.090 C17 WK1 2
WK1 O1 O2 O 0 1 N N N N N N -39.158 -3.579 -9.051 6.937 0.344 0.857 O1 WK1 3
WK1 C19 C2 C 0 1 N N S N N N -37.231 -4.756 -9.833 5.133 -1.044 -0.099 C19 WK1 4
WK1 O2 O3 O 0 1 N N N N N N -37.488 -5.528 -8.658 4.876 -1.456 1.245 O2 WK1 5
WK1 C18 C3 C 0 1 N N N N N N -35.837 -4.147 -9.675 5.855 -2.168 -0.846 C18 WK1 6
WK1 C20 C4 C 0 1 N N N N N N -37.520 -5.617 -11.062 3.809 -0.734 -0.800 C20 WK1 7
WK1 C22 C5 C 0 1 N N S N N N -36.400 -6.599 -11.248 3.058 0.344 -0.016 C22 WK1 8
WK1 N N1 N 0 1 N N N N N N -36.478 -7.442 -12.454 2.565 -0.206 1.248 N100 WK1 9
WK1 C21 C6 C 0 1 N N N N N N -36.146 -8.716 -12.190 1.227 -0.128 1.296 C21 WK1 10
WK1 O5 O4 O 0 1 N N N N N N -36.086 -9.597 -13.120 0.546 -0.510 2.229 O5 WK1 11
WK1 C23 C7 C 0 1 N N N N N N -36.142 -7.623 -10.219 1.841 0.796 -0.793 C23 WK1 12
WK1 O4 O5 O 0 1 N N N N N N -35.994 -7.415 -8.955 1.816 1.308 -1.893 O4 WK1 13
WK1 C24 C8 C 0 1 N N N N N N -35.912 -8.953 -10.733 0.697 0.481 0.069 C24 WK1 14
WK1 C16 C9 C 0 1 N N N N N N -35.565 -10.144 -9.928 -0.631 0.713 -0.219 C16 WK1 15
WK1 O3 O6 O 0 1 N N N N N N -35.403 -9.978 -8.620 -0.975 1.280 -1.385 O3 WK1 16
WK1 C9 C10 C 0 1 N N R N N N -35.249 -11.393 -10.672 -1.696 0.331 0.776 C9 WK1 17
WK1 C8 C11 C 0 1 N N S N N N -33.713 -11.137 -11.023 -2.351 1.594 1.344 C8 WK1 18
WK1 C12 C12 C 0 1 N N N N N N -33.221 -9.715 -11.397 -2.665 2.540 0.213 C12 WK1 19
WK1 C13 C13 C 0 1 N N N N N N -33.121 -9.355 -12.709 -3.755 2.375 -0.494 C13 WK1 20
WK1 C90 C14 C 0 1 N N N N N N -32.649 -7.985 -13.158 -4.054 3.301 -1.645 C90 WK1 21
WK1 C14 C15 C 0 1 N N N N N N -32.826 -8.687 -10.326 -1.726 3.675 -0.102 C14 WK1 22
WK1 C7 C16 C 0 1 N N N N N N -32.822 -11.577 -9.870 -3.617 1.257 2.072 C7 WK1 23
WK1 C6 C17 C 0 1 N N N N N N -33.067 -12.741 -9.309 -4.238 0.121 1.986 C6 WK1 24
WK1 C3 C18 C 0 1 N N R N N N -34.196 -13.548 -9.871 -3.744 -1.016 1.148 C3 WK1 25
WK1 C4 C19 C 0 1 N N S N N N -35.477 -12.721 -9.924 -2.778 -0.496 0.081 C4 WK1 26
WK1 C5 C20 C 0 1 N N R N N N -36.587 -13.570 -10.544 -2.174 -1.684 -0.664 C5 WK1 27
WK1 C11 C21 C 0 1 N N N N N N -37.924 -12.839 -10.509 -1.187 -1.180 -1.718 C11 WK1 28
WK1 C2 C22 C 0 1 N N N N N N -34.380 -14.800 -9.056 -4.888 -1.762 0.466 C2 WK1 29
WK1 C1 C23 C 0 1 N N S N N N -35.315 -15.653 -9.864 -4.309 -2.952 -0.306 C1 WK1 30
WK1 C10 C24 C 0 1 N N N N N N -35.354 -17.047 -9.279 -5.444 -3.701 -1.009 C10 WK1 31
WK1 C C25 C 0 1 N N N N N N -36.665 -14.947 -9.874 -3.303 -2.462 -1.348 C WK1 32
WK1 H16 H1 H 0 1 N N N N N N -39.723 -2.839 -9.239 7.464 1.154 0.825 H16 WK1 33
WK1 H23 H2 H 0 1 N N N N N N -36.947 -6.309 -8.667 4.655 -0.728 1.844 H23 WK1 34
WK1 H26 H3 H 0 1 N N N N N N -35.796 -3.561 -8.745 6.835 -2.330 -0.399 H26 WK1 35
WK1 H25 H4 H 0 1 N N N N N N -35.088 -4.952 -9.635 5.268 -3.084 -0.779 H25 WK1 36
WK1 H24 H5 H 0 1 N N N N N N -35.624 -3.491 -10.532 5.975 -1.889 -1.893 H24 WK1 37
WK1 H27 H6 H 0 1 N N N N N N -37.598 -4.975 -11.952 4.008 -0.377 -1.810 H27 WK1 38
WK1 H28 H7 H 0 1 N N N N N N -38.466 -6.160 -10.917 3.203 -1.638 -0.848 H28 WK1 39
WK1 H221 H8 H 0 0 N N N N N N -35.479 -6.004 -11.338 3.715 1.192 0.175 H221 WK1 40
WK1 H29 H9 H 0 1 N N N N N N -36.745 -7.107 -13.357 3.126 -0.575 1.949 H29 WK1 41
WK1 HO3 H12 H 0 1 N N N N N N -35.561 -9.069 -8.394 -1.920 1.352 -1.576 HO3 WK1 42
WK1 H91 H13 H 0 1 N N N N N N -35.817 -11.414 -11.614 -1.252 -0.250 1.585 H91 WK1 43
WK1 HF3 H14 H 0 1 N N N N N N -33.480 -11.788 -11.878 -1.658 2.078 2.033 HF3 WK1 44
WK1 H150 H15 H 0 0 N N N N N N -33.390 -10.079 -13.463 -4.440 1.575 -0.253 H150 WK1 45
WK1 H902 H16 H 0 0 N N N N N N -32.654 -7.937 -14.257 -4.995 3.010 -2.111 H902 WK1 46
WK1 H90 H17 H 0 1 N N N N N N -33.322 -7.215 -12.754 -4.131 4.324 -1.277 H90 WK1 47
WK1 H901 H18 H 0 0 N N N N N N -31.628 -7.810 -12.788 -3.250 3.239 -2.379 H901 WK1 48
WK1 H18 H19 H 0 1 N N N N N N -32.962 -9.127 -9.327 -1.042 3.371 -0.894 H18 WK1 49
WK1 H10 H20 H 0 1 N N N N N N -31.772 -8.403 -10.461 -2.301 4.541 -0.431 H10 WK1 50
WK1 H19 H21 H 0 1 N N N N N N -33.461 -7.794 -10.423 -1.157 3.935 0.790 H19 WK1 51
WK1 H8 H22 H 0 1 N N N N N N -32.013 -10.952 -9.523 -4.043 2.014 2.714 H8 WK1 52
WK1 H7 H23 H 0 1 N N N N N N -32.478 -13.100 -8.478 -5.153 -0.010 2.545 H7 WK1 53
WK1 HF1 H24 H 0 1 N N N N N N -33.936 -13.840 -10.899 -3.201 -1.714 1.787 HF1 WK1 54
WK1 H41 H25 H 0 1 N N N N N N -35.770 -12.480 -8.891 -3.321 0.135 -0.623 H41 WK1 55
WK1 HH4 H26 H 0 1 N N N N N N -36.327 -13.733 -11.600 -1.656 -2.333 0.042 HH4 WK1 56
WK1 H13 H27 H 0 1 N N N N N N -38.701 -13.473 -10.961 -0.262 -0.872 -1.232 H13 WK1 57
WK1 H12 H28 H 0 1 N N N N N N -38.193 -12.617 -9.466 -0.975 -1.979 -2.429 H12 WK1 58
WK1 H11 H29 H 0 1 N N N N N N -37.843 -11.899 -11.075 -1.621 -0.331 -2.246 H11 WK1 59
WK1 H5 H30 H 0 1 N N N N N N -33.417 -15.312 -8.910 -5.590 -2.121 1.219 H5 WK1 60
WK1 H6 H31 H 0 1 N N N N N N -34.821 -14.563 -8.077 -5.402 -1.091 -0.223 H6 WK1 61
WK1 HF2 H32 H 0 1 N N N N N N -34.941 -15.712 -10.897 -3.808 -3.625 0.389 HF2 WK1 62
WK1 H17 H33 H 0 1 N N N N N N -34.346 -17.486 -9.308 -5.949 -3.028 -1.702 H17 WK1 63
WK1 H15 H34 H 0 1 N N N N N N -35.702 -16.998 -8.237 -5.034 -4.548 -1.559 H15 WK1 64
WK1 H14 H35 H 0 1 N N N N N N -36.043 -17.672 -9.866 -6.156 -4.060 -0.266 H14 WK1 65
WK1 H4 H36 H 0 1 N N N N N N -37.006 -14.818 -8.836 -3.810 -1.812 -2.062 H4 WK1 66
WK1 H3 H37 H 0 1 N N N N N N -37.387 -15.569 -10.423 -2.884 -3.319 -1.876 H3 WK1 67
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WK1 C90 C13 SING N N 1
WK1 O5 C21 DOUB N N 2
WK1 C13 C12 DOUB N E 3
WK1 N C21 SING N N 4
WK1 N C22 SING N N 5
WK1 C21 C24 SING N N 6
WK1 C12 C8 SING N N 7
WK1 C12 C14 SING N N 8
WK1 C22 C20 SING N N 9
WK1 C22 C23 SING N N 10
WK1 C20 C19 SING N N 11
WK1 C8 C9 SING N N 12
WK1 C8 C7 SING N N 13
WK1 O C17 DOUB N N 14
WK1 C24 C23 SING N N 15
WK1 C24 C16 DOUB N E 16
WK1 C9 C16 SING N N 17
WK1 C9 C4 SING N N 18
WK1 C5 C11 SING N N 19
WK1 C5 C4 SING N N 20
WK1 C5 C SING N N 21
WK1 C23 O4 DOUB N N 22
WK1 C17 C19 SING N N 23
WK1 C17 O1 SING N N 24
WK1 C16 O3 SING N N 25
WK1 C4 C3 SING N N 26
WK1 C C1 SING N N 27
WK1 C3 C6 SING N N 28
WK1 C3 C2 SING N N 29
WK1 C7 C6 DOUB N N 30
WK1 C1 C10 SING N N 31
WK1 C1 C2 SING N N 32
WK1 C19 C18 SING N N 33
WK1 C19 O2 SING N N 34
WK1 O1 H16 SING N N 35
WK1 O2 H23 SING N N 36
WK1 C18 H26 SING N N 37
WK1 C18 H25 SING N N 38
WK1 C18 H24 SING N N 39
WK1 C20 H27 SING N N 40
WK1 C20 H28 SING N N 41
WK1 C22 H221 SING N N 42
WK1 N H29 SING N N 43
WK1 O3 HO3 SING N N 44
WK1 C9 H91 SING N N 45
WK1 C8 HF3 SING N N 46
WK1 C13 H150 SING N N 47
WK1 C90 H902 SING N N 48
WK1 C90 H90 SING N N 49
WK1 C90 H901 SING N N 50
WK1 C14 H18 SING N N 51
WK1 C14 H10 SING N N 52
WK1 C14 H19 SING N N 53
WK1 C7 H8 SING N N 54
WK1 C6 H7 SING N N 55
WK1 C3 HF1 SING N N 56
WK1 C4 H41 SING N N 57
WK1 C5 HH4 SING N N 58
WK1 C11 H13 SING N N 59
WK1 C11 H12 SING N N 60
WK1 C11 H11 SING N N 61
WK1 C2 H5 SING N N 62
WK1 C2 H6 SING N N 63
WK1 C1 HF2 SING N N 64
WK1 C10 H17 SING N N 65
WK1 C10 H15 SING N N 66
WK1 C10 H14 SING N N 67
WK1 C H4 SING N N 68
WK1 C H3 SING N N 69
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WK1 InChI InChI 1.03 InChI=1S/C25H35NO6/c1-6-13(3)16-8-7-15-10-12(2)9-14(4)18(15)19(16)22(28)20-21(27)17(26-23(20)29)11-25(5,32)24(30)31/h6-8,12,14-19,28,32H,9-11H2,1-5H3,(H,26,29)(H,30,31)/b13-6+,22-20+/t12-,14+,15-,16+,17-,18-,19-,25-/m0/s1
WK1 InChIKey InChI 1.03 AVZATKWNGXCSDN-RQCLIRHHSA-N
WK1 SMILES_CANONICAL CACTVS 3.385 C\C=C(C)\[C@H]1C=C[C@H]2C[C@@H](C)C[C@@H](C)[C@@H]2[C@H]1C(\O)=C3/C(=O)N[C@@H](C[C@](C)(O)C(O)=O)C3=O
WK1 SMILES CACTVS 3.385 CC=C(C)[CH]1C=C[CH]2C[CH](C)C[CH](C)[CH]2[CH]1C(O)=C3C(=O)N[CH](C[C](C)(O)C(O)=O)C3=O
WK1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C/C=C(\C)/[C@H]1C=C[C@H]2C[C@H](C[C@H]([C@@H]2[C@H]1/C(=C\3/C(=O)[C@@H](NC3=O)C[C@@](C)(C(=O)O)O)/O)C)C
WK1 SMILES "OpenEye OEToolkits" 2.0.7 CC=C(C)C1C=CC2CC(CC(C2C1C(=C3C(=O)C(NC3=O)CC(C)(C(=O)O)O)O)C)C
#
_pdbx_chem_comp_identifier.comp_id WK1
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"(2~{S})-3-[(2~{S},4~{E})-4-[[(1~{R},2~{S},4~{a}~{R},6~{S},8~{R},8~{a}~{S})-2-[(~{E})-but-2-en-2-yl]-6,8-dimethyl-1,2,4~{a},5,6,7,8,8~{a}-octahydronaphthalen-1-yl]-oxidanyl-methylidene]-3,5-bis(oxidanylidene)pyrrolidin-2-yl]-2-methyl-2-oxidanyl-propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WK1 'Create component' 2019-07-03 PDBJ
WK1 'Modify coordinates' 2019-08-09 PDBJ
WK1 'Initial release' 2020-06-24 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
WK1 O O 3.925 -5.258 1
WK1 C17 C 4.535 -3.887 2
WK1 O1 O 3.653 -2.674 3
WK1 C19 C 6.027 -3.730 4
WK1 O2 O 5.870 -2.239 5
WK1 C18 C 6.184 -5.222 6
WK1 C20 C 7.519 -3.574 7
WK1 C22 C 8.129 -2.203 8
WK1 N N 7.379 -0.904 9
WK1 C21 C 8.383 0.210 10
WK1 O5 O 6.956 0.674 11
WK1 C23 C 9.596 -1.891 12
WK1 O4 O 10.711 -2.895 13
WK1 C24 C 9.753 -0.400 14
WK1 C16 C 11.052 0.350 15
WK1 O3 O 12.351 -0.400 16
WK1 C9 C 11.052 1.850 17
WK1 C8 C 9.753 2.600 18
WK1 C12 C 8.454 3.350 19
WK1 C13 C 8.454 4.850 20
WK1 C90 C 7.155 5.600 21
WK1 C14 C 7.155 2.600 22
WK1 C7 C 9.753 4.100 23
WK1 C6 C 11.052 4.850 24
WK1 C3 C 12.351 4.100 25
WK1 C4 C 12.351 2.600 26
WK1 C5 C 13.692 1.798 27
WK1 C11 C 13.674 0.298 28
WK1 C2 C 13.692 4.902 29
WK1 C1 C 15.051 4.132 30
WK1 C10 C 16.347 4.886 31
WK1 C C 15.051 2.569 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
WK1 C90 C13 SINGLE ENDUPRIGHT 1
WK1 O5 C21 DOUBLE NONE 2
WK1 C13 C12 DOUBLE NONE 3
WK1 N C21 SINGLE NONE 4
WK1 N C22 SINGLE NONE 5
WK1 C21 C24 SINGLE ENDUPRIGHT 6
WK1 C8 C12 SINGLE BEGINWEDGE 7
WK1 C12 C14 SINGLE ENDDOWNRIGHT 8
WK1 C22 C20 SINGLE BEGINDASH 9
WK1 C22 C23 SINGLE NONE 10
WK1 C20 C19 SINGLE NONE 11
WK1 C8 C9 SINGLE NONE 12
WK1 C8 C7 SINGLE NONE 13
WK1 O C17 DOUBLE NONE 14
WK1 C24 C23 SINGLE ENDUPRIGHT 15
WK1 C24 C16 DOUBLE NONE 16
WK1 C9 C16 SINGLE BEGINWEDGE 17
WK1 C9 C4 SINGLE NONE 18
WK1 C5 C11 SINGLE BEGINWEDGE 19
WK1 C5 C4 SINGLE NONE 20
WK1 C5 C SINGLE NONE 21
WK1 C23 O4 DOUBLE NONE 22
WK1 C17 C19 SINGLE NONE 23
WK1 C17 O1 SINGLE NONE 24
WK1 C16 O3 SINGLE ENDUPRIGHT 25
WK1 C4 C3 SINGLE NONE 26
WK1 C C1 SINGLE NONE 27
WK1 C3 C6 SINGLE NONE 28
WK1 C3 C2 SINGLE NONE 29
WK1 C7 C6 DOUBLE NONE 30
WK1 C1 C10 SINGLE BEGINWEDGE 31
WK1 C1 C2 SINGLE NONE 32
WK1 C19 C18 SINGLE BEGINDASH 33
WK1 C19 O2 SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
WK1 MurckoScaffold S1 scaffold 'O=C1CNC(=O)/C1=C\[C@H]1CC=C[C@H]2CCCC[C@@H]21' InChI=1S/C15H19NO2/c17-14-9-16-15(18)13(14)8-11-6-3-5-10-4-1-2-7-12(10)11/h3,5,8,10-12H,1-2,4,6-7,9H2,(H,16,18)/b13-8-/t10-,11-,12+/m1/s1 DKQJVEDSRGKEIJ-ZJQKZQSUSA-N
WK1 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
WK1 cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
WK1 peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
WK1 C22 S1 1
WK1 N S1 1
WK1 C21 S1 1
WK1 O5 S1 1
WK1 C23 S1 1
WK1 O4 S1 1
WK1 C24 S1 1
WK1 C16 S1 1
WK1 C9 S1 1
WK1 C8 S1 1
WK1 C7 S1 1
WK1 C6 S1 1
WK1 C3 S1 1
WK1 C4 S1 1
WK1 C5 S1 1
WK1 C2 S1 1
WK1 C1 S1 1
WK1 C S1 1
WK1 N F1 1
WK1 C21 F1 1
WK1 O5 F1 1
WK1 C24 F1 1
WK1 C3 F2 1
WK1 C4 F2 1
WK1 C5 F2 1
WK1 C F2 1
WK1 C1 F2 1
WK1 C2 F2 1
WK1 O4 F3 1
WK1 C23 F3 1
WK1 C22 F3 1
WK1 N F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id WK1
_pdbe_chem_comp_rdkit_properties.exactmw 445.246
_pdbe_chem_comp_rdkit_properties.amw 445.556
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 67
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.640
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 8
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 238.321
_pdbe_chem_comp_rdkit_properties.tpsa 123.930
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.159
_pdbe_chem_comp_rdkit_properties.CrippenMR 119.562
_pdbe_chem_comp_rdkit_properties.chi0v 15.397
_pdbe_chem_comp_rdkit_properties.chi1v 8.172
_pdbe_chem_comp_rdkit_properties.chi2v 4.093
_pdbe_chem_comp_rdkit_properties.chi3v 4.093
_pdbe_chem_comp_rdkit_properties.chi4v 2.716
_pdbe_chem_comp_rdkit_properties.chi0n 50.397
_pdbe_chem_comp_rdkit_properties.chi1n 25.344
_pdbe_chem_comp_rdkit_properties.chi2n 4.093
_pdbe_chem_comp_rdkit_properties.chi3n 4.093
_pdbe_chem_comp_rdkit_properties.chi4n 2.716
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.410
_pdbe_chem_comp_rdkit_properties.kappa1 5.455
_pdbe_chem_comp_rdkit_properties.kappa2 8.850
_pdbe_chem_comp_rdkit_properties.kappa3 4.270
_pdbe_chem_comp_rdkit_properties.Phi 1.508
#
_pdbe_chem_comp_external_mappings.comp_id WK1
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 146673005
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
WK1 O 6.731 1.400 0.354 ETKDGv3 1
WK1 C17 6.495 0.271 0.866 ETKDGv3 2
WK1 O1 6.948 -0.002 2.154 ETKDGv3 3
WK1 C19 5.693 -0.776 0.123 ETKDGv3 4
WK1 O2 6.363 -2.003 0.293 ETKDGv3 5
WK1 C18 5.628 -0.456 -1.387 ETKDGv3 6
WK1 C20 4.273 -0.886 0.747 ETKDGv3 7
WK1 C22 3.416 0.405 0.659 ETKDGv3 8
WK1 N 2.665 0.597 1.896 ETKDGv3 9
WK1 C21 1.270 0.601 1.632 ETKDGv3 10
WK1 O5 0.420 0.805 2.537 ETKDGv3 11
WK1 C23 2.337 0.302 -0.385 ETKDGv3 12
WK1 O4 2.564 0.170 -1.617 ETKDGv3 13
WK1 C24 0.997 0.399 0.208 ETKDGv3 14
WK1 C16 -0.171 0.346 -0.473 ETKDGv3 15
WK1 O3 -0.108 0.243 -1.865 ETKDGv3 16
WK1 C9 -1.547 0.431 0.192 ETKDGv3 17
WK1 C8 -2.207 1.832 -0.017 ETKDGv3 18
WK1 C12 -1.241 2.991 0.230 ETKDGv3 19
WK1 C13 -1.142 3.498 1.480 ETKDGv3 20
WK1 C90 -0.192 4.599 1.855 ETKDGv3 21
WK1 C14 -0.340 3.503 -0.876 ETKDGv3 22
WK1 C7 -2.909 1.911 -1.353 ETKDGv3 23
WK1 C6 -3.679 0.889 -1.743 ETKDGv3 24
WK1 C3 -3.840 -0.307 -0.835 ETKDGv3 25
WK1 C4 -2.468 -0.768 -0.278 ETKDGv3 26
WK1 C5 -2.689 -1.824 0.850 ETKDGv3 27
WK1 C11 -1.438 -2.697 1.049 ETKDGv3 28
WK1 C2 -4.551 -1.469 -1.563 ETKDGv3 29
WK1 C1 -4.417 -2.837 -0.835 ETKDGv3 30
WK1 C10 -3.531 -3.820 -1.617 ETKDGv3 31
WK1 C -3.961 -2.696 0.636 ETKDGv3 32
WK1 H16 7.473 0.688 2.678 ETKDGv3 33
WK1 H23 5.847 -2.706 -0.184 ETKDGv3 34
WK1 H26 6.649 -0.478 -1.825 ETKDGv3 35
WK1 H25 5.008 -1.211 -1.917 ETKDGv3 36
WK1 H24 5.194 0.549 -1.572 ETKDGv3 37
WK1 H27 3.727 -1.736 0.280 ETKDGv3 38
WK1 H28 4.398 -1.170 1.816 ETKDGv3 39
WK1 H221 4.030 1.311 0.470 ETKDGv3 40
WK1 H29 3.093 0.770 2.833 ETKDGv3 41
WK1 HO3 -0.932 0.267 -2.452 ETKDGv3 42
WK1 H91 -1.433 0.337 1.283 ETKDGv3 43
WK1 HF3 -3.027 1.912 0.734 ETKDGv3 44
WK1 H150 -1.769 3.097 2.272 ETKDGv3 45
WK1 H902 -0.401 5.508 1.252 ETKDGv3 46
WK1 H90 0.856 4.272 1.693 ETKDGv3 47
WK1 H901 -0.319 4.851 2.929 ETKDGv3 48
WK1 H18 -0.569 4.568 -1.086 ETKDGv3 49
WK1 H10 0.725 3.406 -0.577 ETKDGv3 50
WK1 H19 -0.469 2.929 -1.815 ETKDGv3 51
WK1 H8 -2.809 2.780 -1.996 ETKDGv3 52
WK1 H7 -4.174 0.929 -2.709 ETKDGv3 53
WK1 HF1 -4.480 0.012 0.019 ETKDGv3 54
WK1 H41 -1.964 -1.293 -1.117 ETKDGv3 55
WK1 HH4 -2.853 -1.286 1.811 ETKDGv3 56
WK1 H13 -0.557 -2.063 1.279 ETKDGv3 57
WK1 H12 -1.587 -3.390 1.904 ETKDGv3 58
WK1 H11 -1.217 -3.294 0.141 ETKDGv3 59
WK1 H5 -4.162 -1.553 -2.602 ETKDGv3 60
WK1 H6 -5.630 -1.211 -1.654 ETKDGv3 61
WK1 HF2 -5.430 -3.300 -0.809 ETKDGv3 62
WK1 H17 -3.999 -4.046 -2.599 ETKDGv3 63
WK1 H15 -3.426 -4.776 -1.061 ETKDGv3 64
WK1 H14 -2.523 -3.401 -1.806 ETKDGv3 65
WK1 H4 -4.799 -2.220 1.193 ETKDGv3 66
WK1 H3 -3.840 -3.702 1.095 ETKDGv3 67
#