data_WJ7
#
_chem_comp.id WJ7
_chem_comp.name 2-bromo-4-fluoro-N,N-dimethylbenzamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H9 Br F N O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-10-30
_chem_comp.pdbx_modified_date 2020-11-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 246.076
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code WJ7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5RZQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WJ7 C4 C1 C 0 1 Y N N N N N -11.256 3.880 -4.995 -0.565 1.980 -0.453 C4 WJ7 1
WJ7 C5 C2 C 0 1 Y N N N N N -12.035 2.986 -5.753 -1.931 2.085 -0.306 C5 WJ7 2
WJ7 C6 C3 C 0 1 Y N N N N N -11.420 2.272 -6.809 -2.690 0.960 -0.020 C6 WJ7 3
WJ7 C7 C4 C 0 1 Y N N N N N -10.079 2.431 -7.096 -2.079 -0.277 0.119 C7 WJ7 4
WJ7 C8 C5 C 0 1 Y N N N N N -9.375 3.339 -6.337 -0.712 -0.394 -0.026 C8 WJ7 5
WJ7 N N1 N 0 1 N N N N N N -8.717 6.294 -5.010 2.340 1.410 0.242 N WJ7 6
WJ7 C C6 C 0 1 N N N N N N -8.064 7.298 -4.136 3.790 1.208 0.182 C WJ7 7
WJ7 O O1 O 0 1 N N N N N N -8.780 4.779 -3.309 1.984 -0.195 -1.252 O WJ7 8
WJ7 C1 C7 C 0 1 N N N N N N -8.845 6.662 -6.438 1.783 2.473 1.081 C1 WJ7 9
WJ7 C2 C8 C 0 1 N N N N N N -9.099 5.045 -4.462 1.519 0.618 -0.476 C2 WJ7 10
WJ7 C3 C9 C 0 1 Y N N N N N -9.908 4.068 -5.285 0.056 0.736 -0.319 C3 WJ7 11
WJ7 F F1 F 0 1 N N N N N N -12.126 1.464 -7.581 -4.029 1.069 0.123 F WJ7 12
WJ7 BR BR1 BR 0 0 N N N N N N -7.575 3.650 -6.892 0.120 -2.081 0.166 BR WJ7 13
WJ7 H6 H1 H 0 1 N N N N N N -11.709 4.425 -4.180 0.024 2.858 -0.676 H6 WJ7 14
WJ7 H7 H2 H 0 1 N N N N N N -13.083 2.847 -5.533 -2.413 3.046 -0.414 H7 WJ7 15
WJ7 H8 H3 H 0 1 N N N N N N -9.602 1.866 -7.883 -2.675 -1.150 0.342 H8 WJ7 16
WJ7 H2 H4 H 0 1 N N N N N N -8.025 6.917 -3.105 4.208 1.812 -0.623 H2 WJ7 17
WJ7 H H5 H 0 1 N N N N N N -7.042 7.487 -4.495 4.238 1.505 1.130 H WJ7 18
WJ7 H1 H6 H 0 1 N N N N N N -8.640 8.235 -4.160 4.003 0.155 -0.005 H1 WJ7 19
WJ7 H4 H7 H 0 1 N N N N N N -9.341 5.846 -6.984 1.046 2.049 1.764 H4 WJ7 20
WJ7 H5 H8 H 0 1 N N N N N N -9.444 7.580 -6.528 2.583 2.941 1.655 H5 WJ7 21
WJ7 H3 H9 H 0 1 N N N N N N -7.845 6.833 -6.863 1.304 3.221 0.450 H3 WJ7 22
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WJ7 C N SING N N 1
WJ7 C1 N SING N N 2
WJ7 N C2 SING N N 3
WJ7 O C2 DOUB N N 4
WJ7 C2 C3 SING N N 5
WJ7 C3 C4 SING Y N 6
WJ7 C4 C5 DOUB Y N 7
WJ7 C5 C6 SING Y N 8
WJ7 F C6 SING N N 9
WJ7 C6 C7 DOUB Y N 10
WJ7 C7 C8 SING Y N 11
WJ7 C3 C8 DOUB Y N 12
WJ7 C8 BR SING N N 13
WJ7 C4 H6 SING N N 14
WJ7 C5 H7 SING N N 15
WJ7 C7 H8 SING N N 16
WJ7 C H2 SING N N 17
WJ7 C H SING N N 18
WJ7 C H1 SING N N 19
WJ7 C1 H4 SING N N 20
WJ7 C1 H5 SING N N 21
WJ7 C1 H3 SING N N 22
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WJ7 SMILES ACDLabs 12.01 c1cc(cc(Br)c1C(N(C)C)=O)F
WJ7 InChI InChI 1.03 InChI=1S/C9H9BrFNO/c1-12(2)9(13)7-4-3-6(11)5-8(7)10/h3-5H,1-2H3
WJ7 InChIKey InChI 1.03 CGUIJOTZYHWBSQ-UHFFFAOYSA-N
WJ7 SMILES_CANONICAL CACTVS 3.385 CN(C)C(=O)c1ccc(F)cc1Br
WJ7 SMILES CACTVS 3.385 CN(C)C(=O)c1ccc(F)cc1Br
WJ7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CN(C)C(=O)c1ccc(cc1Br)F
WJ7 SMILES "OpenEye OEToolkits" 2.0.7 CN(C)C(=O)c1ccc(cc1Br)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WJ7 "SYSTEMATIC NAME" ACDLabs 12.01 2-bromo-4-fluoro-N,N-dimethylbenzamide
WJ7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 2-bromanyl-4-fluoranyl-~{N},~{N}-dimethyl-benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WJ7 'Create component' 2020-10-30 RCSB
WJ7 'Initial release' 2020-11-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
WJ7 C4 C 6.897 -0.375 1
WJ7 C5 C 6.897 -1.875 2
WJ7 C6 C 5.598 -2.625 3
WJ7 C7 C 4.299 -1.875 4
WJ7 C8 C 4.299 -0.375 5
WJ7 N N 6.897 2.625 6
WJ7 C C 6.897 4.125 7
WJ7 O O 4.299 2.625 8
WJ7 C1 C 8.196 1.875 9
WJ7 C2 C 5.598 1.875 10
WJ7 C3 C 5.598 0.375 11
WJ7 F F 5.598 -4.125 12
WJ7 BR Br 3.000 0.375 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
WJ7 C N SINGLE NONE 1
WJ7 C1 N SINGLE NONE 2
WJ7 N C2 SINGLE NONE 3
WJ7 O C2 DOUBLE NONE 4
WJ7 C2 C3 SINGLE NONE 5
WJ7 C3 C4 DOUBLE NONE 6
WJ7 C4 C5 SINGLE NONE 7
WJ7 C5 C6 DOUBLE NONE 8
WJ7 F C6 SINGLE NONE 9
WJ7 C6 C7 SINGLE NONE 10
WJ7 C7 C8 DOUBLE NONE 11
WJ7 C3 C8 SINGLE NONE 12
WJ7 C8 BR SINGLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
WJ7 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
WJ7 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
WJ7 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
WJ7 Z100642432 F3 fragment CN(C)C(=O)c1ccc(F)cc1Br InChI=1S/C9H9BrFNO/c1-12(2)9(13)7-4-3-6(11)5-8(7)10/h3-5H,1-2H3 CGUIJOTZYHWBSQ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
WJ7 C4 S1 1
WJ7 C5 S1 1
WJ7 C6 S1 1
WJ7 C7 S1 1
WJ7 C8 S1 1
WJ7 C3 S1 1
WJ7 N F1 1
WJ7 C2 F1 1
WJ7 O F1 1
WJ7 C3 F1 1
WJ7 C4 F2 1
WJ7 C3 F2 1
WJ7 C8 F2 1
WJ7 C7 F2 1
WJ7 C6 F2 1
WJ7 C5 F2 1
WJ7 C F3 1
WJ7 N F3 1
WJ7 C1 F3 1
WJ7 C2 F3 1
WJ7 O F3 1
WJ7 C3 F3 1
WJ7 C4 F3 1
WJ7 C5 F3 1
WJ7 C6 F3 1
WJ7 F F3 1
WJ7 C7 F3 1
WJ7 C8 F3 1
WJ7 BR F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id WJ7
_pdbe_chem_comp_rdkit_properties.exactmw 244.985
_pdbe_chem_comp_rdkit_properties.amw 246.079
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 22
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 97.125
_pdbe_chem_comp_rdkit_properties.tpsa 20.310
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.235
_pdbe_chem_comp_rdkit_properties.CrippenMR 51.852
_pdbe_chem_comp_rdkit_properties.chi0v 7.697
_pdbe_chem_comp_rdkit_properties.chi1v 3.796
_pdbe_chem_comp_rdkit_properties.chi2v 1.748
_pdbe_chem_comp_rdkit_properties.chi3v 1.748
_pdbe_chem_comp_rdkit_properties.chi4v 1.064
_pdbe_chem_comp_rdkit_properties.chi0n 15.111
_pdbe_chem_comp_rdkit_properties.chi1n 7.503
_pdbe_chem_comp_rdkit_properties.chi2n 1.153
_pdbe_chem_comp_rdkit_properties.chi3n 1.153
_pdbe_chem_comp_rdkit_properties.chi4n 0.622
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.900
_pdbe_chem_comp_rdkit_properties.kappa1 3.349
_pdbe_chem_comp_rdkit_properties.kappa2 3.872
_pdbe_chem_comp_rdkit_properties.kappa3 2.275
_pdbe_chem_comp_rdkit_properties.Phi 0.997
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
WJ7 UniChem ZINC ZINC000019422048
WJ7 UniChem eMolecules 31412724
WJ7 UniChem PubChem 24689405
WJ7 UniChem Mcule MCULE-5952152987
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
WJ7 C4 -1.407 0.071 1.362 ETKDGv3 1
WJ7 C5 -2.812 0.434 1.087 ETKDGv3 2
WJ7 C6 -3.318 0.277 -0.142 ETKDGv3 3
WJ7 C7 -2.476 -0.277 -1.222 ETKDGv3 4
WJ7 C8 -1.199 -0.609 -0.982 ETKDGv3 5
WJ7 N 1.865 -0.048 0.013 ETKDGv3 6
WJ7 C 1.650 1.285 -0.563 ETKDGv3 7
WJ7 O 1.031 -1.644 1.509 ETKDGv3 8
WJ7 C1 3.203 -0.647 0.016 ETKDGv3 9
WJ7 C2 0.782 -0.741 0.664 ETKDGv3 10
WJ7 C3 -0.625 -0.407 0.379 ETKDGv3 11
WJ7 F -4.607 0.612 -0.395 ETKDGv3 12
WJ7 BR -0.173 -1.413 -2.388 ETKDGv3 13
WJ7 H6 -1.013 0.217 2.361 ETKDGv3 14
WJ7 H7 -3.429 0.833 1.882 ETKDGv3 15
WJ7 H8 -2.905 -0.430 -2.203 ETKDGv3 16
WJ7 H2 2.602 1.743 -0.902 ETKDGv3 17
WJ7 H 0.969 1.219 -1.435 ETKDGv3 18
WJ7 H1 1.200 1.954 0.201 ETKDGv3 19
WJ7 H4 3.566 -0.750 1.061 ETKDGv3 20
WJ7 H5 3.931 -0.029 -0.549 ETKDGv3 21
WJ7 H3 3.163 -1.650 -0.458 ETKDGv3 22
#