data_W9C
#
_chem_comp.id W9C
_chem_comp.name
(1S,3S,3aR,4S,4aR,7R,7aR,8aS)-8a-{[(6-deoxy-4-O-methyl-alpha-D-altropyranosyl)oxy]methyl}-4-formyl-7-methyl-3-(propan-2-yl)decahydro-1,4-methano-s-indacene-3a(1H)-carboxylate
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H41 O8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge -1
_chem_comp.pdbx_initial_date 2023-09-27
_chem_comp.pdbx_modified_date 2023-10-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 493.610
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code W9C
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8EVR
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W9C O14 O14 O -1 1 N N N N N N -6.500 -14.337 2.635 3.274 -1.658 -2.140 O14 W9C 1
W9C C5 C5 C 0 1 N N N N N N -7.051 -15.144 1.944 2.401 -0.935 -1.691 C5 W9C 2
W9C O15 O15 O 0 1 N N N N N N -7.956 -15.791 2.385 1.703 -0.280 -2.447 O15 W9C 3
W9C C1 C1 C 0 1 N N R N N N -6.586 -15.383 0.465 2.180 -0.856 -0.204 C1 W9C 4
W9C C4 C4 C 0 1 N N S N N N -5.591 -16.607 0.257 1.865 -2.220 0.488 C4 W9C 5
W9C C12 C12 C 0 1 N N N N N N -4.825 -16.207 -1.024 1.004 -1.861 1.722 C12 W9C 6
W9C C6 C6 C 0 1 N N S N N N -5.650 -15.011 -1.536 1.160 -0.299 1.796 C6 W9C 7
W9C C10 C10 C 0 1 N N N N N N -7.014 -15.585 -1.954 2.691 -0.148 2.049 C10 W9C 8
W9C C3 C3 C 0 1 N N S N N N -7.796 -15.602 -0.617 3.360 -0.259 0.648 C3 W9C 9
W9C C11 C11 C 0 1 N N N N N N -8.622 -16.898 -0.483 4.620 -1.102 0.641 C11 W9C 10
W9C O19 O19 O 0 1 N N N N N N -9.290 -17.355 -1.365 5.654 -0.639 0.223 O19 W9C 11
W9C C9 C9 C 0 1 N N R N N N -8.781 -14.384 -0.452 3.604 1.156 0.148 C9 W9C 12
W9C C18 C18 C 0 1 N N N N N N -10.101 -14.309 -1.208 4.774 1.910 0.807 C18 W9C 13
W9C C24 C24 C 0 1 N N N N N N -10.505 -12.826 -1.069 4.451 3.376 0.394 C24 W9C 14
W9C C22 C22 C 0 1 N N R N N N -9.235 -12.042 -0.642 2.900 3.451 0.315 C22 W9C 15
W9C C25 C25 C 0 1 N N N N N N -9.326 -11.480 0.764 2.464 3.896 -1.078 C25 W9C 16
W9C C16 C16 C 0 1 N N R N N N -8.113 -13.072 -0.895 2.421 2.038 0.632 C16 W9C 17
W9C C7 C7 C 0 1 N N N N N N -6.721 -12.907 -0.292 1.177 1.512 -0.017 C7 W9C 18
W9C C2 C2 C 0 1 N N S N N N -5.835 -14.165 -0.226 0.989 0.029 0.280 C2 W9C 19
W9C C8 C8 C 0 1 N N N N N N -4.517 -13.679 0.420 -0.371 -0.422 -0.270 C8 W9C 20
W9C O17 O17 O 0 1 N N N N N N -3.703 -13.039 -0.574 -1.357 0.567 0.030 O17 W9C 21
W9C C52 C52 C 0 1 N N S N N N -2.540 -12.437 -0.068 -2.667 0.244 -0.442 C52 W9C 22
W9C O56 O56 O 0 1 N N N N N N -1.487 -12.588 -1.011 -3.194 -0.842 0.323 O56 W9C 23
W9C C56 C56 C 0 1 N N R N N N -0.186 -12.118 -0.572 -4.497 -1.265 -0.085 C56 W9C 24
W9C C61 C61 C 0 1 N N N N N N 0.507 -13.286 0.092 -4.457 -1.695 -1.553 C61 W9C 25
W9C C55 C55 C 0 1 N N S N N N -0.329 -10.892 0.349 -5.483 -0.106 0.080 C55 W9C 26
W9C O64 O64 O 0 1 N N N N N N 0.898 -10.160 0.370 -5.561 0.262 1.459 O64 W9C 27
W9C C65 C65 C 0 1 N N N N N N 1.189 -9.257 -0.702 -6.565 -0.442 2.193 C65 W9C 28
W9C C54 C54 C 0 1 N N S N N N -1.585 -10.099 -0.048 -4.996 1.091 -0.742 C54 W9C 29
W9C O60 O60 O 0 1 N N N N N N -1.589 -9.687 -1.422 -5.871 2.201 -0.535 O60 W9C 30
W9C C53 C53 C 0 1 N N S N N N -2.834 -10.960 0.205 -3.580 1.464 -0.290 C53 W9C 31
W9C O57 O57 O 0 1 N N N N N N -3.306 -10.789 1.540 -3.087 2.533 -1.100 O57 W9C 32
W9C C13 C13 C 0 1 N N N N N N -4.721 -16.991 1.485 1.138 -3.180 -0.453 C13 W9C 33
W9C C20 C20 C 0 1 N N N N N N -5.431 -17.986 2.412 1.681 -4.596 -0.255 C20 W9C 34
W9C C21 C21 C 0 1 N N N N N N -3.332 -17.556 1.163 -0.360 -3.160 -0.143 C21 W9C 35
W9C H4 H4 H 0 1 N N N N N N -6.210 -17.482 0.009 2.781 -2.713 0.830 H4 W9C 36
W9C H121 H121 H 0 0 N N N N N N -3.791 -15.909 -0.794 -0.027 -2.162 1.603 H121 W9C 37
W9C H122 H122 H 0 0 N N N N N N -4.816 -17.028 -1.756 1.429 -2.316 2.622 H122 W9C 38
W9C H6 H6 H 0 1 N N N N N N -5.149 -14.450 -2.339 0.502 0.215 2.488 H6 W9C 39
W9C H101 H101 H 0 0 N N N N N N -7.507 -14.938 -2.695 2.940 0.768 2.558 H101 W9C 40
W9C H102 H102 H 0 0 N N N N N N -6.909 -16.600 -2.366 3.031 -0.992 2.672 H102 W9C 41
W9C H11 H11 H 0 1 N N N N N N -8.596 -17.423 0.460 4.593 -2.117 1.011 H11 W9C 42
W9C H9 H9 H 0 1 N N N N N N -9.006 -14.294 0.621 3.720 1.193 -0.946 H9 W9C 43
W9C H181 H181 H 0 0 N N N N N N -9.966 -14.583 -2.265 4.751 1.795 1.886 H181 W9C 44
W9C H182 H182 H 0 0 N N N N N N -10.855 -14.967 -0.751 5.724 1.593 0.385 H182 W9C 45
W9C H241 H241 H 0 0 N N N N N N -10.877 -12.445 -2.031 4.820 4.068 1.149 H241 W9C 46
W9C H242 H242 H 0 0 N N N N N N -11.289 -12.719 -0.305 4.887 3.599 -0.577 H242 W9C 47
W9C H22 H22 H 0 1 N N N N N N -9.098 -11.206 -1.344 2.524 4.146 1.069 H22 W9C 48
W9C H251 H251 H 0 0 N N N N N N -8.399 -10.939 1.004 2.847 3.195 -1.820 H251 W9C 49
W9C H252 H252 H 0 0 N N N N N N -10.180 -10.790 0.828 1.376 3.920 -1.128 H252 W9C 50
W9C H253 H253 H 0 0 N N N N N N -9.465 -12.304 1.480 2.859 4.892 -1.282 H253 W9C 51
W9C H16 H16 H 0 1 N N N N N N -7.983 -13.135 -1.985 2.305 1.984 1.717 H16 W9C 52
W9C H71 H71 H 0 1 N N N N N N -6.186 -12.155 -0.892 0.309 2.058 0.363 H71 W9C 53
W9C H72 H72 H 0 1 N N N N N N -6.846 -12.535 0.736 1.222 1.639 -1.099 H72 W9C 54
W9C H81 H81 H 0 1 N N N N N N -4.745 -12.963 1.223 -0.301 -0.549 -1.351 H81 W9C 55
W9C H82 H82 H 0 1 N N N N N N -3.975 -14.540 0.839 -0.654 -1.368 0.190 H82 W9C 56
W9C H52 H52 H 0 1 N N N N N N -2.256 -12.912 0.883 -2.615 -0.043 -1.492 H52 W9C 57
W9C H56 H56 H 0 1 N N N N N N 0.405 -11.817 -1.450 -4.816 -2.105 0.531 H56 W9C 58
W9C H611 H611 H 0 0 N N N N N N 1.502 -12.972 0.442 -3.754 -2.520 -1.671 H611 W9C 59
W9C H612 H612 H 0 0 N N N N N N -0.092 -13.628 0.949 -5.451 -2.018 -1.864 H612 W9C 60
W9C H613 H613 H 0 0 N N N N N N 0.615 -14.108 -0.631 -4.138 -0.855 -2.170 H613 W9C 61
W9C H55 H55 H 0 1 N N N N N N -0.509 -11.280 1.362 -6.468 -0.413 -0.271 H55 W9C 62
W9C H651 H651 H 0 0 N N N N N N 2.165 -8.782 -0.527 -6.560 -0.106 3.230 H651 W9C 63
W9C H652 H652 H 0 0 N N N N N N 1.216 -9.812 -1.651 -7.543 -0.244 1.752 H652 W9C 64
W9C H653 H653 H 0 0 N N N N N N 0.409 -8.483 -0.752 -6.360 -1.512 2.156 H653 W9C 65
W9C H54 H54 H 0 1 N N N N N N -1.646 -9.212 0.599 -4.985 0.827 -1.799 H54 W9C 66
W9C H60 H60 H 0 1 N N N N N N -2.386 -9.204 -1.606 -5.621 2.996 -1.027 H60 W9C 67
W9C H53 H53 H 0 1 N N N N N N -3.614 -10.635 -0.499 -3.601 1.776 0.754 H53 W9C 68
W9C H57 H57 H 0 1 N N N N N N -3.485 -9.869 1.698 -2.191 2.817 -0.873 H57 W9C 69
W9C H13 H13 H 0 1 N N N N N N -4.566 -16.069 2.064 1.300 -2.869 -1.485 H13 W9C 70
W9C H201 H201 H 0 0 N N N N N N -4.777 -18.226 3.263 1.213 -5.268 -0.975 H201 W9C 71
W9C H202 H202 H 0 0 N N N N N N -6.366 -17.539 2.782 2.760 -4.596 -0.407 H202 W9C 72
W9C H203 H203 H 0 0 N N N N N N -5.660 -18.906 1.855 1.456 -4.934 0.757 H203 W9C 73
W9C H211 H211 H 0 0 N N N N N N -2.806 -17.792 2.100 -0.830 -2.330 -0.672 H211 W9C 74
W9C H212 H212 H 0 0 N N N N N N -3.439 -18.471 0.562 -0.811 -4.098 -0.466 H212 W9C 75
W9C H213 H213 H 0 0 N N N N N N -2.755 -16.810 0.597 -0.508 -3.036 0.930 H213 W9C 76
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W9C O14 C5 SING N N 1
W9C C5 O15 DOUB N N 2
W9C C5 C1 SING N N 3
W9C C1 C4 SING N N 4
W9C C1 C3 SING N N 5
W9C C1 C2 SING N N 6
W9C C4 C12 SING N N 7
W9C C4 C13 SING N N 8
W9C C4 H4 SING N N 9
W9C C12 C6 SING N N 10
W9C C12 H121 SING N N 11
W9C C12 H122 SING N N 12
W9C C6 C10 SING N N 13
W9C C6 C2 SING N N 14
W9C C6 H6 SING N N 15
W9C C10 C3 SING N N 16
W9C C10 H101 SING N N 17
W9C C10 H102 SING N N 18
W9C C3 C11 SING N N 19
W9C C3 C9 SING N N 20
W9C C11 O19 DOUB N N 21
W9C C11 H11 SING N N 22
W9C C9 C18 SING N N 23
W9C C9 C16 SING N N 24
W9C C9 H9 SING N N 25
W9C C18 C24 SING N N 26
W9C C18 H181 SING N N 27
W9C C18 H182 SING N N 28
W9C C24 C22 SING N N 29
W9C C24 H241 SING N N 30
W9C C24 H242 SING N N 31
W9C C22 C25 SING N N 32
W9C C22 C16 SING N N 33
W9C C22 H22 SING N N 34
W9C C25 H251 SING N N 35
W9C C25 H252 SING N N 36
W9C C25 H253 SING N N 37
W9C C16 C7 SING N N 38
W9C C16 H16 SING N N 39
W9C C7 C2 SING N N 40
W9C C7 H71 SING N N 41
W9C C7 H72 SING N N 42
W9C C2 C8 SING N N 43
W9C C8 O17 SING N N 44
W9C C8 H81 SING N N 45
W9C C8 H82 SING N N 46
W9C O17 C52 SING N N 47
W9C C52 O56 SING N N 48
W9C C52 C53 SING N N 49
W9C C52 H52 SING N N 50
W9C O56 C56 SING N N 51
W9C C56 C61 SING N N 52
W9C C56 C55 SING N N 53
W9C C56 H56 SING N N 54
W9C C61 H611 SING N N 55
W9C C61 H612 SING N N 56
W9C C61 H613 SING N N 57
W9C C55 O64 SING N N 58
W9C C55 C54 SING N N 59
W9C C55 H55 SING N N 60
W9C O64 C65 SING N N 61
W9C C65 H651 SING N N 62
W9C C65 H652 SING N N 63
W9C C65 H653 SING N N 64
W9C C54 O60 SING N N 65
W9C C54 C53 SING N N 66
W9C C54 H54 SING N N 67
W9C O60 H60 SING N N 68
W9C C53 O57 SING N N 69
W9C C53 H53 SING N N 70
W9C O57 H57 SING N N 71
W9C C13 C20 SING N N 72
W9C C13 C21 SING N N 73
W9C C13 H13 SING N N 74
W9C C20 H201 SING N N 75
W9C C20 H202 SING N N 76
W9C C20 H203 SING N N 77
W9C C21 H211 SING N N 78
W9C C21 H212 SING N N 79
W9C C21 H213 SING N N 80
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W9C SMILES ACDLabs 12.01 CC(C)C1CC2CC3(C=O)C4CCC(C)C4CC2(COC2OC(C)C(OC)C(O)C2O)C13C([O-])=O
W9C InChI InChI 1.06 InChI=1S/C27H42O8/c1-13(2)19-8-16-9-25(11-28)18-7-6-14(3)17(18)10-26(16,27(19,25)24(31)32)12-34-23-21(30)20(29)22(33-5)15(4)35-23/h11,13-23,29-30H,6-10,12H2,1-5H3,(H,31,32)/p-1/t14-,15-,16+,17-,18-,19+,20+,21+,22-,23+,25+,26+,27+/m1/s1
W9C InChIKey InChI 1.06 DIBGPTPYRVEPSP-LFCZXAENSA-M
W9C SMILES_CANONICAL CACTVS 3.385 CO[C@@H]1[C@@H](C)O[C@H](OC[C@@]23C[C@@H]4[C@H](C)CC[C@H]4[C@]5(C[C@@H]2C[C@@H](C(C)C)[C@@]35C([O-])=O)C=O)[C@@H](O)[C@@H]1O
W9C SMILES CACTVS 3.385 CO[CH]1[CH](C)O[CH](OC[C]23C[CH]4[CH](C)CC[CH]4[C]5(C[CH]2C[CH](C(C)C)[C]35C([O-])=O)C=O)[CH](O)[CH]1O
W9C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C[C@@H]1CC[C@@H]2[C@@H]1C[C@@]3([C@H]4C[C@H]([C@@]3([C@@]2(C4)C=O)C(=O)[O-])C(C)C)CO[C@@H]5[C@H]([C@@H]([C@@H]([C@H](O5)C)OC)O)O
W9C SMILES "OpenEye OEToolkits" 2.0.7 CC1CCC2C1CC3(C4CC(C3(C2(C4)C=O)C(=O)[O-])C(C)C)COC5C(C(C(C(O5)C)OC)O)O
#
_pdbx_chem_comp_identifier.comp_id W9C
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 12.01
_pdbx_chem_comp_identifier.identifier
(1S,3S,3aR,4S,4aR,7R,7aR,8aS)-8a-{[(6-deoxy-4-O-methyl-alpha-D-altropyranosyl)oxy]methyl}-4-formyl-7-methyl-3-(propan-2-yl)decahydro-1,4-methano-s-indacene-3a(1H)-carboxylate
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W9C 'Create component' 2023-09-27 RCSB
W9C 'Initial release' 2023-11-01 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
W9C O14 O 4.485 -4.084 1
W9C C5 C 5.728 -3.245 2
W9C O15 O 7.077 -3.902 3
W9C C1 C 5.572 -1.018 4
W9C C4 C 3.513 -1.905 5
W9C C12 C 3.000 -0.496 6
W9C C6 C 5.960 0.431 7
W9C C10 C 8.059 -0.332 8
W9C C3 C 7.670 -1.781 9
W9C C11 C 8.296 -2.706 10
W9C O19 O 9.792 -2.600 11
W9C C9 C 8.159 -0.776 12
W9C C18 C 9.622 -1.105 13
W9C C24 C 10.388 0.185 14
W9C C22 C 9.397 1.311 15
W9C C25 C 10.070 2.652 16
W9C C16 C 8.020 0.717 17
W9C C7 C 6.657 1.343 18
W9C C2 C 4.855 1.905 19
W9C C8 C 6.651 2.315 20
W9C O17 O 7.094 3.749 21
W9C C52 C 8.556 4.082 22
W9C O56 O 9.576 2.983 23
W9C C56 C 11.039 3.316 24
W9C C61 C 12.059 2.217 25
W9C C55 C 11.481 4.750 26
W9C O64 O 12.943 5.083 27
W9C C65 C 13.386 6.517 28
W9C C54 C 10.461 5.849 29
W9C O60 O 10.903 7.283 30
W9C C53 C 8.998 5.516 31
W9C O57 O 7.978 6.615 32
W9C C13 C 3.021 -4.093 33
W9C C20 C 1.589 -4.540 34
W9C C21 C 4.124 -5.110 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
W9C O14 C5 SINGLE NONE 1
W9C C5 O15 DOUBLE NONE 2
W9C C1 C5 SINGLE BEGINDASH 3
W9C C1 C4 SINGLE NONE 4
W9C C1 C3 SINGLE NONE 5
W9C C1 C2 SINGLE NONE 6
W9C C4 C12 SINGLE NONE 7
W9C C4 C13 SINGLE BEGINDASH 8
W9C C12 C6 SINGLE NONE 9
W9C C6 C10 SINGLE NONE 10
W9C C6 C2 SINGLE NONE 11
W9C C10 C3 SINGLE NONE 12
W9C C3 C11 SINGLE BEGINWEDGE 13
W9C C3 C9 SINGLE NONE 14
W9C C11 O19 DOUBLE NONE 15
W9C C9 C18 SINGLE NONE 16
W9C C9 C16 SINGLE NONE 17
W9C C18 C24 SINGLE NONE 18
W9C C24 C22 SINGLE NONE 19
W9C C22 C25 SINGLE BEGINDASH 20
W9C C22 C16 SINGLE NONE 21
W9C C16 C7 SINGLE NONE 22
W9C C7 C2 SINGLE NONE 23
W9C C2 C8 SINGLE BEGINWEDGE 24
W9C C8 O17 SINGLE NONE 25
W9C C52 O17 SINGLE BEGINDASH 26
W9C C52 O56 SINGLE NONE 27
W9C C52 C53 SINGLE NONE 28
W9C O56 C56 SINGLE NONE 29
W9C C56 C61 SINGLE BEGINWEDGE 30
W9C C56 C55 SINGLE NONE 31
W9C C55 O64 SINGLE BEGINDASH 32
W9C C55 C54 SINGLE NONE 33
W9C O64 C65 SINGLE NONE 34
W9C C54 O60 SINGLE BEGINDASH 35
W9C C54 C53 SINGLE NONE 36
W9C C53 O57 SINGLE BEGINWEDGE 37
W9C C13 C20 SINGLE NONE 38
W9C C13 C21 SINGLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
W9C MurckoScaffold S1 scaffold 'C1CC[C@@H](OC[C@@]23C[C@@H]4CCC[C@H]4C4C[C@@H]2CCC43)OC1' InChI=1S/C19H30O2/c1-2-9-20-18(6-1)21-12-19-11-13-4-3-5-15(13)16-10-14(19)7-8-17(16)19/h13-18H,1-12H2/t13-,14-,15+,16+,17+,18+,19-/m0/s1 JIUONPRZSHTHAC-KZGZMPLZSA-N
W9C cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
W9C cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
W9C pyranose F3 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
W9C C1 S1 1
W9C C4 S1 1
W9C C12 S1 1
W9C C6 S1 1
W9C C10 S1 1
W9C C3 S1 1
W9C C9 S1 1
W9C C18 S1 1
W9C C24 S1 1
W9C C22 S1 1
W9C C16 S1 1
W9C C7 S1 1
W9C C2 S1 1
W9C C8 S1 1
W9C O17 S1 1
W9C C52 S1 1
W9C O56 S1 1
W9C C56 S1 1
W9C C55 S1 1
W9C C54 S1 1
W9C C53 S1 1
W9C C1 F1 1
W9C C4 F1 1
W9C C12 F1 1
W9C C6 F1 1
W9C C10 F1 1
W9C C3 F1 1
W9C C1 F1 2
W9C C3 F1 2
W9C C9 F1 2
W9C C16 F1 2
W9C C7 F1 2
W9C C2 F1 2
W9C C1 F2 1
W9C C4 F2 1
W9C C12 F2 1
W9C C6 F2 1
W9C C2 F2 1
W9C C1 F2 2
W9C C3 F2 2
W9C C10 F2 2
W9C C6 F2 2
W9C C2 F2 2
W9C C9 F2 3
W9C C18 F2 3
W9C C24 F2 3
W9C C22 F2 3
W9C C16 F2 3
W9C C55 F3 1
W9C C56 F3 1
W9C O56 F3 1
W9C C52 F3 1
W9C C53 F3 1
W9C C54 F3 1
W9C O17 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id W9C
_pdbe_chem_comp_rdkit_properties.exactmw 493.281
_pdbe_chem_comp_rdkit_properties.amw 493.617
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 76
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.926
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 5
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 5
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 4
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 13
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 265.022
_pdbe_chem_comp_rdkit_properties.tpsa 125.350
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.154
_pdbe_chem_comp_rdkit_properties.CrippenMR 122.515
_pdbe_chem_comp_rdkit_properties.chi0v 16.766
_pdbe_chem_comp_rdkit_properties.chi1v 9.245
_pdbe_chem_comp_rdkit_properties.chi2v 6.045
_pdbe_chem_comp_rdkit_properties.chi3v 6.045
_pdbe_chem_comp_rdkit_properties.chi4v 4.669
_pdbe_chem_comp_rdkit_properties.chi0n 57.766
_pdbe_chem_comp_rdkit_properties.chi1n 29.562
_pdbe_chem_comp_rdkit_properties.chi2n 6.045
_pdbe_chem_comp_rdkit_properties.chi3n 6.045
_pdbe_chem_comp_rdkit_properties.chi4n 4.669
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.060
_pdbe_chem_comp_rdkit_properties.kappa1 5.910
_pdbe_chem_comp_rdkit_properties.kappa2 8.483
_pdbe_chem_comp_rdkit_properties.kappa3 2.976
_pdbe_chem_comp_rdkit_properties.Phi 1.432
#
_pdbe_chem_comp_external_mappings.comp_id W9C
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 168719768
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
W9C O14 -0.360 0.207 2.399 ETKDGv3 1
W9C C5 -1.476 -0.382 1.819 ETKDGv3 2
W9C O15 -2.309 -0.963 2.563 ETKDGv3 3
W9C C1 -1.654 -0.378 0.308 ETKDGv3 4
W9C C4 -0.869 -1.536 -0.463 ETKDGv3 5
W9C C12 -0.588 -0.872 -1.841 ETKDGv3 6
W9C C6 -1.495 0.376 -1.793 ETKDGv3 7
W9C C10 -2.953 -0.194 -1.734 ETKDGv3 8
W9C C3 -3.169 -0.431 -0.206 ETKDGv3 9
W9C C11 -3.858 -1.757 0.078 ETKDGv3 10
W9C O19 -4.899 -2.052 -0.487 ETKDGv3 11
W9C C9 -3.994 0.734 0.431 ETKDGv3 12
W9C C18 -5.504 0.804 0.252 ETKDGv3 13
W9C C24 -5.852 2.267 0.599 ETKDGv3 14
W9C C22 -4.528 3.073 0.547 ETKDGv3 15
W9C C25 -4.108 3.576 1.939 ETKDGv3 16
W9C C16 -3.549 2.080 -0.092 ETKDGv3 17
W9C C7 -2.044 2.221 0.069 ETKDGv3 18
W9C C2 -1.195 0.951 -0.378 ETKDGv3 19
W9C C8 0.293 1.466 -0.214 ETKDGv3 20
W9C O17 1.287 0.473 -0.106 ETKDGv3 21
W9C C52 2.583 1.057 -0.023 ETKDGv3 22
W9C O56 3.235 0.592 1.156 ETKDGv3 23
W9C C56 3.913 -0.630 0.940 ETKDGv3 24
W9C C61 4.314 -1.222 2.290 ETKDGv3 25
W9C C55 5.151 -0.416 0.030 ETKDGv3 26
W9C O64 5.432 -1.642 -0.631 ETKDGv3 27
W9C C65 6.784 -2.006 -0.465 ETKDGv3 28
W9C C54 4.877 0.699 -1.013 ETKDGv3 29
W9C O60 5.615 0.458 -2.185 ETKDGv3 30
W9C C53 3.374 0.779 -1.331 ETKDGv3 31
W9C O57 3.121 1.807 -2.256 ETKDGv3 32
W9C C13 0.314 -2.275 0.255 ETKDGv3 33
W9C C20 1.269 -2.950 -0.749 ETKDGv3 34
W9C C21 -0.212 -3.371 1.203 ETKDGv3 35
W9C H4 -1.568 -2.364 -0.708 ETKDGv3 36
W9C H121 0.462 -0.576 -2.012 ETKDGv3 37
W9C H122 -0.854 -1.548 -2.684 ETKDGv3 38
W9C H6 -1.322 1.084 -2.632 ETKDGv3 39
W9C H101 -3.702 0.449 -2.231 ETKDGv3 40
W9C H102 -3.042 -1.149 -2.302 ETKDGv3 41
W9C H11 -3.424 -2.466 0.775 ETKDGv3 42
W9C H9 -3.831 0.703 1.530 ETKDGv3 43
W9C H181 -6.027 0.096 0.931 ETKDGv3 44
W9C H182 -5.782 0.585 -0.803 ETKDGv3 45
W9C H241 -6.326 2.316 1.604 ETKDGv3 46
W9C H242 -6.576 2.667 -0.144 ETKDGv3 47
W9C H22 -4.653 3.962 -0.113 ETKDGv3 48
W9C H251 -4.910 4.216 2.363 ETKDGv3 49
W9C H252 -3.191 4.197 1.860 ETKDGv3 50
W9C H253 -3.921 2.735 2.638 ETKDGv3 51
W9C H16 -3.749 2.202 -1.175 ETKDGv3 52
W9C H71 -1.828 2.418 1.141 ETKDGv3 53
W9C H72 -1.721 3.118 -0.506 ETKDGv3 54
W9C H81 0.511 2.121 -1.090 ETKDGv3 55
W9C H82 0.362 2.105 0.698 ETKDGv3 56
W9C H52 2.557 2.169 0.093 ETKDGv3 57
W9C H56 3.229 -1.365 0.464 ETKDGv3 58
W9C H611 4.839 -2.190 2.146 ETKDGv3 59
W9C H612 4.980 -0.523 2.840 ETKDGv3 60
W9C H613 3.406 -1.403 2.903 ETKDGv3 61
W9C H55 5.994 -0.051 0.671 ETKDGv3 62
W9C H651 7.012 -2.203 0.605 ETKDGv3 63
W9C H652 7.463 -1.222 -0.870 ETKDGv3 64
W9C H653 6.972 -2.941 -1.030 ETKDGv3 65
W9C H54 5.191 1.674 -0.565 ETKDGv3 66
W9C H60 5.758 1.337 -2.625 ETKDGv3 67
W9C H53 3.047 -0.200 -1.755 ETKDGv3 68
W9C H57 3.265 1.426 -3.161 ETKDGv3 69
W9C H13 0.896 -1.581 0.885 ETKDGv3 70
W9C H201 1.826 -2.201 -1.343 ETKDGv3 71
W9C H202 0.704 -3.610 -1.441 ETKDGv3 72
W9C H203 2.027 -3.562 -0.215 ETKDGv3 73
W9C H211 -0.904 -2.961 1.961 ETKDGv3 74
W9C H212 0.632 -3.842 1.750 ETKDGv3 75
W9C H213 -0.748 -4.162 0.635 ETKDGv3 76
#