data_W8G
#
_chem_comp.id W8G
_chem_comp.name 4-thiomorpholino-7H-pyrrolo[2,3-d]pyrimidin-2-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H13 N5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-01-15
_chem_comp.pdbx_modified_date 2015-01-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 235.309
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code W8G
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4CLH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W8G N1 N1 N 0 1 Y N N N N N -1.267 17.989 28.115 -0.840 -1.534 0.002 N1 W8G 1
W8G C2 C2 C 0 1 Y N N N N N -1.180 16.654 27.788 -2.142 -1.760 -0.130 C2 W8G 2
W8G N3 N3 N 0 1 Y N N N N N -0.127 16.152 27.109 -3.035 -0.785 -0.132 N3 W8G 3
W8G C4 C4 C 0 1 Y N N N N N 0.840 17.041 26.733 -2.655 0.485 0.001 C4 W8G 4
W8G C5 C5 C 0 1 Y N N N N N 0.761 18.415 27.049 -1.284 0.767 0.144 C5 W8G 5
W8G C6 C6 C 0 1 Y N N N N N -0.306 18.879 27.754 -0.371 -0.299 0.140 C6 W8G 6
W8G NAA NAA N 0 1 N N N N N N -2.151 15.843 28.167 -2.581 -3.066 -0.271 NAA W8G 7
W8G CAB CAB C 0 1 Y N N N N N 2.608 18.106 25.977 -2.425 2.710 0.196 CAB W8G 8
W8G CAC CAC C 0 1 Y N N N N N 1.841 19.024 26.587 -1.177 2.220 0.267 CAC W8G 9
W8G CAD CAD C 0 1 N N N N N N -1.174 20.360 30.321 3.138 -1.109 0.827 CAD W8G 10
W8G CAE CAE C 0 1 N N N N N N 1.290 21.504 29.458 2.815 1.465 -0.292 CAE W8G 11
W8G CAF CAF C 0 1 N N N N N N -1.519 20.701 28.893 1.737 -1.325 0.244 CAF W8G 12
W8G CAG CAG C 0 1 N N N N N N 0.742 21.199 28.016 1.458 0.895 -0.720 CAG W8G 13
W8G NAJ NAJ N 0 1 Y N N N N N 1.995 16.904 26.067 -3.319 1.680 0.037 NAJ W8G 14
W8G SAK SAK S 0 1 N N N N N N 0.134 21.521 30.927 4.015 0.101 -0.211 SAK W8G 15
W8G NAP NAP N 0 1 N N N N N N -0.385 20.241 28.102 0.986 -0.068 0.277 NAP W8G 16
W8G HNAA HNAA H 0 0 N N N N N N -2.844 16.363 28.666 -1.941 -3.795 -0.272 HNAA W8G 17
W8G HNAB HNAB H 0 0 N N N N N N -2.567 15.422 27.361 -3.528 -3.251 -0.368 HNAB W8G 18
W8G HAB HAB H 0 1 N N N N N N 3.556 18.296 25.495 -2.686 3.756 0.255 HAB W8G 19
W8G HAC HAC H 0 1 N N N N N N 2.066 20.076 26.684 -0.268 2.791 0.391 HAC W8G 20
W8G HAD HAD H 0 1 N N N N N N -2.072 20.457 30.949 3.057 -0.728 1.844 HAD W8G 21
W8G HADA HADA H 0 0 N N N N N N -0.801 19.327 30.372 3.684 -2.053 0.828 HADA W8G 22
W8G HAE HAE H 0 1 N N N N N N 2.058 20.746 29.670 3.148 2.204 -1.021 HAE W8G 23
W8G HAEA HAEA H 0 0 N N N N N N 1.758 22.498 29.414 2.723 1.931 0.689 HAEA W8G 24
W8G HAF HAF H 0 1 N N N N N N -2.439 20.183 28.585 1.823 -1.669 -0.787 HAF W8G 25
W8G HAFA HAFA H 0 0 N N N N N N -1.654 21.787 28.778 1.212 -2.077 0.833 HAFA W8G 26
W8G HAG HAG H 0 1 N N N N N N 0.393 22.133 27.552 0.736 1.706 -0.810 HAG W8G 27
W8G HAGA HAGA H 0 0 N N N N N N 1.546 20.764 27.404 1.563 0.396 -1.684 HAGA W8G 28
W8G HNAJ HNAJ H 0 0 N N N N N N 2.349 16.046 25.694 -4.280 1.785 -0.039 HNAJ W8G 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W8G N1 C2 DOUB Y N 1
W8G N1 C6 SING Y N 2
W8G C2 N3 SING Y N 3
W8G C2 NAA SING N N 4
W8G N3 C4 DOUB Y N 5
W8G C4 C5 SING Y N 6
W8G C4 NAJ SING Y N 7
W8G C5 C6 DOUB Y N 8
W8G C5 CAC SING Y N 9
W8G C6 NAP SING N N 10
W8G CAB CAC DOUB Y N 11
W8G CAB NAJ SING Y N 12
W8G CAD CAF SING N N 13
W8G CAD SAK SING N N 14
W8G CAE CAG SING N N 15
W8G CAE SAK SING N N 16
W8G CAF NAP SING N N 17
W8G CAG NAP SING N N 18
W8G NAA HNAA SING N N 19
W8G NAA HNAB SING N N 20
W8G CAB HAB SING N N 21
W8G CAC HAC SING N N 22
W8G CAD HAD SING N N 23
W8G CAD HADA SING N N 24
W8G CAE HAE SING N N 25
W8G CAE HAEA SING N N 26
W8G CAF HAF SING N N 27
W8G CAF HAFA SING N N 28
W8G CAG HAG SING N N 29
W8G CAG HAGA SING N N 30
W8G NAJ HNAJ SING N N 31
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W8G SMILES ACDLabs 12.01 n1c(nc3c(c1N2CCSCC2)ccn3)N
W8G InChI InChI 1.03 InChI=1S/C10H13N5S/c11-10-13-8-7(1-2-12-8)9(14-10)15-3-5-16-6-4-15/h1-2H,3-6H2,(H3,11,12,13,14)
W8G InChIKey InChI 1.03 GXASLOKGYHGRQW-UHFFFAOYSA-N
W8G SMILES_CANONICAL CACTVS 3.385 Nc1nc2[nH]ccc2c(n1)N3CCSCC3
W8G SMILES CACTVS 3.385 Nc1nc2[nH]ccc2c(n1)N3CCSCC3
W8G SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1c[nH]c2c1c(nc(n2)N)N3CCSCC3
W8G SMILES "OpenEye OEToolkits" 1.7.6 c1c[nH]c2c1c(nc(n2)N)N3CCSCC3
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
W8G "SYSTEMATIC NAME" ACDLabs 12.01 4-(thiomorpholin-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-2-amine
W8G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 4-thiomorpholin-4-yl-7H-pyrrolo[2,3-d]pyrimidin-2-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W8G 'Create component' 2014-01-15 EBI
W8G 'Modify name' 2014-01-22 EBI
W8G 'Initial release' 2015-01-21 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
W8G N1 N 5.104 -1.035 1
W8G C2 C 5.104 -2.535 2
W8G N3 N 6.404 -3.285 3
W8G C4 C 7.702 -2.535 4
W8G C5 C 7.702 -1.035 5
W8G C6 C 6.404 -0.285 6
W8G NAA N 3.805 -3.285 7
W8G CAB C 9.997 -1.785 8
W8G CAC C 9.122 -0.578 9
W8G CAD C 5.104 3.465 10
W8G CAE C 7.702 3.465 11
W8G CAF C 5.104 1.965 12
W8G CAG C 7.702 1.965 13
W8G NAJ N 9.122 -2.992 14
W8G SAK S 6.404 4.215 15
W8G NAP N 6.404 1.215 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
W8G N1 C2 DOUBLE NONE 1
W8G N1 C6 SINGLE NONE 2
W8G C2 N3 SINGLE NONE 3
W8G C2 NAA SINGLE NONE 4
W8G N3 C4 DOUBLE NONE 5
W8G C4 C5 SINGLE NONE 6
W8G C4 NAJ SINGLE NONE 7
W8G C5 C6 DOUBLE NONE 8
W8G C5 CAC SINGLE NONE 9
W8G C6 NAP SINGLE NONE 10
W8G CAB CAC DOUBLE NONE 11
W8G CAB NAJ SINGLE NONE 12
W8G CAD CAF SINGLE NONE 13
W8G CAD SAK SINGLE NONE 14
W8G CAE CAG SINGLE NONE 15
W8G CAE SAK SINGLE NONE 16
W8G CAF NAP SINGLE NONE 17
W8G CAG NAP SINGLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
W8G MurckoScaffold S1 scaffold 'c1nc(N2CCSCC2)c2cc[nH]c2n1' InChI=1S/C10H12N4S/c1-2-11-9-8(1)10(13-7-12-9)14-3-5-15-6-4-14/h1-2,7H,3-6H2,(H,11,12,13) GYDDXDLALYCLDX-UHFFFAOYSA-N
W8G pyrimidine F1 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
W8G pyrrole F2 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
W8G N1 S1 1
W8G C2 S1 1
W8G N3 S1 1
W8G C4 S1 1
W8G C5 S1 1
W8G C6 S1 1
W8G CAB S1 1
W8G CAC S1 1
W8G CAD S1 1
W8G CAE S1 1
W8G CAF S1 1
W8G CAG S1 1
W8G NAJ S1 1
W8G SAK S1 1
W8G NAP S1 1
W8G C5 F1 1
W8G C4 F1 1
W8G N3 F1 1
W8G C2 F1 1
W8G N1 F1 1
W8G C6 F1 1
W8G C4 F2 1
W8G C5 F2 1
W8G CAC F2 1
W8G CAB F2 1
W8G NAJ F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id W8G
_pdbe_chem_comp_rdkit_properties.exactmw 235.089
_pdbe_chem_comp_rdkit_properties.amw 235.316
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.400
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 115.877
_pdbe_chem_comp_rdkit_properties.tpsa 70.830
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.096
_pdbe_chem_comp_rdkit_properties.CrippenMR 63.985
_pdbe_chem_comp_rdkit_properties.chi0v 8.461
_pdbe_chem_comp_rdkit_properties.chi1v 4.961
_pdbe_chem_comp_rdkit_properties.chi2v 2.217
_pdbe_chem_comp_rdkit_properties.chi3v 2.217
_pdbe_chem_comp_rdkit_properties.chi4v 1.539
_pdbe_chem_comp_rdkit_properties.chi0n 20.644
_pdbe_chem_comp_rdkit_properties.chi1n 10.486
_pdbe_chem_comp_rdkit_properties.chi2n 1.830
_pdbe_chem_comp_rdkit_properties.chi3n 1.830
_pdbe_chem_comp_rdkit_properties.chi4n 1.214
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.430
_pdbe_chem_comp_rdkit_properties.kappa1 3.068
_pdbe_chem_comp_rdkit_properties.kappa2 3.860
_pdbe_chem_comp_rdkit_properties.kappa3 1.586
_pdbe_chem_comp_rdkit_properties.Phi 0.740
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
W8G UniChem ZINC ZINC000222800067
W8G UniChem PubChem 86580348
W8G UniChem BRENDA 220685
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
W8G N1 -0.589 0.464 1.590 ETKDGv3 1
W8G C2 -1.793 0.745 2.028 ETKDGv3 2
W8G N3 -2.924 0.695 1.129 ETKDGv3 3
W8G C4 -2.703 0.385 -0.110 ETKDGv3 4
W8G C5 -1.399 0.070 -0.609 ETKDGv3 5
W8G C6 -0.339 0.104 0.210 ETKDGv3 6
W8G NAA -1.989 1.093 3.396 ETKDGv3 7
W8G CAB -2.918 -0.205 -2.264 ETKDGv3 8
W8G CAC -1.607 -0.311 -2.005 ETKDGv3 9
W8G CAD 3.007 0.669 -1.407 ETKDGv3 10
W8G CAE 2.860 0.281 1.322 ETKDGv3 11
W8G CAF 1.517 0.321 -1.497 ETKDGv3 12
W8G CAG 1.941 -0.797 0.734 ETKDGv3 13
W8G NAJ -3.673 0.230 -1.126 ETKDGv3 14
W8G SAK 3.354 1.592 0.130 ETKDGv3 15
W8G NAP 1.000 -0.208 -0.224 ETKDGv3 16
W8G HNAA -2.946 1.315 3.750 ETKDGv3 17
W8G HNAB -1.181 1.130 4.056 ETKDGv3 18
W8G HAB -3.367 -0.440 -3.220 ETKDGv3 19
W8G HAC -0.867 -0.651 -2.714 ETKDGv3 20
W8G HAD 3.627 -0.252 -1.438 ETKDGv3 21
W8G HADA 3.292 1.298 -2.276 ETKDGv3 22
W8G HAE 3.775 -0.200 1.726 ETKDGv3 23
W8G HAEA 2.338 0.777 2.168 ETKDGv3 24
W8G HAF 1.376 -0.433 -2.298 ETKDGv3 25
W8G HAFA 0.963 1.246 -1.774 ETKDGv3 26
W8G HAG 1.400 -1.319 1.554 ETKDGv3 27
W8G HAGA 2.551 -1.572 0.221 ETKDGv3 28
W8G HNAJ -4.707 0.353 -1.052 ETKDGv3 29
#