data_VXL
#
_chem_comp.id VXL
_chem_comp.name
"(3R,3aS,4R,6aR)-4-[2-(methylamino)-2-oxoethoxy]hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H43 N3 O10 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-02-05
_chem_comp.pdbx_modified_date 2015-05-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 649.752
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VXL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5AHC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VXL CAA CAA C 0 1 N N N N N N 4.389 22.273 4.460 -6.794 5.764 0.756 CAA VXL 1
VXL CAB CAB C 0 1 N N N N N N 18.939 16.511 3.147 10.178 0.955 -1.469 CAB VXL 2
VXL CAC CAC C 0 1 N N N N N N 15.509 23.652 7.196 5.892 -2.243 0.716 CAC VXL 3
VXL CAD CAD C 0 1 N N N N N N 13.840 22.529 8.685 4.773 -4.063 2.010 CAD VXL 4
VXL OAE OAE O 0 1 N N N N N N 4.265 24.198 2.554 -7.380 3.270 -0.082 OAE VXL 5
VXL OAF OAF O 0 1 N N N N N N 10.363 23.732 6.534 -2.038 -1.897 -1.353 OAF VXL 6
VXL OAG OAG O 0 1 N N N N N N 13.190 19.606 5.603 4.821 0.797 2.956 OAG VXL 7
VXL OAH OAH O 0 1 N N N N N N 12.779 20.696 3.386 3.374 1.916 1.252 OAH VXL 8
VXL OAI OAI O 0 1 N N N N N N 14.087 25.240 3.923 1.020 0.854 1.341 OAI VXL 9
VXL CAL CAL C 0 1 Y N N N N N 7.794 23.076 2.500 -2.382 -0.404 -4.601 CAL VXL 10
VXL CAM CAM C 0 1 Y N N N N N 8.605 22.070 3.012 -2.813 0.359 -3.532 CAM VXL 11
VXL CAN CAN C 0 1 Y N N N N N 8.353 24.273 2.057 -1.094 -0.907 -4.615 CAN VXL 12
VXL CAO CAO C 0 1 Y N N N N N 9.970 22.295 3.152 -1.956 0.622 -2.480 CAO VXL 13
VXL CAP CAP C 0 1 Y N N N N N 9.714 24.504 2.226 -0.237 -0.645 -3.563 CAP VXL 14
VXL CAQ CAQ C 0 1 Y N N N N N 16.614 18.947 1.890 6.576 1.617 -1.584 CAQ VXL 15
VXL CAR CAR C 0 1 Y N N N N N 16.827 17.705 3.943 8.016 0.774 0.144 CAR VXL 16
VXL CAS CAS C 0 1 Y N N N N N 15.519 19.626 2.412 5.495 1.510 -0.731 CAS VXL 17
VXL CAT CAT C 0 1 Y N N N N N 15.767 18.426 4.485 6.931 0.669 0.993 CAT VXL 18
VXL CAU CAU C 0 1 N N N N N N 5.478 25.848 3.818 -5.773 2.101 1.191 CAU VXL 19
VXL CAV CAV C 0 1 N N N N N N 7.893 27.034 4.574 -6.491 -0.905 2.111 CAV VXL 20
VXL CAW CAW C 0 1 N N N N N N 9.279 26.909 8.276 -4.649 -3.396 0.021 CAW VXL 21
VXL CAX CAX C 0 1 N N N N N N 11.887 23.733 2.934 0.266 0.407 -1.348 CAX VXL 22
VXL CAY CAY C 0 1 N N N N N N 13.757 22.168 6.228 3.885 -1.730 2.112 CAY VXL 23
VXL CAZ CAZ C 0 1 N N N N N N 14.495 22.841 4.061 2.567 -0.639 0.239 CAZ VXL 24
VXL NBA NBA N 0 1 N N N N N N 4.931 23.628 4.648 -6.109 4.551 1.208 NBA VXL 25
VXL NBB NBB N 0 1 N N N N N N 11.462 24.925 4.980 -1.221 -0.642 0.286 NBB VXL 26
VXL OBC OBC O 0 1 N N N N N N 18.323 17.307 2.130 8.906 1.352 -1.985 OBC VXL 27
VXL OBD OBD O 0 1 N N N N N N 5.788 26.056 5.202 -6.342 0.962 0.541 OBD VXL 28
VXL OBE OBE O 0 1 N N N N N N 8.087 28.177 5.417 -6.471 -2.326 1.857 OBE VXL 29
VXL OBF OBF O 0 1 N N N N N N 8.859 28.143 7.640 -6.064 -3.678 -0.013 OBF VXL 30
VXL OBG OBG O 0 1 N N N N N N 9.763 25.899 6.178 -3.475 -1.239 0.204 OBG VXL 31
VXL CBH CBH C 0 1 N N N N N N 4.806 24.482 3.621 -6.479 3.348 0.726 CBH VXL 32
VXL CBI CBI C 0 1 N N N N N N 10.508 24.793 5.908 -2.238 -1.282 -0.325 CBI VXL 33
VXL CBJ CBJ C 0 1 Y N N N N N 10.518 23.523 2.791 -0.668 0.120 -2.495 CBJ VXL 34
VXL CBK CBK C 0 1 Y N N N N N 17.255 17.973 2.646 7.841 1.248 -1.148 CBK VXL 35
VXL CBL CBL C 0 1 Y N N N N N 15.098 19.370 3.713 5.672 1.036 0.556 CBL VXL 36
VXL CBM CBM C 0 1 N N N N N N 14.687 22.382 7.420 4.547 -2.777 1.214 CBM VXL 37
VXL CBN CBN C 0 1 N N R N N N 13.717 24.040 4.614 1.160 -0.467 0.815 CBN VXL 38
VXL CBO CBO C 0 1 N N S N N N 12.224 23.799 4.421 0.125 -0.689 -0.289 CBO VXL 39
VXL CBP CBP C 0 1 N N R N N N 7.205 25.977 5.416 -5.741 -0.280 0.914 CBP VXL 40
VXL CBQ CBQ C 0 1 N N R N N N 8.874 25.833 7.303 -4.522 -1.950 -0.508 CBQ VXL 41
VXL NBR NBR N 0 1 N N N N N N 14.514 21.746 5.045 3.552 -0.545 1.319 NBR VXL 42
VXL CBS CBS C 0 1 N N R N N N 7.716 27.857 6.795 -6.710 -2.471 0.441 CBS VXL 43
VXL CBT CBT C 0 1 N N S N N N 7.513 26.357 6.857 -5.899 -1.318 -0.217 CBT VXL 44
VXL SBU SBU S 0 1 N N N N N N 13.828 20.360 4.440 4.290 0.902 1.642 SBU VXL 45
VXL HAA HAA H 0 1 N N N N N N 4.557 21.681 5.372 -6.679 5.866 -0.324 HAA VXL 46
VXL HAAA HAAA H 0 0 N N N N N N 3.310 22.335 4.257 -7.854 5.696 1.003 HAAA VXL 47
VXL HAAB HAAB H 0 0 N N N N N N 4.895 21.790 3.611 -6.361 6.633 1.251 HAAB VXL 48
VXL HAB HAB H 0 1 N N N N N N 19.801 15.976 2.722 10.426 1.568 -0.602 HAB VXL 49
VXL HABA HABA H 0 0 N N N N N N 19.279 17.162 3.966 10.139 -0.094 -1.173 HABA VXL 50
VXL HABB HABB H 0 0 N N N N N N 18.211 15.783 3.534 10.940 1.088 -2.237 HABB VXL 51
VXL HAC HAC H 0 1 N N N N N N 16.116 23.541 6.285 6.408 -3.023 0.156 HAC VXL 52
VXL HACA HACA H 0 0 N N N N N N 14.832 24.512 7.083 5.723 -1.383 0.068 HACA VXL 53
VXL HACB HACB H 0 0 N N N N N N 16.170 23.818 8.059 6.502 -1.943 1.568 HACB VXL 54
VXL HAD HAD H 0 1 N N N N N N 13.251 21.613 8.841 5.419 -3.855 2.863 HAD VXL 55
VXL HADA HADA H 0 0 N N N N N N 14.499 22.693 9.550 3.815 -4.444 2.365 HADA VXL 56
VXL HADB HADB H 0 0 N N N N N N 13.161 23.387 8.574 5.245 -4.809 1.370 HADB VXL 57
VXL HOAI HOAI H 0 0 N N N N N N 13.597 25.973 4.276 1.147 1.554 0.686 HOAI VXL 58
VXL HAL HAL H 0 1 N N N N N N 6.725 22.929 2.445 -3.052 -0.613 -5.421 HAL VXL 59
VXL HAM HAM H 0 1 N N N N N N 8.178 21.120 3.299 -3.819 0.753 -3.521 HAM VXL 60
VXL HAN HAN H 0 1 N N N N N N 7.731 25.019 1.584 -0.757 -1.504 -5.450 HAN VXL 61
VXL HAO HAO H 0 1 N N N N N N 10.607 21.515 3.542 -2.293 1.219 -1.645 HAO VXL 62
VXL HAP HAP H 0 1 N N N N N N 10.145 25.445 1.918 0.769 -1.037 -3.575 HAP VXL 63
VXL HAQ HAQ H 0 1 N N N N N N 16.967 19.177 0.896 6.437 1.982 -2.590 HAQ VXL 64
VXL HAR HAR H 0 1 N N N N N N 17.316 16.940 4.527 8.999 0.487 0.486 HAR VXL 65
VXL HAS HAS H 0 1 N N N N N N 14.995 20.352 1.808 4.510 1.797 -1.069 HAS VXL 66
VXL HAT HAT H 0 1 N N N N N N 15.463 18.252 5.507 7.067 0.299 1.998 HAT VXL 67
VXL HAU HAU H 0 1 N N N N N N 4.796 26.640 3.476 -5.889 1.999 2.270 HAU VXL 68
VXL HAUA HAUA H 0 0 N N N N N N 6.406 25.884 3.229 -4.714 2.169 0.944 HAUA VXL 69
VXL HAV HAV H 0 1 N N N N N N 7.262 27.301 3.713 -7.518 -0.541 2.147 HAV VXL 70
VXL HAVA HAVA H 0 0 N N N N N N 8.863 26.659 4.215 -5.974 -0.679 3.043 HAVA VXL 71
VXL HAW HAW H 0 1 N N N N N N 10.368 26.903 8.433 -4.273 -3.460 1.042 HAW VXL 72
VXL HAWA HAWA H 0 0 N N N N N N 8.768 26.774 9.241 -4.108 -4.086 -0.627 HAWA VXL 73
VXL HAX HAX H 0 1 N N N N N N 12.439 22.904 2.467 1.293 0.430 -1.713 HAX VXL 74
VXL HAXA HAXA H 0 0 N N N N N N 12.168 24.680 2.449 0.015 1.372 -0.907 HAXA VXL 75
VXL HAY HAY H 0 1 N N N N N N 13.020 21.391 6.481 2.974 -2.146 2.543 HAY VXL 76
VXL HAYA HAYA H 0 0 N N N N N N 13.235 23.110 6.005 4.571 -1.451 2.912 HAYA VXL 77
VXL HAZ HAZ H 0 1 N N N N N N 14.012 22.490 3.137 2.646 -1.615 -0.241 HAZ VXL 78
VXL HAZA HAZA H 0 0 N N N N N N 15.528 23.149 3.841 2.757 0.143 -0.496 HAZA VXL 79
VXL HNBA HNBA H 0 0 N N N N N N 5.373 23.900 5.503 -5.388 4.614 1.854 HNBA VXL 80
VXL HNBB HNBB H 0 0 N N N N N N 11.669 25.845 4.646 -1.381 -0.151 1.107 HNBB VXL 81
VXL HBM HBM H 0 1 N N N N N N 15.361 21.519 7.524 3.901 -2.986 0.362 HBM VXL 82
VXL HBN HBN H 0 1 N N N N N N 13.929 24.138 5.689 1.003 -1.194 1.612 HBN VXL 83
VXL HBO HBO H 0 1 N N N N N N 11.934 22.857 4.909 0.289 -1.663 -0.751 HBO VXL 84
VXL HBP HBP H 0 1 N N N N N N 7.601 24.977 5.185 -4.688 -0.136 1.158 HBP VXL 85
VXL HBQ HBQ H 0 1 N N N N N N 8.812 24.838 7.768 -4.320 -1.952 -1.579 HBQ VXL 86
VXL HBS HBS H 0 1 N N N N N N 6.813 28.396 7.117 -7.771 -2.446 0.192 HBS VXL 87
VXL HBT HBT H 0 1 N N N N N N 6.707 26.069 7.548 -6.372 -0.904 -1.108 HBT VXL 88
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VXL CAA NBA SING N N 1
VXL CAB OBC SING N N 2
VXL CAC CBM SING N N 3
VXL CAD CBM SING N N 4
VXL OAE CBH DOUB N N 5
VXL OAF CBI DOUB N N 6
VXL OAG SBU DOUB N N 7
VXL OAH SBU DOUB N N 8
VXL OAI CBN SING N N 9
VXL CAL CAM DOUB Y N 10
VXL CAL CAN SING Y N 11
VXL CAM CAO SING Y N 12
VXL CAN CAP DOUB Y N 13
VXL CAO CBJ DOUB Y N 14
VXL CAP CBJ SING Y N 15
VXL CAQ CAS DOUB Y N 16
VXL CAQ CBK SING Y N 17
VXL CAR CAT SING Y N 18
VXL CAR CBK DOUB Y N 19
VXL CAS CBL SING Y N 20
VXL CAT CBL DOUB Y N 21
VXL CAU OBD SING N N 22
VXL CAU CBH SING N N 23
VXL CAV OBE SING N N 24
VXL CAV CBP SING N N 25
VXL CAW OBF SING N N 26
VXL CAW CBQ SING N N 27
VXL CAX CBJ SING N N 28
VXL CAX CBO SING N N 29
VXL CAY CBM SING N N 30
VXL CAY NBR SING N N 31
VXL CAZ CBN SING N N 32
VXL CAZ NBR SING N N 33
VXL NBA CBH SING N N 34
VXL NBB CBI SING N N 35
VXL NBB CBO SING N N 36
VXL OBC CBK SING N N 37
VXL OBD CBP SING N N 38
VXL OBE CBS SING N N 39
VXL OBF CBS SING N N 40
VXL OBG CBI SING N N 41
VXL OBG CBQ SING N N 42
VXL CBL SBU SING N N 43
VXL CBN CBO SING N N 44
VXL CBP CBT SING N N 45
VXL CBQ CBT SING N N 46
VXL NBR SBU SING N N 47
VXL CBS CBT SING N N 48
VXL CAA HAA SING N N 49
VXL CAA HAAA SING N N 50
VXL CAA HAAB SING N N 51
VXL CAB HAB SING N N 52
VXL CAB HABA SING N N 53
VXL CAB HABB SING N N 54
VXL CAC HAC SING N N 55
VXL CAC HACA SING N N 56
VXL CAC HACB SING N N 57
VXL CAD HAD SING N N 58
VXL CAD HADA SING N N 59
VXL CAD HADB SING N N 60
VXL OAI HOAI SING N N 61
VXL CAL HAL SING N N 62
VXL CAM HAM SING N N 63
VXL CAN HAN SING N N 64
VXL CAO HAO SING N N 65
VXL CAP HAP SING N N 66
VXL CAQ HAQ SING N N 67
VXL CAR HAR SING N N 68
VXL CAS HAS SING N N 69
VXL CAT HAT SING N N 70
VXL CAU HAU SING N N 71
VXL CAU HAUA SING N N 72
VXL CAV HAV SING N N 73
VXL CAV HAVA SING N N 74
VXL CAW HAW SING N N 75
VXL CAW HAWA SING N N 76
VXL CAX HAX SING N N 77
VXL CAX HAXA SING N N 78
VXL CAY HAY SING N N 79
VXL CAY HAYA SING N N 80
VXL CAZ HAZ SING N N 81
VXL CAZ HAZA SING N N 82
VXL NBA HNBA SING N N 83
VXL NBB HNBB SING N N 84
VXL CBM HBM SING N N 85
VXL CBN HBN SING N N 86
VXL CBO HBO SING N N 87
VXL CBP HBP SING N N 88
VXL CBQ HBQ SING N N 89
VXL CBS HBS SING N N 90
VXL CBT HBT SING N N 91
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VXL SMILES ACDLabs 12.01 O=S(=O)(c1ccc(OC)cc1)N(CC(C)C)CC(O)C(NC(=O)OC2C3C(OCC(=O)NC)COC3OC2)Cc4ccccc4
VXL InChI InChI 1.03 InChI=1S/C31H43N3O10S/c1-20(2)15-34(45(38,39)23-12-10-22(40-4)11-13-23)16-25(35)24(14-21-8-6-5-7-9-21)33-31(37)44-27-18-43-30-29(27)26(17-42-30)41-19-28(36)32-3/h5-13,20,24-27,29-30,35H,14-19H2,1-4H3,(H,32,36)(H,33,37)/t24-,25+,26-,27-,29-,30+/m0/s1
VXL InChIKey InChI 1.03 RKOIHQGLQXEINT-RUVRZYSVSA-N
VXL SMILES_CANONICAL CACTVS 3.385 CNC(=O)CO[C@H]1CO[C@@H]2OC[C@H](OC(=O)N[C@@H](Cc3ccccc3)[C@H](O)CN(CC(C)C)[S](=O)(=O)c4ccc(OC)cc4)[C@H]12
VXL SMILES CACTVS 3.385 CNC(=O)CO[CH]1CO[CH]2OC[CH](OC(=O)N[CH](Cc3ccccc3)[CH](O)CN(CC(C)C)[S](=O)(=O)c4ccc(OC)cc4)[CH]12
VXL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CC(C)CN(C[C@H]([C@H](Cc1ccccc1)NC(=O)O[C@H]2CO[C@@H]3[C@H]2[C@H](CO3)OCC(=O)NC)O)S(=O)(=O)c4ccc(cc4)OC
VXL SMILES "OpenEye OEToolkits" 1.7.6 CC(C)CN(CC(C(Cc1ccccc1)NC(=O)OC2COC3C2C(CO3)OCC(=O)NC)O)S(=O)(=O)c4ccc(cc4)OC
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VXL "SYSTEMATIC NAME" ACDLabs 12.01 "(3R,3aS,4R,6aR)-4-[2-(methylamino)-2-oxoethoxy]hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamate"
VXL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(3R,3aS,4R,6aR)-3-[2-(methylamino)-2-oxidanylidene-ethoxy]-2,3,3a,4,5,6a-hexahydrofuro[2,3-b]furan-4-yl] N-[(2S,3R)-4-[(4-methoxyphenyl)sulfonyl-(2-methylpropyl)amino]-3-oxidanyl-1-phenyl-butan-2-yl]carbamate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VXL 'Create component' 2015-02-05 EBI
VXL 'Initial release' 2015-05-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
VXL CAA C 19.446 -1.119 1
VXL CAB C 13.037 8.436 2
VXL CAC C 5.084 3.486 3
VXL CAD C 7.555 4.289 4
VXL OAE O 16.511 -1.738 5
VXL OAF O 9.332 -5.385 6
VXL OAG O 8.371 3.554 7
VXL OAH O 10.601 1.547 8
VXL OAI O 6.475 -0.794 9
VXL CAL C 3.000 -2.711 10
VXL CAM C 4.004 -1.596 11
VXL CAN C 3.463 -4.138 12
VXL CAO C 5.471 -1.908 13
VXL CAP C 4.931 -4.450 14
VXL CAQ C 12.960 4.468 15
VXL CAR C 11.030 6.207 16
VXL CAS C 11.957 3.353 17
VXL CAT C 10.026 5.092 18
VXL CAU C 17.047 -4.280 19
VXL CAV C 15.988 -7.223 20
VXL CAW C 11.385 -7.223 21
VXL CAX C 7.402 -3.647 22
VXL CAY C 7.015 1.748 23
VXL CAZ C 8.946 0.009 24
VXL NBA N 18.980 -2.545 25
VXL NBB N 9.873 -2.844 26
VXL OBC O 13.500 7.010 27
VXL OBD O 15.579 -4.590 28
VXL OBE O 15.113 -8.430 29
VXL OBF O 12.267 -8.436 30
VXL OBG O 11.803 -4.582 31
VXL CBH C 17.512 -2.854 32
VXL CBI C 10.336 -4.271 33
VXL CBJ C 5.934 -3.335 34
VXL CBK C 12.497 5.895 35
VXL CBL C 10.489 3.665 36
VXL CBM C 6.551 3.174 37
VXL CBN C 7.942 -1.105 38
VXL CBO C 8.405 -2.532 39
VXL CBP C 15.113 -6.015 40
VXL CBQ C 12.267 -6.009 41
VXL NBR N 8.482 1.436 42
VXL CBS C 13.694 -7.973 43
VXL CBT C 13.694 -6.473 44
VXL SBU S 9.486 2.551 45
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
VXL CAA NBA SINGLE NONE 1
VXL CAB OBC SINGLE NONE 2
VXL CAC CBM SINGLE NONE 3
VXL CAD CBM SINGLE NONE 4
VXL OAE CBH DOUBLE NONE 5
VXL OAF CBI DOUBLE NONE 6
VXL OAG SBU DOUBLE NONE 7
VXL OAH SBU DOUBLE NONE 8
VXL CBN OAI SINGLE BEGINDASH 9
VXL CAL CAM DOUBLE NONE 10
VXL CAL CAN SINGLE NONE 11
VXL CAM CAO SINGLE NONE 12
VXL CAN CAP DOUBLE NONE 13
VXL CAO CBJ DOUBLE NONE 14
VXL CAP CBJ SINGLE NONE 15
VXL CAQ CAS DOUBLE NONE 16
VXL CAQ CBK SINGLE NONE 17
VXL CAR CAT SINGLE NONE 18
VXL CAR CBK DOUBLE NONE 19
VXL CAS CBL SINGLE NONE 20
VXL CAT CBL DOUBLE NONE 21
VXL CAU OBD SINGLE NONE 22
VXL CAU CBH SINGLE NONE 23
VXL CAV OBE SINGLE NONE 24
VXL CAV CBP SINGLE NONE 25
VXL CAW OBF SINGLE NONE 26
VXL CAW CBQ SINGLE NONE 27
VXL CAX CBJ SINGLE NONE 28
VXL CBO CAX SINGLE BEGINWEDGE 29
VXL CAY CBM SINGLE NONE 30
VXL CAY NBR SINGLE NONE 31
VXL CAZ CBN SINGLE NONE 32
VXL CAZ NBR SINGLE NONE 33
VXL NBA CBH SINGLE NONE 34
VXL NBB CBI SINGLE NONE 35
VXL NBB CBO SINGLE NONE 36
VXL OBC CBK SINGLE NONE 37
VXL CBP OBD SINGLE BEGINWEDGE 38
VXL OBE CBS SINGLE NONE 39
VXL OBF CBS SINGLE NONE 40
VXL OBG CBI SINGLE NONE 41
VXL CBQ OBG SINGLE BEGINDASH 42
VXL CBL SBU SINGLE NONE 43
VXL CBN CBO SINGLE NONE 44
VXL CBP CBT SINGLE NONE 45
VXL CBQ CBT SINGLE NONE 46
VXL NBR SBU SINGLE NONE 47
VXL CBS CBT SINGLE NONE 48
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
VXL MurckoScaffold S1 scaffold 'O=C(N[C@H](CCNS(=O)(=O)c1ccccc1)Cc1ccccc1)O[C@H]1CO[C@H]2OCC[C@H]21' InChI=1S/C23H28N2O6S/c26-23(31-21-16-30-22-20(21)12-14-29-22)25-18(15-17-7-3-1-4-8-17)11-13-24-32(27,28)19-9-5-2-6-10-19/h1-10,18,20-22,24H,11-16H2,(H,25,26)/t18-,20+,21+,22-/m1/s1 FMDUZJYOYDAUAU-RYFAJOAYSA-N
VXL amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
VXL furanose F2 fragment OC1CCCO1 InChI=1S/C4H8O2/c5-4-2-1-3-6-4/h4-5H,1-3H2 JNODDICFTDYODH-UHFFFAOYSA-N
VXL phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
VXL Z45527544 F4 fragment COc1ccc(S(=O)(=O)N(C)C)cc1 InChI=1S/C9H13NO3S/c1-10(2)14(11,12)9-6-4-8(13-3)5-7-9/h4-7H,1-3H3 VPSAYJPTDGAIHN-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
VXL OAF S1 1
VXL OAG S1 1
VXL OAH S1 1
VXL CAL S1 1
VXL CAM S1 1
VXL CAN S1 1
VXL CAO S1 1
VXL CAP S1 1
VXL CAQ S1 1
VXL CAR S1 1
VXL CAS S1 1
VXL CAT S1 1
VXL CAV S1 1
VXL CAW S1 1
VXL CAX S1 1
VXL CAZ S1 1
VXL NBB S1 1
VXL OBE S1 1
VXL OBF S1 1
VXL OBG S1 1
VXL CBI S1 1
VXL CBJ S1 1
VXL CBK S1 1
VXL CBL S1 1
VXL CBN S1 1
VXL CBO S1 1
VXL CBP S1 1
VXL CBQ S1 1
VXL NBR S1 1
VXL CBS S1 1
VXL CBT S1 1
VXL SBU S1 1
VXL NBA F1 1
VXL CBH F1 1
VXL OAE F1 1
VXL CAU F1 1
VXL CBP F2 1
VXL CAV F2 1
VXL OBE F2 1
VXL CBS F2 1
VXL CBT F2 1
VXL OBF F2 1
VXL CBQ F2 2
VXL CAW F2 2
VXL OBF F2 2
VXL CBS F2 2
VXL CBT F2 2
VXL OBE F2 2
VXL CAL F3 1
VXL CAM F3 1
VXL CAO F3 1
VXL CBJ F3 1
VXL CAP F3 1
VXL CAN F3 1
VXL CAQ F3 2
VXL CAS F3 2
VXL CBL F3 2
VXL CAT F3 2
VXL CAR F3 2
VXL CBK F3 2
VXL CAB F4 1
VXL OBC F4 1
VXL CBK F4 1
VXL CAQ F4 1
VXL CAS F4 1
VXL CBL F4 1
VXL CAT F4 1
VXL CAR F4 1
VXL SBU F4 1
VXL OAG F4 1
VXL OAH F4 1
VXL NBR F4 1
VXL CAY F4 1
VXL CAZ F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id VXL
_pdbe_chem_comp_rdkit_properties.exactmw 649.267
_pdbe_chem_comp_rdkit_properties.amw 649.763
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 20
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 45
_pdbe_chem_comp_rdkit_properties.NumAtoms 88
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.548
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 324.333
_pdbe_chem_comp_rdkit_properties.tpsa 161.960
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.918
_pdbe_chem_comp_rdkit_properties.CrippenMR 162.619
_pdbe_chem_comp_rdkit_properties.chi0v 22.149
_pdbe_chem_comp_rdkit_properties.chi1v 12.405
_pdbe_chem_comp_rdkit_properties.chi2v 5.803
_pdbe_chem_comp_rdkit_properties.chi3v 5.803
_pdbe_chem_comp_rdkit_properties.chi4v 3.641
_pdbe_chem_comp_rdkit_properties.chi0n 64.332
_pdbe_chem_comp_rdkit_properties.chi1n 32.268
_pdbe_chem_comp_rdkit_properties.chi2n 4.420
_pdbe_chem_comp_rdkit_properties.chi3n 4.420
_pdbe_chem_comp_rdkit_properties.chi4n 2.684
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.270
_pdbe_chem_comp_rdkit_properties.kappa1 8.995
_pdbe_chem_comp_rdkit_properties.kappa2 15.829
_pdbe_chem_comp_rdkit_properties.kappa3 9.146
_pdbe_chem_comp_rdkit_properties.Phi 3.164
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
VXL UniChem ZINC ZINC000230458957
VXL UniChem PubChem 91754604
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
VXL CAA 5.826 2.092 3.414 ETKDGv3 1
VXL CAB -3.865 3.044 -5.623 ETKDGv3 2
VXL CAC -5.723 -0.853 2.341 ETKDGv3 3
VXL CAD -3.881 -0.167 3.915 ETKDGv3 4
VXL OAE 3.389 1.103 2.339 ETKDGv3 5
VXL OAF 0.446 -1.266 -2.999 ETKDGv3 6
VXL OAG -0.356 2.459 1.268 ETKDGv3 7
VXL OAH -2.597 3.295 1.689 ETKDGv3 8
VXL OAI -2.254 -0.379 -1.261 ETKDGv3 9
VXL CAL -0.556 -3.629 4.269 ETKDGv3 10
VXL CAM -1.788 -3.673 3.748 ETKDGv3 11
VXL CAN 0.623 -3.658 3.380 ETKDGv3 12
VXL CAO -1.970 -3.733 2.283 ETKDGv3 13
VXL CAP 0.461 -3.708 2.052 ETKDGv3 14
VXL CAQ -1.125 2.442 -3.028 ETKDGv3 15
VXL CAR -3.517 2.808 -2.710 ETKDGv3 16
VXL CAS -0.929 2.324 -1.710 ETKDGv3 17
VXL CAT -3.299 2.675 -1.255 ETKDGv3 18
VXL CAU 4.394 -0.573 0.964 ETKDGv3 19
VXL CAV 5.546 1.845 -1.202 ETKDGv3 20
VXL CAW 2.543 1.043 -3.401 ETKDGv3 21
VXL CAX -1.087 -3.728 -0.035 ETKDGv3 22
VXL CAY -3.754 0.453 1.455 ETKDGv3 23
VXL CAZ -1.420 -0.439 1.005 ETKDGv3 24
VXL NBA 5.719 0.979 2.479 ETKDGv3 25
VXL NBB 0.414 -1.869 -0.737 ETKDGv3 26
VXL OBC -2.629 2.808 -4.957 ETKDGv3 27
VXL OBD 5.208 -0.298 -0.160 ETKDGv3 28
VXL OBE 5.316 2.386 -2.479 ETKDGv3 29
VXL OBF 3.615 1.796 -3.917 ETKDGv3 30
VXL OBG 2.329 -0.765 -1.759 ETKDGv3 31
VXL CBH 4.456 0.547 1.962 ETKDGv3 32
VXL CBI 1.041 -1.291 -1.888 ETKDGv3 33
VXL CBJ -0.902 -3.715 1.463 ETKDGv3 34
VXL CBK -2.480 2.696 -3.566 ETKDGv3 35
VXL CBL -2.070 2.441 -0.774 ETKDGv3 36
VXL CBM -4.218 -0.599 2.481 ETKDGv3 37
VXL CBN -1.963 -1.258 -0.206 ETKDGv3 38
VXL CBO -0.974 -2.347 -0.729 ETKDGv3 39
VXL CBP 4.612 0.670 -1.011 ETKDGv3 40
VXL CBQ 3.095 -0.257 -2.852 ETKDGv3 41
VXL NBR -2.291 0.654 1.514 ETKDGv3 42
VXL CBS 4.795 1.350 -3.283 ETKDGv3 43
VXL CBT 4.489 0.136 -2.426 ETKDGv3 44
VXL SBU -1.811 2.243 0.956 ETKDGv3 45
VXL HAA 6.891 2.263 3.677 ETKDGv3 46
VXL HAAA 5.260 1.860 4.341 ETKDGv3 47
VXL HAAB 5.418 3.014 2.949 ETKDGv3 48
VXL HAB -4.295 4.016 -5.298 ETKDGv3 49
VXL HABA -3.686 3.084 -6.717 ETKDGv3 50
VXL HABB -4.578 2.220 -5.410 ETKDGv3 51
VXL HAC -5.957 -1.206 1.314 ETKDGv3 52
VXL HACA -6.048 -1.638 3.057 ETKDGv3 53
VXL HACB -6.298 0.077 2.542 ETKDGv3 54
VXL HAD -2.783 -0.054 4.037 ETKDGv3 55
VXL HADA -4.373 0.799 4.160 ETKDGv3 56
VXL HADB -4.224 -0.938 4.637 ETKDGv3 57
VXL HOAI -2.941 -0.817 -1.828 ETKDGv3 58
VXL HAL -0.421 -3.583 5.342 ETKDGv3 59
VXL HAM -2.654 -3.658 4.397 ETKDGv3 60
VXL HAN 1.618 -3.650 3.806 ETKDGv3 61
VXL HAO -2.975 -3.773 1.882 ETKDGv3 62
VXL HAP 1.333 -3.755 1.412 ETKDGv3 63
VXL HAQ -0.289 2.350 -3.708 ETKDGv3 64
VXL HAR -4.522 2.993 -3.063 ETKDGv3 65
VXL HAS 0.065 2.128 -1.330 ETKDGv3 66
VXL HAT -4.147 2.759 -0.586 ETKDGv3 67
VXL HAU 3.344 -0.796 0.671 ETKDGv3 68
VXL HAUA 4.782 -1.489 1.456 ETKDGv3 69
VXL HAV 6.609 1.523 -1.132 ETKDGv3 70
VXL HAVA 5.359 2.619 -0.427 ETKDGv3 71
VXL HAW 1.805 0.844 -4.206 ETKDGv3 72
VXL HAWA 2.049 1.628 -2.596 ETKDGv3 73
VXL HAX -2.076 -4.172 -0.287 ETKDGv3 74
VXL HAXA -0.330 -4.412 -0.478 ETKDGv3 75
VXL HAY -4.277 1.404 1.697 ETKDGv3 76
VXL HAYA -4.081 0.183 0.430 ETKDGv3 77
VXL HAZ -0.426 -0.022 0.744 ETKDGv3 78
VXL HAZA -1.230 -1.124 1.852 ETKDGv3 79
VXL HNBA 6.592 0.496 2.169 ETKDGv3 80
VXL HNBB 0.942 -1.822 0.162 ETKDGv3 81
VXL HBM -3.700 -1.556 2.284 ETKDGv3 82
VXL HBN -2.896 -1.778 0.105 ETKDGv3 83
VXL HBO -1.270 -2.565 -1.780 ETKDGv3 84
VXL HBP 3.634 1.076 -0.649 ETKDGv3 85
VXL HBQ 3.157 -1.017 -3.663 ETKDGv3 86
VXL HBS 5.542 1.085 -4.064 ETKDGv3 87
VXL HBT 5.220 -0.683 -2.615 ETKDGv3 88
#