data_VW7
#
_chem_comp.id VW7
_chem_comp.name N-(8-methyl-1,2,3,4-tetrahydroquinolin-5-yl)acetamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H16 N2 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-09-17
_chem_comp.pdbx_modified_date 2020-09-25
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 204.268
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VW7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5RLM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VW7 N1 N1 N 0 1 N N N N N N -6.729 5.858 -48.192 1.962 0.578 -0.423 N1 VW7 1
VW7 C4 C1 C 0 1 Y N N N N N -6.301 6.373 -45.845 0.823 -1.544 -0.310 C4 VW7 2
VW7 C5 C2 C 0 1 Y N N N N N -6.748 6.515 -44.540 -0.344 -2.270 -0.172 C5 VW7 3
VW7 C6 C3 C 0 1 Y N N N N N -8.065 6.293 -44.208 -1.548 -1.617 -0.009 C6 VW7 4
VW7 C7 C4 C 0 1 N N N N N N -8.527 6.457 -42.790 -2.817 -2.415 0.141 C7 VW7 5
VW7 C8 C5 C 0 1 Y N N N N N -8.970 5.920 -45.226 -1.601 -0.221 0.018 C8 VW7 6
VW7 C10 C6 C 0 1 N N N N N N -10.941 5.543 -47.239 -1.749 2.534 0.446 C10 VW7 7
VW7 C1 C7 C 0 1 N N N N N N -5.479 5.183 -50.139 4.366 0.944 0.029 C1 VW7 8
VW7 C2 C8 C 0 1 N N N N N N -6.028 4.855 -48.779 3.115 0.107 0.091 C2 VW7 9
VW7 O1 O1 O 0 1 N N N N N N -5.853 3.755 -48.263 3.146 -0.992 0.604 O1 VW7 10
VW7 C3 C9 C 0 1 Y N N N N N -7.170 5.974 -46.848 0.780 -0.157 -0.282 C3 VW7 11
VW7 N2 N2 N 0 1 N N N N N N -10.286 5.691 -44.929 -2.849 0.375 0.193 N2 VW7 12
VW7 C9 C10 C 0 1 N N N N N N -11.149 4.994 -45.862 -2.886 1.771 -0.246 C9 VW7 13
VW7 C11 C11 C 0 1 N N N N N N -9.491 5.375 -47.638 -0.424 2.014 -0.121 C11 VW7 14
VW7 C12 C12 C 0 1 Y N N N N N -8.524 5.781 -46.550 -0.433 0.506 -0.124 C12 VW7 15
VW7 H4 H1 H 0 1 N N N N N N -6.968 6.623 -48.790 1.951 1.429 -0.888 H4 VW7 16
VW7 H5 H2 H 0 1 N N N N N N -5.267 6.575 -46.082 1.766 -2.054 -0.435 H5 VW7 17
VW7 H6 H3 H 0 1 N N N N N N -6.049 6.805 -43.769 -0.314 -3.349 -0.191 H6 VW7 18
VW7 H7 H4 H 0 1 N N N N N N -8.429 5.499 -42.259 -2.993 -2.622 1.197 H7 VW7 19
VW7 H8 H5 H 0 1 N N N N N N -7.910 7.218 -42.289 -3.654 -1.846 -0.262 H8 VW7 20
VW7 H9 H6 H 0 1 N N N N N N -9.580 6.775 -42.782 -2.721 -3.355 -0.402 H9 VW7 21
VW7 H14 H7 H 0 1 N N N N N N -11.203 6.611 -47.251 -1.843 3.600 0.242 H14 VW7 22
VW7 H13 H8 H 0 1 N N N N N N -11.582 5.001 -47.950 -1.789 2.359 1.521 H13 VW7 23
VW7 H2 H9 H 0 1 N N N N N N -4.938 4.311 -50.537 4.903 0.728 -0.895 H2 VW7 24
VW7 H1 H10 H 0 1 N N N N N N -6.307 5.441 -50.816 4.098 2.000 0.055 H1 VW7 25
VW7 H3 H11 H 0 1 N N N N N N -4.790 6.037 -50.060 5.003 0.710 0.882 H3 VW7 26
VW7 H10 H12 H 0 1 N N N N N N -10.702 6.586 -44.770 -3.160 0.288 1.149 H10 VW7 27
VW7 H11 H13 H 0 1 N N N N N N -12.199 5.135 -45.566 -3.843 2.215 0.026 H11 VW7 28
VW7 H12 H14 H 0 1 N N N N N N -10.907 3.921 -45.854 -2.753 1.818 -1.327 H12 VW7 29
VW7 H15 H15 H 0 1 N N N N N N -9.316 4.317 -47.884 -0.295 2.384 -1.138 H15 VW7 30
VW7 H16 H16 H 0 1 N N N N N N -9.299 5.995 -48.526 0.399 2.366 0.500 H16 VW7 31
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VW7 C1 C2 SING N N 1
VW7 C2 O1 DOUB N N 2
VW7 C2 N1 SING N N 3
VW7 N1 C3 SING N N 4
VW7 C11 C10 SING N N 5
VW7 C11 C12 SING N N 6
VW7 C10 C9 SING N N 7
VW7 C3 C12 DOUB Y N 8
VW7 C3 C4 SING Y N 9
VW7 C12 C8 SING Y N 10
VW7 C9 N2 SING N N 11
VW7 C4 C5 DOUB Y N 12
VW7 C8 N2 SING N N 13
VW7 C8 C6 DOUB Y N 14
VW7 C5 C6 SING Y N 15
VW7 C6 C7 SING N N 16
VW7 N1 H4 SING N N 17
VW7 C4 H5 SING N N 18
VW7 C5 H6 SING N N 19
VW7 C7 H7 SING N N 20
VW7 C7 H8 SING N N 21
VW7 C7 H9 SING N N 22
VW7 C10 H14 SING N N 23
VW7 C10 H13 SING N N 24
VW7 C1 H2 SING N N 25
VW7 C1 H1 SING N N 26
VW7 C1 H3 SING N N 27
VW7 N2 H10 SING N N 28
VW7 C9 H11 SING N N 29
VW7 C9 H12 SING N N 30
VW7 C11 H15 SING N N 31
VW7 C11 H16 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VW7 SMILES ACDLabs 12.01 N(c2ccc(C)c1NCCCc12)C(C)=O
VW7 InChI InChI 1.03 InChI=1S/C12H16N2O/c1-8-5-6-11(14-9(2)15)10-4-3-7-13-12(8)10/h5-6,13H,3-4,7H2,1-2H3,(H,14,15)
VW7 InChIKey InChI 1.03 RYRDUZSMONMBBE-UHFFFAOYSA-N
VW7 SMILES_CANONICAL CACTVS 3.385 CC(=O)Nc1ccc(C)c2NCCCc12
VW7 SMILES CACTVS 3.385 CC(=O)Nc1ccc(C)c2NCCCc12
VW7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1ccc(c2c1NCCC2)NC(=O)C
VW7 SMILES "OpenEye OEToolkits" 2.0.7 Cc1ccc(c2c1NCCC2)NC(=O)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VW7 "SYSTEMATIC NAME" ACDLabs 12.01 N-(8-methyl-1,2,3,4-tetrahydroquinolin-5-yl)acetamide
VW7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 ~{N}-(8-methyl-1,2,3,4-tetrahydroquinolin-5-yl)ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VW7 'Create component' 2020-09-17 RCSB
VW7 'Initial release' 2020-09-30 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
VW7 N1 N 5.598 1.875 1
VW7 C4 C 4.299 -0.375 2
VW7 C5 C 4.299 -1.875 3
VW7 C6 C 5.598 -2.625 4
VW7 C7 C 5.598 -4.125 5
VW7 C8 C 6.897 -1.875 6
VW7 C10 C 9.597 -0.344 7
VW7 C1 C 3.000 1.875 8
VW7 C2 C 4.299 2.625 9
VW7 O1 O 4.299 4.125 10
VW7 C3 C 5.598 0.375 11
VW7 N2 N 8.238 -2.677 12
VW7 C9 C 9.597 -1.906 13
VW7 C11 C 8.238 0.427 14
VW7 C12 C 6.897 -0.375 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
VW7 C1 C2 SINGLE NONE 1
VW7 C2 O1 DOUBLE NONE 2
VW7 C2 N1 SINGLE NONE 3
VW7 N1 C3 SINGLE NONE 4
VW7 C11 C10 SINGLE NONE 5
VW7 C11 C12 SINGLE NONE 6
VW7 C10 C9 SINGLE NONE 7
VW7 C3 C12 SINGLE NONE 8
VW7 C3 C4 DOUBLE NONE 9
VW7 C12 C8 DOUBLE NONE 10
VW7 C9 N2 SINGLE NONE 11
VW7 C4 C5 SINGLE NONE 12
VW7 C8 N2 SINGLE NONE 13
VW7 C8 C6 SINGLE NONE 14
VW7 C5 C6 DOUBLE NONE 15
VW7 C6 C7 SINGLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
VW7 MurckoScaffold S1 scaffold c1ccc2c(c1)CCCN2 InChI=1S/C9H11N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-2,4,6,10H,3,5,7H2 LBUJPTNKIBCYBY-UHFFFAOYSA-N
VW7 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
VW7 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
VW7 Z1650168321 F3 fragment CC(=O)Nc1ccc(C)c2c1CCCN2 InChI=1S/C12H16N2O/c1-8-5-6-11(14-9(2)15)10-4-3-7-13-12(8)10/h5-6,13H,3-4,7H2,1-2H3,(H,14,15) RYRDUZSMONMBBE-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
VW7 C4 S1 1
VW7 C5 S1 1
VW7 C6 S1 1
VW7 C8 S1 1
VW7 C10 S1 1
VW7 C3 S1 1
VW7 N2 S1 1
VW7 C9 S1 1
VW7 C11 S1 1
VW7 C12 S1 1
VW7 N1 F1 1
VW7 C2 F1 1
VW7 O1 F1 1
VW7 C1 F1 1
VW7 C4 F2 1
VW7 C3 F2 1
VW7 C12 F2 1
VW7 C8 F2 1
VW7 C6 F2 1
VW7 C5 F2 1
VW7 C1 F3 1
VW7 C2 F3 1
VW7 O1 F3 1
VW7 N1 F3 1
VW7 C3 F3 1
VW7 C4 F3 1
VW7 C5 F3 1
VW7 C6 F3 1
VW7 C7 F3 1
VW7 C8 F3 1
VW7 N2 F3 1
VW7 C9 F3 1
VW7 C10 F3 1
VW7 C11 F3 1
VW7 C12 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id VW7
_pdbe_chem_comp_rdkit_properties.exactmw 204.126
_pdbe_chem_comp_rdkit_properties.amw 204.273
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 31
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.417
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 112.472
_pdbe_chem_comp_rdkit_properties.tpsa 41.130
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.441
_pdbe_chem_comp_rdkit_properties.CrippenMR 60.113
_pdbe_chem_comp_rdkit_properties.chi0v 7.303
_pdbe_chem_comp_rdkit_properties.chi1v 3.849
_pdbe_chem_comp_rdkit_properties.chi2v 1.641
_pdbe_chem_comp_rdkit_properties.chi3v 1.641
_pdbe_chem_comp_rdkit_properties.chi4v 1.070
_pdbe_chem_comp_rdkit_properties.chi0n 23.303
_pdbe_chem_comp_rdkit_properties.chi1n 11.743
_pdbe_chem_comp_rdkit_properties.chi2n 1.641
_pdbe_chem_comp_rdkit_properties.chi3n 1.641
_pdbe_chem_comp_rdkit_properties.chi4n 1.070
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.510
_pdbe_chem_comp_rdkit_properties.kappa1 2.264
_pdbe_chem_comp_rdkit_properties.kappa2 3.928
_pdbe_chem_comp_rdkit_properties.kappa3 1.959
_pdbe_chem_comp_rdkit_properties.Phi 0.593
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
VW7 UniChem ZINC ZINC000095347520
VW7 UniChem PubChem 71757930
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
VW7 N1 2.314 -0.640 -0.425 ETKDGv3 1
VW7 C4 0.606 -2.251 0.022 ETKDGv3 2
VW7 C5 -0.784 -2.626 0.322 ETKDGv3 3
VW7 C6 -1.744 -1.691 0.400 ETKDGv3 4
VW7 C7 -3.156 -2.096 0.729 ETKDGv3 5
VW7 C8 -1.402 -0.260 0.131 ETKDGv3 6
VW7 C10 -0.952 2.325 -0.997 ETKDGv3 7
VW7 C1 4.471 0.590 0.078 ETKDGv3 8
VW7 C2 3.068 0.223 0.435 ETKDGv3 9
VW7 O1 2.579 0.625 1.526 ETKDGv3 10
VW7 C3 0.941 -0.969 -0.170 ETKDGv3 11
VW7 N2 -2.438 0.743 0.113 ETKDGv3 12
VW7 C9 -2.133 2.161 -0.048 ETKDGv3 13
VW7 C11 0.242 1.522 -0.475 ETKDGv3 14
VW7 C12 -0.121 0.082 -0.163 ETKDGv3 15
VW7 H4 2.825 -1.178 -1.161 ETKDGv3 16
VW7 H5 1.365 -3.024 -0.007 ETKDGv3 17
VW7 H6 -1.010 -3.671 0.495 ETKDGv3 18
VW7 H7 -3.224 -3.165 1.024 ETKDGv3 19
VW7 H8 -3.805 -1.936 -0.157 ETKDGv3 20
VW7 H9 -3.532 -1.488 1.579 ETKDGv3 21
VW7 H14 -1.235 1.961 -2.010 ETKDGv3 22
VW7 H13 -0.678 3.399 -1.074 ETKDGv3 23
VW7 H2 5.152 -0.243 0.352 ETKDGv3 24
VW7 H1 4.781 1.508 0.621 ETKDGv3 25
VW7 H3 4.546 0.780 -1.013 ETKDGv3 26
VW7 H10 -3.444 0.469 0.175 ETKDGv3 27
VW7 H11 -1.881 2.595 0.944 ETKDGv3 28
VW7 H12 -3.020 2.695 -0.452 ETKDGv3 29
VW7 H15 0.624 2.006 0.449 ETKDGv3 30
VW7 H16 1.045 1.556 -1.243 ETKDGv3 31
#