data_VS2
#
_chem_comp.id VS2
_chem_comp.name '3-[N-[BENZYLOXYCARBONYL]-PHENYLALANINYL-AMINO]-5-PHENYL-PENTANE-1-SULFONYLMETHYLBENZENE'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C35 H38 N2 O5 S'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-06-09
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 598.752
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VS2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1F2A
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VS2 C1 C1 C 0 1 Y N N N N N 1.142 -12.973 1.191 -1.487 -0.680 -7.079 C1 VS2 1
VS2 C2 C2 C 0 1 Y N N N N N 0.947 -12.272 -0.019 -2.725 -1.245 -7.318 C2 VS2 2
VS2 C3 C3 C 0 1 Y N N N N N -0.355 -11.946 -0.454 -2.880 -2.165 -8.338 C3 VS2 3
VS2 C4 C4 C 0 1 Y N N N N N -1.467 -12.317 0.315 -1.796 -2.519 -9.120 C4 VS2 4
VS2 C5 C5 C 0 1 Y N N N N N -1.284 -13.021 1.513 -0.558 -1.954 -8.881 C5 VS2 5
VS2 C6 C6 C 0 1 Y N N N N N 0.015 -13.351 1.954 -0.404 -1.031 -7.864 C6 VS2 6
VS2 C7 C7 C 0 1 N N N N N N 2.535 -13.113 1.761 -1.318 0.322 -5.967 C7 VS2 7
VS2 O1 O1 O 0 1 N N N N N N 2.952 -11.906 2.402 -0.969 -0.370 -4.739 O1 VS2 8
VS2 C8 C8 C 0 1 N N N N N N 4.061 -11.906 3.160 -0.768 0.328 -3.606 C8 VS2 9
VS2 O2 O2 O 0 1 N N N N N N 4.633 -12.937 3.516 -0.878 1.538 -3.611 O2 VS2 10
VS2 N1 N1 N 0 1 N N N N N N 4.371 -10.669 3.642 -0.449 -0.315 -2.465 N1 VS2 11
VS2 C9 C9 C 0 1 N N S N N N 5.375 -10.456 4.698 -0.236 0.444 -1.231 C9 VS2 12
VS2 C10 C10 C 0 1 N N N N N N 5.722 -8.968 4.839 -1.563 0.582 -0.482 C10 VS2 13
VS2 C11 C11 C 0 1 Y N N N N N 5.991 -8.340 3.500 -2.558 1.306 -1.351 C11 VS2 14
VS2 C12 C12 C 0 1 Y N N N N N 5.217 -7.227 3.141 -3.380 0.592 -2.204 C12 VS2 15
VS2 C13 C13 C 0 1 Y N N N N N 5.368 -6.643 1.876 -4.293 1.256 -3.001 C13 VS2 16
VS2 C14 C14 C 0 1 Y N N N N N 6.289 -7.162 0.955 -4.385 2.634 -2.947 C14 VS2 17
VS2 C15 C15 C 0 1 Y N N N N N 7.060 -8.278 1.304 -3.564 3.348 -2.094 C15 VS2 18
VS2 C16 C16 C 0 1 Y N N N N N 6.915 -8.867 2.576 -2.654 2.684 -1.293 C16 VS2 19
VS2 C17 C17 C 0 1 N N N N N N 4.858 -10.962 5.998 0.758 -0.279 -0.361 C17 VS2 20
VS2 O3 O3 O 0 1 N N N N N N 3.651 -10.954 6.265 1.242 -1.326 -0.736 O3 VS2 21
VS2 N2 N2 N 0 1 N N N N N N 5.772 -11.359 6.916 1.111 0.237 0.832 N2 VS2 22
VS2 C18 C18 C 0 1 N N S N N N 5.306 -11.784 8.237 2.078 -0.466 1.677 C18 VS2 23
VS2 C19 C19 C 0 1 N N N N N N 5.613 -13.308 8.406 3.492 0.011 1.341 C19 VS2 24
VS2 C20 C20 C 0 1 N N N N N N 4.820 -14.180 7.427 3.793 -0.281 -0.129 C20 VS2 25
VS2 C21 C21 C 0 1 Y N N N N N 5.124 -15.640 7.626 5.185 0.189 -0.461 C21 VS2 26
VS2 C22 C22 C 0 1 Y N N N N N 4.638 -16.337 8.745 6.259 -0.667 -0.310 C22 VS2 27
VS2 C23 C23 C 0 1 Y N N N N N 4.988 -17.685 8.953 7.537 -0.235 -0.614 C23 VS2 28
VS2 C24 C24 C 0 1 Y N N N N N 5.825 -18.337 8.030 7.740 1.053 -1.069 C24 VS2 29
VS2 C25 C25 C 0 1 Y N N N N N 6.299 -17.654 6.899 6.666 1.910 -1.220 C25 VS2 30
VS2 C26 C26 C 0 1 Y N N N N N 5.950 -16.308 6.701 5.388 1.477 -0.921 C26 VS2 31
VS2 C28 C28 C 0 1 N N N N N N 7.221 -11.357 9.630 0.363 -0.652 3.485 C28 VS2 32
VS2 S1 S1 S 0 1 N N N N N N 7.806 -11.748 11.214 0.007 -0.305 5.230 S1 VS2 33
VS2 O4 O4 O 0 1 N N N N N N 6.963 -12.822 11.716 0.859 -1.100 6.043 O4 VS2 34
VS2 O5 O5 O 0 1 N N N N N N 7.947 -10.599 12.082 -0.033 1.102 5.422 O5 VS2 35
VS2 C29 C29 C 0 1 N N N N N N 9.465 -12.437 10.886 -1.680 -0.962 5.324 C29 VS2 36
VS2 C30 C30 C 0 1 Y N N N N N 9.515 -13.709 10.020 -2.212 -0.784 6.722 C30 VS2 37
VS2 C31 C31 C 0 1 Y N N N N N 8.968 -14.903 10.522 -2.891 0.371 7.061 C31 VS2 38
VS2 C32 C32 C 0 1 Y N N N N N 8.851 -16.048 9.711 -3.378 0.535 8.344 C32 VS2 39
VS2 C33 C33 C 0 1 Y N N N N N 9.293 -16.021 8.378 -3.187 -0.456 9.288 C33 VS2 40
VS2 C34 C34 C 0 1 Y N N N N N 9.882 -14.857 7.868 -2.509 -1.612 8.949 C34 VS2 41
VS2 C35 C35 C 0 1 Y N N N N N 9.995 -13.710 8.689 -2.026 -1.778 7.665 C35 VS2 42
VS2 C27 C27 C 0 1 N N N N N N 5.941 -11.013 9.392 1.777 -0.174 3.149 C27 VS2 43
VS2 H21 1H2 H 0 1 N N N N N N 1.817 -11.977 -0.628 -3.572 -0.968 -6.708 H21 VS2 44
VS2 H31 1H3 H 0 1 N N N N N N -0.504 -11.398 -1.399 -3.848 -2.607 -8.525 H31 VS2 45
VS2 H41 1H4 H 0 1 N N N N N N -2.484 -12.055 -0.022 -1.917 -3.239 -9.916 H41 VS2 46
VS2 H51 1H5 H 0 1 N N N N N N -2.163 -13.315 2.109 0.288 -2.231 -9.491 H51 VS2 47
VS2 H61 1H6 H 0 1 N N N N N N 0.149 -13.905 2.897 0.563 -0.589 -7.677 H61 VS2 48
VS2 H71 1H7 H 0 1 N N N N N N 2.612 -13.989 2.445 -2.251 0.867 -5.824 H71 VS2 49
VS2 H72 2H7 H 0 1 N N N N N N 3.265 -13.439 0.984 -0.524 1.023 -6.227 H72 VS2 50
VS2 HN11 1HN1 H 0 0 N N N N N N 3.851 -9.903 3.212 -0.361 -1.281 -2.462 HN11 VS2 51
VS2 H91 1H9 H 0 1 N N N N N N 6.297 -11.013 4.412 0.147 1.435 -1.475 H91 VS2 52
VS2 H101 1H10 H 0 0 N N N N N N 4.932 -8.415 5.398 -1.947 -0.408 -0.237 H101 VS2 53
VS2 H102 2H10 H 0 0 N N N N N N 6.572 -8.811 5.542 -1.405 1.147 0.436 H102 VS2 54
VS2 H121 1H12 H 0 0 N N N N N N 4.487 -6.809 3.855 -3.308 -0.484 -2.246 H121 VS2 55
VS2 H131 1H13 H 0 0 N N N N N N 4.756 -5.766 1.602 -4.934 0.698 -3.668 H131 VS2 56
VS2 H141 1H14 H 0 0 N N N N N N 6.406 -6.695 -0.037 -5.097 3.153 -3.571 H141 VS2 57
VS2 H151 1H15 H 0 0 N N N N N N 7.780 -8.692 0.578 -3.636 4.425 -2.051 H151 VS2 58
VS2 H161 1H16 H 0 0 N N N N N N 7.526 -9.743 2.849 -2.013 3.242 -0.627 H161 VS2 59
VS2 HN21 1HN2 H 0 0 N N N N N N 6.750 -11.339 6.630 0.724 1.074 1.131 HN21 VS2 60
VS2 H181 1H18 H 0 0 N N N N N N 4.212 -11.573 8.281 2.005 -1.539 1.498 H181 VS2 61
VS2 H191 1H19 H 0 0 N N N N N N 6.707 -13.507 8.325 3.565 1.084 1.520 H191 VS2 62
VS2 H192 2H19 H 0 0 N N N N N N 5.447 -13.635 9.458 4.212 -0.512 1.970 H192 VS2 63
VS2 H201 1H20 H 0 0 N N N N N N 3.725 -13.977 7.492 3.720 -1.353 -0.309 H201 VS2 64
VS2 H202 2H20 H 0 0 N N N N N N 4.989 -13.867 6.370 3.073 0.242 -0.759 H202 VS2 65
VS2 H221 1H22 H 0 0 N N N N N N 3.978 -15.823 9.464 6.100 -1.675 0.044 H221 VS2 66
VS2 H231 1H23 H 0 0 N N N N N N 4.608 -18.227 9.834 8.375 -0.905 -0.496 H231 VS2 67
VS2 H241 1H24 H 0 0 N N N N N N 6.111 -19.389 8.194 8.738 1.391 -1.306 H241 VS2 68
VS2 H251 1H25 H 0 0 N N N N N N 6.942 -18.172 6.169 6.826 2.918 -1.575 H251 VS2 69
VS2 H261 1H26 H 0 0 N N N N N N 6.326 -15.772 5.813 4.550 2.147 -1.039 H261 VS2 70
VS2 H281 1H28 H 0 0 N N N N N N 7.867 -10.544 9.224 -0.356 -0.128 2.856 H281 VS2 71
VS2 H282 2H28 H 0 0 N N N N N N 7.468 -12.213 8.960 0.290 -1.724 3.306 H282 VS2 72
VS2 H291 1H29 H 0 0 N N N N N N 10.117 -11.651 10.439 -2.319 -0.426 4.621 H291 VS2 73
VS2 H292 2H29 H 0 0 N N N N N N 9.995 -12.616 11.850 -1.672 -2.022 5.071 H292 VS2 74
VS2 H311 1H31 H 0 0 N N N N N N 8.624 -14.942 11.569 -3.040 1.146 6.324 H311 VS2 75
VS2 H321 1H32 H 0 0 N N N N N N 8.410 -16.971 10.122 -3.908 1.438 8.610 H321 VS2 76
VS2 H331 1H33 H 0 0 N N N N N N 9.178 -16.909 7.734 -3.568 -0.328 10.291 H331 VS2 77
VS2 H341 1H34 H 0 0 N N N N N N 10.253 -14.843 6.829 -2.360 -2.386 9.686 H341 VS2 78
VS2 H351 1H35 H 0 0 N N N N N N 10.466 -12.799 8.283 -1.496 -2.681 7.400 H351 VS2 79
VS2 H271 1H27 H 0 0 N N N N N N 5.852 -9.913 9.228 2.497 -0.697 3.778 H271 VS2 80
VS2 H272 2H27 H 0 0 N N N N N N 5.327 -11.113 10.317 1.850 0.898 3.328 H272 VS2 81
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VS2 C1 C2 DOUB Y N 1
VS2 C1 C6 SING Y N 2
VS2 C1 C7 SING N N 3
VS2 C2 C3 SING Y N 4
VS2 C2 H21 SING N N 5
VS2 C3 C4 DOUB Y N 6
VS2 C3 H31 SING N N 7
VS2 C4 C5 SING Y N 8
VS2 C4 H41 SING N N 9
VS2 C5 C6 DOUB Y N 10
VS2 C5 H51 SING N N 11
VS2 C6 H61 SING N N 12
VS2 C7 O1 SING N N 13
VS2 C7 H71 SING N N 14
VS2 C7 H72 SING N N 15
VS2 O1 C8 SING N N 16
VS2 C8 O2 DOUB N N 17
VS2 C8 N1 SING N N 18
VS2 N1 C9 SING N N 19
VS2 N1 HN11 SING N N 20
VS2 C9 C10 SING N N 21
VS2 C9 C17 SING N N 22
VS2 C9 H91 SING N N 23
VS2 C10 C11 SING N N 24
VS2 C10 H101 SING N N 25
VS2 C10 H102 SING N N 26
VS2 C11 C12 DOUB Y N 27
VS2 C11 C16 SING Y N 28
VS2 C12 C13 SING Y N 29
VS2 C12 H121 SING N N 30
VS2 C13 C14 DOUB Y N 31
VS2 C13 H131 SING N N 32
VS2 C14 C15 SING Y N 33
VS2 C14 H141 SING N N 34
VS2 C15 C16 DOUB Y N 35
VS2 C15 H151 SING N N 36
VS2 C16 H161 SING N N 37
VS2 C17 O3 DOUB N N 38
VS2 C17 N2 SING N N 39
VS2 N2 C18 SING N N 40
VS2 N2 HN21 SING N N 41
VS2 C18 C19 SING N N 42
VS2 C18 C27 SING N N 43
VS2 C18 H181 SING N N 44
VS2 C19 C20 SING N N 45
VS2 C19 H191 SING N N 46
VS2 C19 H192 SING N N 47
VS2 C20 C21 SING N N 48
VS2 C20 H201 SING N N 49
VS2 C20 H202 SING N N 50
VS2 C21 C22 DOUB Y N 51
VS2 C21 C26 SING Y N 52
VS2 C22 C23 SING Y N 53
VS2 C22 H221 SING N N 54
VS2 C23 C24 DOUB Y N 55
VS2 C23 H231 SING N N 56
VS2 C24 C25 SING Y N 57
VS2 C24 H241 SING N N 58
VS2 C25 C26 DOUB Y N 59
VS2 C25 H251 SING N N 60
VS2 C26 H261 SING N N 61
VS2 C28 S1 SING N N 62
VS2 C28 C27 SING N N 63
VS2 C28 H281 SING N N 64
VS2 C28 H282 SING N N 65
VS2 S1 O4 DOUB N N 66
VS2 S1 O5 DOUB N N 67
VS2 S1 C29 SING N N 68
VS2 C29 C30 SING N N 69
VS2 C29 H291 SING N N 70
VS2 C29 H292 SING N N 71
VS2 C30 C31 DOUB Y N 72
VS2 C30 C35 SING Y N 73
VS2 C31 C32 SING Y N 74
VS2 C31 H311 SING N N 75
VS2 C32 C33 DOUB Y N 76
VS2 C32 H321 SING N N 77
VS2 C33 C34 SING Y N 78
VS2 C33 H331 SING N N 79
VS2 C34 C35 DOUB Y N 80
VS2 C34 H341 SING N N 81
VS2 C35 H351 SING N N 82
VS2 C27 H271 SING N N 83
VS2 C27 H272 SING N N 84
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VS2 SMILES ACDLabs 10.04 'O=S(=O)(Cc1ccccc1)CCC(NC(=O)C(NC(=O)OCc2ccccc2)Cc3ccccc3)CCc4ccccc4'
VS2 SMILES_CANONICAL CACTVS 3.341 'O=C(N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCc2ccccc2)CC[S](=O)(=O)Cc3ccccc3)OCc4ccccc4'
VS2 SMILES CACTVS 3.341 'O=C(N[CH](Cc1ccccc1)C(=O)N[CH](CCc2ccccc2)CC[S](=O)(=O)Cc3ccccc3)OCc4ccccc4'
VS2 SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'c1ccc(cc1)CC[C@@H](CCS(=O)(=O)Cc2ccccc2)NC(=O)[C@H](Cc3ccccc3)NC(=O)OCc4ccccc4'
VS2 SMILES 'OpenEye OEToolkits' 1.5.0 'c1ccc(cc1)CCC(CCS(=O)(=O)Cc2ccccc2)NC(=O)C(Cc3ccccc3)NC(=O)OCc4ccccc4'
VS2 InChI InChI 1.03 'InChI=1S/C35H38N2O5S/c38-34(33(25-29-15-7-2-8-16-29)37-35(39)42-26-30-17-9-3-10-18-30)36-32(22-21-28-13-5-1-6-14-28)23-24-43(40,41)27-31-19-11-4-12-20-31/h1-20,32-33H,21-27H2,(H,36,38)(H,37,39)/t32-,33-/m0/s1'
VS2 InChIKey InChI 1.03 VXIINIMESJGNGI-LQJZCPKCSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VS2 'SYSTEMATIC NAME' ACDLabs 10.04 'Nalpha-[(benzyloxy)carbonyl]-N-[(1S)-3-(benzylsulfonyl)-1-(2-phenylethyl)propyl]-L-phenylalaninamide'
VS2 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 'phenylmethyl N-[(2S)-1-oxo-3-phenyl-1-[[(3S)-1-phenyl-5-(phenylmethylsulfonyl)pentan-3-yl]amino]propan-2-yl]carbamate'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VS2 'Create component' 2000-06-09 RCSB
VS2 'Modify descriptor' 2011-06-04 RCSB
VS2 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id VS2
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C27
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id VS2
_pdbe_chem_comp_drugbank_details.drugbank_id DB02200
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'3-[N-[benzyloxycarbonyl]-phenylalaninyl-amino]-5-phenyl-pentane-1-sulfonylmethylbenzene'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id VS2
_pdbe_chem_comp_synonyms.name '3-[N-[benzyloxycarbonyl]-phenylalaninyl-amino]-5-phenyl-pentane-1-sulfonylmethylbenzene'
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id VS2
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02200
_pdbe_chem_comp_drugbank_classification.parent 'Phenylalanine and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as phenylalanine and derivatives. These are compounds containing phenylalanine or a derivative thereof resulting from reaction of phenylalanine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.'
#
_pdbe_chem_comp_drugbank_targets.comp_id VS2
_pdbe_chem_comp_drugbank_targets.drugbank_id DB02200
_pdbe_chem_comp_drugbank_targets.name Cruzipain
_pdbe_chem_comp_drugbank_targets.organism 'Trypanosoma cruzi'
_pdbe_chem_comp_drugbank_targets.uniprot_id P25779
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
VS2 C1 C 15.990 4.125 1
VS2 C2 C 17.290 3.375 2
VS2 C3 C 18.588 4.125 3
VS2 C4 C 18.588 5.625 4
VS2 C5 C 17.290 6.375 5
VS2 C6 C 15.990 5.625 6
VS2 C7 C 14.691 3.375 7
VS2 O1 O 13.392 4.125 8
VS2 C8 C 12.093 3.375 9
VS2 O2 O 12.093 1.875 10
VS2 N1 N 10.794 4.125 11
VS2 C9 C 9.495 3.375 12
VS2 C10 C 8.196 4.125 13
VS2 C11 C 8.196 5.625 14
VS2 C12 C 9.495 6.375 15
VS2 C13 C 9.495 7.875 16
VS2 C14 C 8.196 8.625 17
VS2 C15 C 6.897 7.875 18
VS2 C16 C 6.897 6.375 19
VS2 C17 C 9.495 1.875 20
VS2 O3 O 10.794 1.125 21
VS2 N2 N 8.196 1.125 22
VS2 C18 C 8.196 -0.375 23
VS2 C19 C 9.495 -1.125 24
VS2 C20 C 10.794 -0.375 25
VS2 C21 C 12.093 -1.125 26
VS2 C22 C 12.093 -2.625 27
VS2 C23 C 13.392 -3.375 28
VS2 C24 C 14.691 -2.625 29
VS2 C25 C 14.691 -1.125 30
VS2 C26 C 13.392 -0.375 31
VS2 C28 C 6.897 -2.625 32
VS2 S1 S 5.598 -3.375 33
VS2 O4 O 4.848 -2.076 34
VS2 O5 O 6.348 -4.674 35
VS2 C29 C 4.299 -4.125 36
VS2 C30 C 4.299 -5.625 37
VS2 C31 C 3.000 -6.375 38
VS2 C32 C 3.000 -7.875 39
VS2 C33 C 4.299 -8.625 40
VS2 C34 C 5.598 -7.875 41
VS2 C35 C 5.598 -6.375 42
VS2 C27 C 6.897 -1.125 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
VS2 C1 C2 DOUBLE NONE 1
VS2 C1 C6 SINGLE NONE 2
VS2 C1 C7 SINGLE NONE 3
VS2 C2 C3 SINGLE NONE 4
VS2 C3 C4 DOUBLE NONE 5
VS2 C4 C5 SINGLE NONE 6
VS2 C5 C6 DOUBLE NONE 7
VS2 C7 O1 SINGLE NONE 8
VS2 O1 C8 SINGLE NONE 9
VS2 C8 O2 DOUBLE NONE 10
VS2 C8 N1 SINGLE NONE 11
VS2 N1 C9 SINGLE NONE 12
VS2 C9 C10 SINGLE BEGINDASH 13
VS2 C9 C17 SINGLE NONE 14
VS2 C10 C11 SINGLE NONE 15
VS2 C11 C12 DOUBLE NONE 16
VS2 C11 C16 SINGLE NONE 17
VS2 C12 C13 SINGLE NONE 18
VS2 C13 C14 DOUBLE NONE 19
VS2 C14 C15 SINGLE NONE 20
VS2 C15 C16 DOUBLE NONE 21
VS2 C17 O3 DOUBLE NONE 22
VS2 C17 N2 SINGLE NONE 23
VS2 N2 C18 SINGLE NONE 24
VS2 C18 C19 SINGLE BEGINWEDGE 25
VS2 C18 C27 SINGLE NONE 26
VS2 C19 C20 SINGLE NONE 27
VS2 C20 C21 SINGLE NONE 28
VS2 C21 C22 DOUBLE NONE 29
VS2 C21 C26 SINGLE NONE 30
VS2 C22 C23 SINGLE NONE 31
VS2 C23 C24 DOUBLE NONE 32
VS2 C24 C25 SINGLE NONE 33
VS2 C25 C26 DOUBLE NONE 34
VS2 C28 S1 SINGLE NONE 35
VS2 C28 C27 SINGLE NONE 36
VS2 S1 O4 DOUBLE NONE 37
VS2 S1 O5 DOUBLE NONE 38
VS2 S1 C29 SINGLE NONE 39
VS2 C29 C30 SINGLE NONE 40
VS2 C30 C31 DOUBLE NONE 41
VS2 C30 C35 SINGLE NONE 42
VS2 C31 C32 SINGLE NONE 43
VS2 C32 C33 DOUBLE NONE 44
VS2 C33 C34 SINGLE NONE 45
VS2 C34 C35 DOUBLE NONE 46
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
VS2 MurckoScaffold S1 scaffold 'O=C(N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCc1ccccc1)CCS(=O)(=O)Cc1ccccc1)OCc1ccccc1' InChI=1S/C35H38N2O5S/c38-34(33(25-29-15-7-2-8-16-29)37-35(39)42-26-30-17-9-3-10-18-30)36-32(22-21-28-13-5-1-6-14-28)23-24-43(40,41)27-31-19-11-4-12-20-31/h1-20,32-33H,21-27H2,(H,36,38)(H,37,39)/t32-,33-/m0/s1 VXIINIMESJGNGI-LQJZCPKCSA-N
VS2 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
VS2 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
VS2 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
VS2 C1 S1 1
VS2 C2 S1 1
VS2 C3 S1 1
VS2 C4 S1 1
VS2 C5 S1 1
VS2 C6 S1 1
VS2 C7 S1 1
VS2 O1 S1 1
VS2 C8 S1 1
VS2 O2 S1 1
VS2 N1 S1 1
VS2 C9 S1 1
VS2 C10 S1 1
VS2 C11 S1 1
VS2 C12 S1 1
VS2 C13 S1 1
VS2 C14 S1 1
VS2 C15 S1 1
VS2 C16 S1 1
VS2 C17 S1 1
VS2 O3 S1 1
VS2 N2 S1 1
VS2 C18 S1 1
VS2 C19 S1 1
VS2 C20 S1 1
VS2 C21 S1 1
VS2 C22 S1 1
VS2 C23 S1 1
VS2 C24 S1 1
VS2 C25 S1 1
VS2 C26 S1 1
VS2 C28 S1 1
VS2 S1 S1 1
VS2 O4 S1 1
VS2 O5 S1 1
VS2 C29 S1 1
VS2 C30 S1 1
VS2 C31 S1 1
VS2 C32 S1 1
VS2 C33 S1 1
VS2 C34 S1 1
VS2 C35 S1 1
VS2 C27 S1 1
VS2 N2 F1 1
VS2 C17 F1 1
VS2 O3 F1 1
VS2 C9 F1 1
VS2 O3 F2 1
VS2 C17 F2 1
VS2 C9 F2 1
VS2 N1 F2 1
VS2 C1 F3 1
VS2 C2 F3 1
VS2 C3 F3 1
VS2 C4 F3 1
VS2 C5 F3 1
VS2 C6 F3 1
VS2 C11 F3 2
VS2 C12 F3 2
VS2 C13 F3 2
VS2 C14 F3 2
VS2 C15 F3 2
VS2 C16 F3 2
VS2 C21 F3 3
VS2 C22 F3 3
VS2 C23 F3 3
VS2 C24 F3 3
VS2 C25 F3 3
VS2 C26 F3 3
VS2 C30 F3 4
VS2 C31 F3 4
VS2 C32 F3 4
VS2 C33 F3 4
VS2 C34 F3 4
VS2 C35 F3 4
#
_pdbe_chem_comp_rdkit_properties.comp_id VS2
_pdbe_chem_comp_rdkit_properties.exactmw 598.250
_pdbe_chem_comp_rdkit_properties.amw 598.765
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 15
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 81
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.257
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 307.284
_pdbe_chem_comp_rdkit_properties.tpsa 101.570
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.428
_pdbe_chem_comp_rdkit_properties.CrippenMR 167.876
_pdbe_chem_comp_rdkit_properties.chi0v 21.660
_pdbe_chem_comp_rdkit_properties.chi1v 12.436
_pdbe_chem_comp_rdkit_properties.chi2v 4.793
_pdbe_chem_comp_rdkit_properties.chi3v 4.793
_pdbe_chem_comp_rdkit_properties.chi4v 2.975
_pdbe_chem_comp_rdkit_properties.chi0n 58.844
_pdbe_chem_comp_rdkit_properties.chi1n 29.847
_pdbe_chem_comp_rdkit_properties.chi2n 3.949
_pdbe_chem_comp_rdkit_properties.chi3n 3.949
_pdbe_chem_comp_rdkit_properties.chi4n 2.322
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.430
_pdbe_chem_comp_rdkit_properties.kappa1 8.599
_pdbe_chem_comp_rdkit_properties.kappa2 16.271
_pdbe_chem_comp_rdkit_properties.kappa3 11.401
_pdbe_chem_comp_rdkit_properties.Phi 3.254
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
VS2 UniChem DrugBank DB02200
VS2 UniChem ZINC ZINC000014880256
VS2 UniChem PubChem 5289560
VS2 UniChem 'Probes And Drugs' PD060107
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
VS2 C1 3.274 3.165 0.905 ETKDGv3 1
VS2 C2 4.569 3.158 1.269 ETKDGv3 2
VS2 C3 4.969 3.649 2.605 ETKDGv3 3
VS2 C4 4.043 4.100 3.459 ETKDGv3 4
VS2 C5 2.618 4.107 3.068 ETKDGv3 5
VS2 C6 2.252 3.662 1.860 ETKDGv3 6
VS2 C7 2.858 2.629 -0.434 ETKDGv3 7
VS2 O1 3.080 1.223 -0.466 ETKDGv3 8
VS2 C8 2.566 0.396 -1.467 ETKDGv3 9
VS2 O2 1.897 0.883 -2.419 ETKDGv3 10
VS2 N1 2.785 -1.016 -1.383 ETKDGv3 11
VS2 C9 1.894 -1.985 -2.024 ETKDGv3 12
VS2 C10 2.701 -3.180 -2.565 ETKDGv3 13
VS2 C11 3.639 -2.747 -3.662 ETKDGv3 14
VS2 C12 4.919 -2.430 -3.391 ETKDGv3 15
VS2 C13 5.815 -1.965 -4.471 ETKDGv3 16
VS2 C14 5.353 -1.846 -5.721 ETKDGv3 17
VS2 C15 3.946 -2.179 -6.024 ETKDGv3 18
VS2 C16 3.133 -2.604 -5.050 ETKDGv3 19
VS2 C17 0.851 -2.411 -1.022 ETKDGv3 20
VS2 O3 1.016 -3.459 -0.338 ETKDGv3 21
VS2 N2 -0.282 -1.566 -0.780 ETKDGv3 22
VS2 C18 -1.131 -1.711 0.409 ETKDGv3 23
VS2 C19 -0.370 -1.251 1.675 ETKDGv3 24
VS2 C20 0.096 0.214 1.614 ETKDGv3 25
VS2 C21 1.011 0.527 2.766 ETKDGv3 26
VS2 C22 0.539 1.097 3.890 ETKDGv3 27
VS2 C23 1.451 1.391 5.015 ETKDGv3 28
VS2 C24 2.750 1.081 4.924 ETKDGv3 29
VS2 C25 3.273 0.437 3.702 ETKDGv3 30
VS2 C26 2.449 0.168 2.682 ETKDGv3 31
VS2 C28 -3.345 -1.595 -0.841 ETKDGv3 32
VS2 S1 -4.850 -0.665 -1.088 ETKDGv3 33
VS2 O4 -5.634 -1.303 -2.200 ETKDGv3 34
VS2 O5 -4.511 0.748 -1.472 ETKDGv3 35
VS2 C29 -5.831 -0.662 0.405 ETKDGv3 36
VS2 C30 -7.164 -0.015 0.154 ETKDGv3 37
VS2 C31 -7.317 1.316 0.279 ETKDGv3 38
VS2 C32 -8.623 1.945 -0.005 ETKDGv3 39
VS2 C33 -9.658 1.194 -0.401 ETKDGv3 40
VS2 C34 -9.495 -0.266 -0.555 ETKDGv3 41
VS2 C35 -8.314 -0.840 -0.295 ETKDGv3 42
VS2 C27 -2.462 -0.949 0.233 ETKDGv3 43
VS2 H21 5.330 2.785 0.594 ETKDGv3 44
VS2 H31 6.012 3.638 2.891 ETKDGv3 45
VS2 H41 4.334 4.455 4.439 ETKDGv3 46
VS2 H51 1.871 4.462 3.766 ETKDGv3 47
VS2 H61 1.203 3.658 1.589 ETKDGv3 48
VS2 H71 1.781 2.844 -0.610 ETKDGv3 49
VS2 H72 3.448 3.118 -1.239 ETKDGv3 50
VS2 HN11 3.441 -1.360 -0.645 ETKDGv3 51
VS2 H91 1.370 -1.517 -2.886 ETKDGv3 52
VS2 H101 2.002 -3.944 -2.972 ETKDGv3 53
VS2 H102 3.270 -3.665 -1.740 ETKDGv3 54
VS2 H121 5.306 -2.503 -2.382 ETKDGv3 55
VS2 H131 6.844 -1.718 -4.246 ETKDGv3 56
VS2 H141 6.008 -1.504 -6.512 ETKDGv3 57
VS2 H151 3.575 -2.075 -7.036 ETKDGv3 58
VS2 H161 2.101 -2.840 -5.278 ETKDGv3 59
VS2 HN21 -0.449 -0.765 -1.432 ETKDGv3 60
VS2 H181 -1.377 -2.788 0.545 ETKDGv3 61
VS2 H191 0.514 -1.910 1.813 ETKDGv3 62
VS2 H192 -1.020 -1.390 2.567 ETKDGv3 63
VS2 H201 0.640 0.405 0.667 ETKDGv3 64
VS2 H202 -0.784 0.894 1.629 ETKDGv3 65
VS2 H221 -0.510 1.352 3.983 ETKDGv3 66
VS2 H231 1.067 1.862 5.910 ETKDGv3 67
VS2 H241 3.420 1.301 5.745 ETKDGv3 68
VS2 H251 4.322 0.182 3.635 ETKDGv3 69
VS2 H261 2.837 -0.313 1.793 ETKDGv3 70
VS2 H281 -2.801 -1.640 -1.808 ETKDGv3 71
VS2 H282 -3.612 -2.630 -0.538 ETKDGv3 72
VS2 H291 -5.974 -1.710 0.744 ETKDGv3 73
VS2 H292 -5.285 -0.120 1.205 ETKDGv3 74
VS2 H311 -6.486 1.941 0.584 ETKDGv3 75
VS2 H321 -8.740 3.016 0.105 ETKDGv3 76
VS2 H331 -10.615 1.654 -0.610 ETKDGv3 77
VS2 H341 -10.332 -0.869 -0.882 ETKDGv3 78
VS2 H351 -8.200 -1.910 -0.416 ETKDGv3 79
VS2 H271 -2.259 0.108 -0.046 ETKDGv3 80
VS2 H272 -3.013 -0.954 1.198 ETKDGv3 81
#