data_VOV
#
_chem_comp.id VOV
_chem_comp.name "harderoheme (III)"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C35 H34 Fe N4 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-03-12
_chem_comp.pdbx_modified_date 2019-07-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 662.513
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VOV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 6FXQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VOV C06 C1 C 0 1 N N N N N N -20.505 19.313 124.978 ? ? ? C06 VOV 1
VOV C07 C2 C 0 1 N N N N N N -19.428 19.440 124.090 ? ? ? C07 VOV 2
VOV C08 C3 C 0 1 N N N N N N -19.449 20.099 122.854 ? ? ? C08 VOV 3
VOV C09 C4 C 0 1 N N N N N N -18.165 19.945 122.304 ? ? ? C09 VOV 4
VOV C10 C5 C 0 1 N N N N N N -17.446 19.219 123.225 ? ? ? C10 VOV 5
VOV C11 C6 C 0 1 N N N N N N -20.643 20.833 122.251 ? ? ? C11 VOV 6
VOV C12 C7 C 0 1 N N N N N N -17.558 20.451 121.001 ? ? ? C12 VOV 7
VOV C13 C8 C 0 1 N N N N N N -17.462 22.002 121.024 ? ? ? C13 VOV 8
VOV C14 C9 C 0 1 N N N N N N -16.180 22.601 121.606 ? ? ? C14 VOV 9
VOV C17 C10 C 0 1 N N N N N N -16.145 18.823 123.024 ? ? ? C17 VOV 10
VOV C18 C11 C 0 1 N N N N N N -15.462 17.801 123.699 ? ? ? C18 VOV 11
VOV C19 C12 C 0 1 N N N N N N -14.276 17.176 123.266 ? ? ? C19 VOV 12
VOV C20 C13 C 0 1 N N N N N N -13.927 16.245 124.252 ? ? ? C20 VOV 13
VOV C21 C14 C 0 1 N N N N N N -14.899 16.392 125.248 ? ? ? C21 VOV 14
VOV C22 C15 C 0 1 N N N N N N -13.567 17.463 121.954 ? ? ? C22 VOV 15
VOV C23 C16 C 0 1 N N N N N N -12.728 15.322 124.299 ? ? ? C23 VOV 16
VOV C24 C17 C 0 1 N N N N N N -11.589 16.099 124.935 ? ? ? C24 VOV 17
VOV C25 C18 C 0 1 N N N N N N -10.231 15.453 125.157 ? ? ? C25 VOV 18
VOV C28 C19 C 0 1 N N N N N N -14.902 15.691 126.452 ? ? ? C28 VOV 19
VOV C29 C20 C 0 1 Y N N N N N -15.855 15.844 127.483 ? ? ? C29 VOV 20
VOV C30 C21 C 0 1 Y N N N N N -15.807 15.139 128.698 ? ? ? C30 VOV 21
VOV C31 C22 C 0 1 Y N N N N N -16.949 15.560 129.408 ? ? ? C31 VOV 22
VOV C32 C23 C 0 1 Y N N N N N -17.611 16.479 128.582 ? ? ? C32 VOV 23
VOV C33 C24 C 0 1 N N N N N N -17.493 15.186 130.801 ? ? ? C33 VOV 24
VOV C34 C25 C 0 1 N N N N N N -14.680 14.161 129.096 ? ? ? C34 VOV 25
VOV C35 C26 C 0 1 N N N N N N -15.110 13.031 130.038 ? ? ? C35 VOV 26
VOV C36 C27 C 0 1 N N N N N N -15.923 11.975 129.314 ? ? ? C36 VOV 27
VOV C39 C28 C 0 1 N N N N N N -18.824 17.081 128.925 ? ? ? C39 VOV 28
VOV C40 C29 C 0 1 N N N N N N -19.696 17.701 128.014 ? ? ? C40 VOV 29
VOV C41 C30 C 0 1 N N N N N N -21.054 17.981 128.274 ? ? ? C41 VOV 30
VOV C42 C31 C 0 1 N N N N N N -21.537 18.631 127.103 ? ? ? C42 VOV 31
VOV C43 C32 C 0 1 N N N N N N -20.446 18.701 126.228 ? ? ? C43 VOV 32
VOV C44 C33 C 0 1 N N N N N N -21.822 17.644 129.555 ? ? ? C44 VOV 33
VOV C45 C34 C 0 1 N N N N N N -22.942 19.175 126.831 ? ? ? C45 VOV 34
VOV C46 C35 C 0 1 N N N N N N -24.076 18.579 126.416 ? ? ? C46 VOV 35
VOV N02 N1 N 0 1 N N S N N N -18.188 18.891 124.333 ? ? ? N02 VOV 36
VOV N03 N2 N 0 1 N N N N N N -15.853 17.328 124.922 ? ? ? N03 VOV 37
VOV N04 N3 N 0 1 Y N N N N N -16.959 16.667 127.386 ? ? ? N04 VOV 38
VOV N05 N4 N 0 1 N N N N N N -19.307 18.128 126.762 ? ? ? N05 VOV 39
VOV O15 O1 O 0 1 N N N N N N -15.397 21.747 122.063 ? ? ? O15 VOV 40
VOV O16 O2 O 0 1 N N N N N N -15.955 23.845 121.593 ? ? ? O16 VOV 41
VOV O26 O3 O 0 1 N N N N N N -10.081 14.251 125.550 ? ? ? O26 VOV 42
VOV O27 O4 O 0 1 N N N N N N -9.326 16.258 124.885 ? ? ? O27 VOV 43
VOV O37 O5 O 0 1 N N N N N N -17.079 12.309 128.976 ? ? ? O37 VOV 44
VOV O38 O6 O 0 1 N N N N N N -15.354 10.889 129.098 ? ? ? O38 VOV 45
VOV FE FE1 FE 0 0 N N N N N N -17.499 17.919 125.919 ? ? ? FE01 VOV 46
VOV H061 H1 H 0 0 N N N N N N -21.456 19.722 124.669 ? ? ? H061 VOV 47
VOV H112 H2 H 0 0 N N N N N N -21.500 20.766 122.938 ? ? ? H112 VOV 48
VOV H111 H3 H 0 0 N N N N N N -20.382 21.890 122.092 ? ? ? H111 VOV 49
VOV H113 H4 H 0 0 N N N N N N -20.908 20.372 121.288 ? ? ? H113 VOV 50
VOV H122 H5 H 0 0 N N N N N N -18.192 20.138 120.158 ? ? ? H122 VOV 51
VOV H121 H6 H 0 0 N N N N N N -16.551 20.026 120.879 ? ? ? H121 VOV 52
VOV H132 H7 H 0 0 N N N N N N -17.556 22.357 119.987 ? ? ? H132 VOV 53
VOV H131 H8 H 0 0 N N N N N N -18.307 22.380 121.619 ? ? ? H131 VOV 54
VOV H171 H9 H 0 0 N N N N N N -15.590 19.355 122.266 ? ? ? H171 VOV 55
VOV H222 H10 H 0 0 N N N N N N -12.669 16.833 121.876 ? ? ? H222 VOV 56
VOV H223 H11 H 0 0 N N N N N N -14.244 17.242 121.116 ? ? ? H223 VOV 57
VOV H221 H12 H 0 0 N N N N N N -13.275 18.523 121.919 ? ? ? H221 VOV 58
VOV H232 H13 H 0 0 N N N N N N -12.961 14.432 124.902 ? ? ? H232 VOV 59
VOV H231 H14 H 0 0 N N N N N N -12.451 15.012 123.281 ? ? ? H231 VOV 60
VOV H242 H15 H 0 0 N N N N N N -11.417 16.979 124.298 ? ? ? H242 VOV 61
VOV H241 H16 H 0 0 N N N N N N -11.946 16.425 125.923 ? ? ? H241 VOV 62
VOV H281 H17 H 0 0 N N N N N N -14.111 14.972 126.610 ? ? ? H281 VOV 63
VOV H331 H18 H 0 0 N N N N N N -18.170 14.324 130.711 ? ? ? H331 VOV 64
VOV H332 H19 H 0 0 N N N N N N -16.655 14.927 131.464 ? ? ? H332 VOV 65
VOV H333 H20 H 0 0 N N N N N N -18.042 16.041 131.222 ? ? ? H333 VOV 66
VOV H341 H21 H 0 0 N N N N N N -14.281 13.707 128.177 ? ? ? H341 VOV 67
VOV H342 H22 H 0 0 N N N N N N -13.887 14.738 129.594 ? ? ? H342 VOV 68
VOV H352 H23 H 0 0 N N N N N N -14.211 12.560 130.463 ? ? ? H352 VOV 69
VOV H351 H24 H 0 0 N N N N N N -15.719 13.456 130.849 ? ? ? H351 VOV 70
VOV H391 H25 H 0 0 N N N N N N -19.113 17.069 129.966 ? ? ? H391 VOV 71
VOV H441 H26 H 0 0 N N N N N N -21.149 17.140 130.265 ? ? ? H441 VOV 72
VOV H442 H27 H 0 0 N N N N N N -22.205 18.571 130.007 ? ? ? H442 VOV 73
VOV H443 H28 H 0 0 N N N N N N -22.664 16.979 129.313 ? ? ? H443 VOV 74
VOV H451 H29 H 0 0 N N N N N N -23.043 20.236 127.005 ? ? ? H451 VOV 75
VOV H462 H30 H 0 0 N N N N N N -24.976 19.162 126.286 ? ? ? H462 VOV 76
VOV H461 H31 H 0 0 N N N N N N -24.086 17.518 126.213 ? ? ? H461 VOV 77
VOV H1 H32 H 0 1 N N N N N N -14.617 22.177 122.394 ? ? ? H1 VOV 78
VOV H2 H33 H 0 1 N N N N N N -9.154 14.050 125.608 ? ? ? H2 VOV 79
VOV H3 H34 H 0 1 N N N N N N -15.939 10.314 128.618 ? ? ? H3 VOV 80
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VOV C12 C13 SING N N 1
VOV C12 C09 SING N N 2
VOV C13 C14 SING N N 3
VOV O16 C14 DOUB N N 4
VOV C14 O15 SING N N 5
VOV C22 C19 SING N N 6
VOV C11 C08 SING N N 7
VOV C09 C08 DOUB N N 8
VOV C09 C10 SING N N 9
VOV C08 C07 SING N N 10
VOV C17 C10 DOUB N N 11
VOV C17 C18 SING N N 12
VOV C10 N02 SING N N 13
VOV C19 C18 SING N N 14
VOV C19 C20 DOUB N N 15
VOV C18 N03 DOUB N N 16
VOV C07 N02 SING N N 17
VOV C07 C06 DOUB N N 18
VOV C20 C23 SING N N 19
VOV C20 C21 SING N N 20
VOV C23 C24 SING N N 21
VOV N02 FE SING N N 22
VOV O27 C25 DOUB N N 23
VOV N03 C21 SING N N 24
VOV N03 FE SING N N 25
VOV C24 C25 SING N N 26
VOV C06 C43 SING N N 27
VOV C25 O26 SING N N 28
VOV C21 C28 DOUB N N 29
VOV FE N05 SING N N 30
VOV FE N04 SING N N 31
VOV C43 N05 DOUB N N 32
VOV C43 C42 SING N N 33
VOV C46 C45 DOUB N N 34
VOV C28 C29 SING N N 35
VOV N05 C40 SING N N 36
VOV C45 C42 SING N N 37
VOV C42 C41 DOUB N N 38
VOV N04 C29 SING Y N 39
VOV N04 C32 SING Y N 40
VOV C29 C30 DOUB Y N 41
VOV C40 C41 SING N N 42
VOV C40 C39 DOUB N N 43
VOV C41 C44 SING N N 44
VOV C32 C39 SING N N 45
VOV C32 C31 DOUB Y N 46
VOV C30 C34 SING N N 47
VOV C30 C31 SING Y N 48
VOV O37 C36 DOUB N N 49
VOV C34 C35 SING N N 50
VOV O38 C36 SING N N 51
VOV C36 C35 SING N N 52
VOV C31 C33 SING N N 53
VOV C06 H061 SING N N 54
VOV C11 H112 SING N N 55
VOV C11 H111 SING N N 56
VOV C11 H113 SING N N 57
VOV C12 H122 SING N N 58
VOV C12 H121 SING N N 59
VOV C13 H132 SING N N 60
VOV C13 H131 SING N N 61
VOV C17 H171 SING N N 62
VOV C22 H222 SING N N 63
VOV C22 H223 SING N N 64
VOV C22 H221 SING N N 65
VOV C23 H232 SING N N 66
VOV C23 H231 SING N N 67
VOV C24 H242 SING N N 68
VOV C24 H241 SING N N 69
VOV C28 H281 SING N N 70
VOV C33 H331 SING N N 71
VOV C33 H332 SING N N 72
VOV C33 H333 SING N N 73
VOV C34 H341 SING N N 74
VOV C34 H342 SING N N 75
VOV C35 H352 SING N N 76
VOV C35 H351 SING N N 77
VOV C39 H391 SING N N 78
VOV C44 H441 SING N N 79
VOV C44 H442 SING N N 80
VOV C44 H443 SING N N 81
VOV C45 H451 SING N N 82
VOV C46 H462 SING N N 83
VOV C46 H461 SING N N 84
VOV O15 H1 SING N N 85
VOV O26 H2 SING N N 86
VOV O38 H3 SING N N 87
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VOV InChI InChI 1.03 InChI=1S/C35H36N4O6.Fe/c1-6-21-17(2)25-13-26-18(3)23(8-11-34(42)43)31(37-26)16-32-24(9-12-35(44)45)20(5)28(39-32)15-30-22(7-10-33(40)41)19(4)27(38-30)14-29(21)36-25;/h6,13-16H,1,7-12H2,2-5H3,(H5,36,37,38,39,40,41,42,43,44,45);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;
VOV InChIKey InChI 1.03 WHUQBNXBFVNCIJ-RGGAHWMASA-L
VOV SMILES_CANONICAL CACTVS 3.385 CC1=C(CCC(O)=O)C2=Cc3n4[Fe][N@]5C(=CC6=NC(=Cc4c(C)c3CCC(O)=O)C(=C6C=C)C)C(=C(CCC(O)=O)C5=CC1=N2)C
VOV SMILES CACTVS 3.385 CC1=C(CCC(O)=O)C2=Cc3n4[Fe][N]5C(=CC6=NC(=Cc4c(C)c3CCC(O)=O)C(=C6C=C)C)C(=C(CCC(O)=O)C5=CC1=N2)C
VOV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)CCC(=O)O)C(=C(C7=C2)C)C=C)C)CCC(=O)O
VOV SMILES "OpenEye OEToolkits" 2.0.6 Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)CCC(=O)O)C(=C(C7=C2)C)C=C)C)CCC(=O)O
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VOV 'Create component' 2018-03-12 RCSB
VOV 'Initial release' 2019-07-10 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
VOV C06 C -3.758 0.000 1
VOV C07 C -2.999 1.291 2
VOV C08 C -3.682 2.657 3
VOV C09 C -2.619 3.720 4
VOV C10 C -1.291 3.037 5
VOV C11 C -5.167 2.892 6
VOV C12 C -2.848 5.197 7
VOV C13 C -1.678 6.137 8
VOV C14 C -1.907 7.619 9
VOV C17 C 0.000 3.796 10
VOV C18 C 1.329 3.037 11
VOV C19 C 2.658 3.720 12
VOV C20 C 3.758 2.657 13
VOV C21 C 3.037 1.291 14
VOV C22 C 2.886 5.197 15
VOV C23 C 5.265 2.923 16
VOV C24 C 5.779 4.333 17
VOV C25 C 7.256 4.593 18
VOV C28 C 3.796 0.000 19
VOV C29 C 3.037 -1.291 20
VOV C30 C 3.758 -2.657 21
VOV C31 C 2.658 -3.720 22
VOV C32 C 1.329 -3.037 23
VOV C33 C 2.871 -5.236 24
VOV C34 C 5.288 -2.877 25
VOV C35 C 5.846 -4.269 26
VOV C36 C 7.331 -4.483 27
VOV C39 C 0.000 -3.796 28
VOV C40 C -1.291 -3.037 29
VOV C41 C -2.619 -3.720 30
VOV C42 C -3.682 -2.657 31
VOV C43 C -2.999 -1.291 32
VOV C44 C -2.855 -5.205 33
VOV C45 C -5.190 -2.908 34
VOV C46 C -6.142 -1.749 35
VOV N02 N -1.518 1.556 36
VOV N03 N 1.556 1.556 37
VOV N04 N 1.556 -1.556 38
VOV N05 N -1.518 -1.556 39
VOV O15 O -0.738 8.559 40
VOV O16 O -3.306 8.162 41
VOV O26 O 7.769 6.002 42
VOV O27 O 8.220 3.444 43
VOV O37 O 8.258 -3.303 44
VOV O38 O 7.888 -5.875 45
VOV FE Fe 0.000 0.000 46
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
VOV C12 C13 SINGLE NONE 1
VOV C12 C09 SINGLE NONE 2
VOV C13 C14 SINGLE NONE 3
VOV O16 C14 DOUBLE NONE 4
VOV C14 O15 SINGLE NONE 5
VOV C22 C19 SINGLE NONE 6
VOV C11 C08 SINGLE NONE 7
VOV C09 C08 DOUBLE NONE 8
VOV C09 C10 SINGLE ENDDOWNRIGHT 9
VOV C08 C07 SINGLE ENDUPRIGHT 10
VOV C17 C10 DOUBLE NONE 11
VOV C17 C18 SINGLE ENDDOWNRIGHT 12
VOV C10 N02 SINGLE ENDDOWNRIGHT 13
VOV C19 C18 SINGLE NONE 14
VOV C19 C20 DOUBLE NONE 15
VOV C18 N03 DOUBLE NONE 16
VOV C07 N02 SINGLE ENDUPRIGHT 17
VOV C07 C06 DOUBLE NONE 18
VOV C20 C23 SINGLE NONE 19
VOV C20 C21 SINGLE ENDUPRIGHT 20
VOV C23 C24 SINGLE NONE 21
VOV N02 FE SINGLE NONE 22
VOV O27 C25 DOUBLE NONE 23
VOV N03 C21 SINGLE ENDDOWNRIGHT 24
VOV N03 FE DATIVE NONE 25
VOV C24 C25 SINGLE NONE 26
VOV C06 C43 SINGLE ENDUPRIGHT 27
VOV C25 O26 SINGLE NONE 28
VOV C21 C28 DOUBLE NONE 29
VOV N05 FE DATIVE NONE 30
VOV FE N04 SINGLE NONE 31
VOV C43 N05 DOUBLE NONE 32
VOV C43 C42 SINGLE NONE 33
VOV C46 C45 DOUBLE NONE 34
VOV C28 C29 SINGLE ENDUPRIGHT 35
VOV N05 C40 SINGLE ENDUPRIGHT 36
VOV C45 C42 SINGLE NONE 37
VOV C42 C41 DOUBLE NONE 38
VOV N04 C29 SINGLE NONE 39
VOV N04 C32 SINGLE NONE 40
VOV C29 C30 DOUBLE NONE 41
VOV C40 C41 SINGLE ENDUPRIGHT 42
VOV C40 C39 DOUBLE NONE 43
VOV C41 C44 SINGLE NONE 44
VOV C32 C39 SINGLE ENDUPRIGHT 45
VOV C32 C31 DOUBLE NONE 46
VOV C30 C34 SINGLE NONE 47
VOV C30 C31 SINGLE NONE 48
VOV O37 C36 DOUBLE NONE 49
VOV C34 C35 SINGLE NONE 50
VOV O38 C36 SINGLE NONE 51
VOV C36 C35 SINGLE NONE 52
VOV C31 C33 SINGLE NONE 53
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
VOV MurckoScaffold S1 scaffold 'C1=C/C2=C/c3ccc4[n]3[Fe@SP2]35<-[N]2=C1/C=c1/cc/c([n]13)=C/C1=[N]->5/C(=C\4)C=C1' 'InChI=1S/C20H12N4.Fe/c1-2-14-10-16-5-6-18(23-16)12-20-8-7-19(24-20)11-17-4-3-15(22-17)9-13(1)21-14;/h1-12H;/q-2;+2/b13-9-,14-10-,15-9?,16-10?,17-11-,18-12-,19-11?,20-12?;' XVFTZEQSXCJEIQ-GPJYPRJCSA-N
VOV porphin-like F1 fragment C1~C~C2~C~C3~C~C~C(~C~C4~C~C~C(~C~C5~C~C~C(~C~C~1~N~2)~N~5)~N~4)~N~3 ? ?
VOV pyrrole F2 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
VOV C06 S1 1
VOV C07 S1 1
VOV C08 S1 1
VOV C09 S1 1
VOV C10 S1 1
VOV C17 S1 1
VOV C18 S1 1
VOV C19 S1 1
VOV C20 S1 1
VOV C21 S1 1
VOV C28 S1 1
VOV C29 S1 1
VOV C30 S1 1
VOV C31 S1 1
VOV C32 S1 1
VOV C39 S1 1
VOV C40 S1 1
VOV C41 S1 1
VOV C42 S1 1
VOV C43 S1 1
VOV N02 S1 1
VOV N03 S1 1
VOV N04 S1 1
VOV N05 S1 1
VOV FE S1 1
VOV C08 F1 1
VOV C09 F1 1
VOV C10 F1 1
VOV C17 F1 1
VOV C18 F1 1
VOV N03 F1 1
VOV C21 F1 1
VOV C20 F1 1
VOV C19 F1 1
VOV C28 F1 1
VOV C29 F1 1
VOV N04 F1 1
VOV C32 F1 1
VOV C39 F1 1
VOV C40 F1 1
VOV N05 F1 1
VOV C43 F1 1
VOV C06 F1 1
VOV C07 F1 1
VOV N02 F1 1
VOV C42 F1 1
VOV C41 F1 1
VOV C31 F1 1
VOV C30 F1 1
VOV C07 F2 1
VOV C08 F2 1
VOV C09 F2 1
VOV C10 F2 1
VOV N02 F2 1
VOV C29 F2 2
VOV C30 F2 2
VOV C31 F2 2
VOV C32 F2 2
VOV N04 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id VOV
_pdbe_chem_comp_rdkit_properties.exactmw 662.183
_pdbe_chem_comp_rdkit_properties.amw 662.524
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 46
_pdbe_chem_comp_rdkit_properties.NumAtoms 80
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.286
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 6
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 6
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 315.244
_pdbe_chem_comp_rdkit_properties.tpsa 133.560
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.584
_pdbe_chem_comp_rdkit_properties.CrippenMR 171.138
_pdbe_chem_comp_rdkit_properties.chi0v 23.196
_pdbe_chem_comp_rdkit_properties.chi1v 14.371
_pdbe_chem_comp_rdkit_properties.chi2v 11.836
_pdbe_chem_comp_rdkit_properties.chi3v 11.836
_pdbe_chem_comp_rdkit_properties.chi4v 11.045
_pdbe_chem_comp_rdkit_properties.chi0n 56.092
_pdbe_chem_comp_rdkit_properties.chi1n 29.121
_pdbe_chem_comp_rdkit_properties.chi2n 7.211
_pdbe_chem_comp_rdkit_properties.chi3n 7.211
_pdbe_chem_comp_rdkit_properties.chi4n 5.588
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.731
_pdbe_chem_comp_rdkit_properties.kappa1 9.888
_pdbe_chem_comp_rdkit_properties.kappa2 9.402
_pdbe_chem_comp_rdkit_properties.kappa3 3.287
_pdbe_chem_comp_rdkit_properties.Phi 2.021
#
_pdbe_chem_comp_external_mappings.comp_id VOV
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource BRENDA
_pdbe_chem_comp_external_mappings.resource_id 228484
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
VOV C06 -3.008 -2.327 1.355 ETKDGv3 1
VOV C07 -3.216 -1.064 1.000 ETKDGv3 2
VOV C08 -4.509 -0.367 1.042 ETKDGv3 3
VOV C09 -4.303 0.905 0.688 ETKDGv3 4
VOV C10 -2.878 1.046 0.336 ETKDGv3 5
VOV C11 -5.808 -0.965 1.509 ETKDGv3 6
VOV C12 -5.360 1.983 0.600 ETKDGv3 7
VOV C13 -6.120 1.934 -0.732 ETKDGv3 8
VOV C14 -5.246 2.316 -1.886 ETKDGv3 9
VOV C17 -2.310 2.131 -0.180 ETKDGv3 10
VOV C18 -0.917 2.205 -0.646 ETKDGv3 11
VOV C19 -0.365 3.411 -1.283 ETKDGv3 12
VOV C20 0.868 3.127 -1.686 ETKDGv3 13
VOV C21 1.124 1.752 -1.251 ETKDGv3 14
VOV C22 -1.113 4.692 -1.528 ETKDGv3 15
VOV C23 1.804 4.053 -2.428 ETKDGv3 16
VOV C24 2.547 4.999 -1.477 ETKDGv3 17
VOV C25 3.609 4.285 -0.700 ETKDGv3 18
VOV C28 2.285 1.112 -1.404 ETKDGv3 19
VOV C29 2.538 -0.255 -0.941 ETKDGv3 20
VOV C30 3.705 -0.897 -1.048 ETKDGv3 21
VOV C31 3.534 -2.203 -0.404 ETKDGv3 22
VOV C32 2.272 -2.270 0.016 ETKDGv3 23
VOV C33 4.568 -3.284 -0.265 ETKDGv3 24
VOV C34 4.991 -0.342 -1.615 ETKDGv3 25
VOV C35 5.725 0.539 -0.597 ETKDGv3 26
VOV C36 6.259 -0.267 0.547 ETKDGv3 27
VOV C39 1.676 -3.429 0.683 ETKDGv3 28
VOV C40 0.405 -3.490 1.077 ETKDGv3 29
VOV C41 -0.205 -4.653 1.715 ETKDGv3 30
VOV C42 -1.478 -4.342 1.913 ETKDGv3 31
VOV C43 -1.687 -2.975 1.394 ETKDGv3 32
VOV C44 0.471 -5.953 2.054 ETKDGv3 33
VOV C45 -2.477 -5.230 2.543 ETKDGv3 34
VOV C46 -3.319 -4.800 3.478 ETKDGv3 35
VOV N02 -2.203 -0.179 0.559 ETKDGv3 36
VOV N03 -0.051 1.233 -0.619 ETKDGv3 37
VOV N04 1.576 -1.069 -0.285 ETKDGv3 38
VOV N05 -0.584 -2.468 0.918 ETKDGv3 39
VOV O15 -5.003 3.659 -2.156 ETKDGv3 40
VOV O16 -4.703 1.424 -2.590 ETKDGv3 41
VOV O26 4.885 4.152 -1.237 ETKDGv3 42
VOV O27 3.341 3.784 0.424 ETKDGv3 43
VOV O37 7.381 -0.831 0.453 ETKDGv3 44
VOV O38 5.493 -0.427 1.698 ETKDGv3 45
VOV FE -0.316 -0.622 0.140 ETKDGv3 46
VOV H061 -3.861 -2.915 1.657 ETKDGv3 47
VOV H112 -5.930 -1.983 1.086 ETKDGv3 48
VOV H111 -5.808 -1.026 2.617 ETKDGv3 49
VOV H113 -6.681 -0.367 1.179 ETKDGv3 50
VOV H122 -4.907 2.987 0.743 ETKDGv3 51
VOV H121 -6.082 1.861 1.434 ETKDGv3 52
VOV H132 -6.973 2.645 -0.684 ETKDGv3 53
VOV H131 -6.543 0.919 -0.898 ETKDGv3 54
VOV H171 -2.920 3.010 -0.320 ETKDGv3 55
VOV H222 -1.817 4.552 -2.373 ETKDGv3 56
VOV H223 -1.682 4.976 -0.619 ETKDGv3 57
VOV H221 -0.429 5.532 -1.762 ETKDGv3 58
VOV H232 2.529 3.475 -3.040 ETKDGv3 59
VOV H231 1.220 4.657 -3.155 ETKDGv3 60
VOV H242 3.029 5.802 -2.076 ETKDGv3 61
VOV H241 1.834 5.489 -0.779 ETKDGv3 62
VOV H281 3.098 1.638 -1.879 ETKDGv3 63
VOV H331 5.569 -2.937 -0.584 ETKDGv3 64
VOV H332 4.279 -4.157 -0.888 ETKDGv3 65
VOV H333 4.643 -3.598 0.797 ETKDGv3 66
VOV H341 4.771 0.256 -2.524 ETKDGv3 67
VOV H342 5.654 -1.163 -1.956 ETKDGv3 68
VOV H352 6.570 1.052 -1.105 ETKDGv3 69
VOV H351 5.041 1.322 -0.208 ETKDGv3 70
VOV H391 2.306 -4.293 0.847 ETKDGv3 71
VOV H441 0.603 -6.552 1.129 ETKDGv3 72
VOV H442 1.464 -5.755 2.507 ETKDGv3 73
VOV H443 -0.119 -6.540 2.787 ETKDGv3 74
VOV H451 -2.469 -6.285 2.298 ETKDGv3 75
VOV H462 -3.308 -3.771 3.816 ETKDGv3 76
VOV H461 -4.011 -5.491 3.941 ETKDGv3 77
VOV H1 -4.397 3.933 -2.920 ETKDGv3 78
VOV H2 5.620 3.683 -0.722 ETKDGv3 79
VOV H3 5.829 -0.989 2.471 ETKDGv3 80
#