data_V68
#
_chem_comp.id V68
_chem_comp.name 1-[(1-methylpiperidin-4-yl)methyl]-3-[6-(2-methylpropoxy)naphthalen-2-yl]pyrazolo[3,4-d]pyrimidin-4-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H32 N6 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-03-04
_chem_comp.pdbx_modified_date 2014-03-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 444.572
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code V68
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4JBV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V68 CAL CAL C 0 1 N N N N N N 17.705 18.757 62.128 -4.726 -1.700 0.128 CAL V68 1
V68 CAN CAN C 0 1 N N N N N N 18.366 20.020 61.572 -5.584 -2.466 -0.881 CAN V68 2
V68 NBF NBF N 0 1 N N N N N N 19.564 19.656 60.806 -6.928 -2.671 -0.326 NBF V68 3
V68 CAC CAC C 0 1 N N N N N N 20.335 20.870 60.483 -7.738 -3.522 -1.208 CAC V68 4
V68 CAO CAO C 0 1 N N N N N N 19.108 18.980 59.586 -7.599 -1.390 -0.069 CAO V68 5
V68 CAM CAM C 0 1 N N N N N N 18.452 17.639 59.939 -6.800 -0.593 0.965 CAM V68 6
V68 CBE CBE C 0 1 N N N N N N 17.404 17.681 61.074 -5.383 -0.352 0.433 CBE V68 7
V68 CAQ CAQ C 0 1 N N N N N N 17.519 16.334 61.774 -4.562 0.392 1.488 CAQ V68 8
V68 NBG NBG N 0 1 Y N N N N N 16.298 15.590 62.140 -3.247 0.728 0.935 NBG V68 9
V68 NAT NAT N 0 1 Y N N N N N 15.170 16.011 62.441 -2.110 -0.084 1.005 NAT V68 10
V68 C4 C4 C 0 1 Y N N N N N 16.378 14.277 62.214 -2.943 1.877 0.269 C4 V68 11
V68 N3 N3 N 0 1 Y N N N N N 17.393 13.438 61.984 -3.631 2.966 -0.078 N3 V68 12
V68 C2 C2 C 0 1 Y N N N N N 17.209 12.132 62.124 -3.051 3.943 -0.739 C2 V68 13
V68 N1 N1 N 0 1 Y N N N N N 16.035 11.624 62.485 -1.779 3.909 -1.094 N1 V68 14
V68 C6 C6 C 0 1 Y N N N N N 14.976 12.419 62.735 -1.010 2.866 -0.794 C6 V68 15
V68 NAD NAD N 0 1 N N N N N N 13.823 11.841 63.081 0.319 2.836 -1.168 NAD V68 16
V68 C5 C5 C 0 1 Y N N N N N 15.132 13.806 62.599 -1.584 1.796 -0.088 C5 V68 17
V68 CAY CAY C 0 1 Y N N N N N 14.375 14.973 62.743 -1.101 0.510 0.413 CAY V68 18
V68 CAW CAW C 0 1 Y N N N N N 13.023 15.007 63.118 0.275 -0.025 0.275 CAW V68 19
V68 CAK CAK C 0 1 Y N N N N N 12.558 14.285 64.219 1.358 0.798 0.520 CAK V68 20
V68 CAF CAF C 0 1 Y N N N N N 12.126 15.794 62.390 0.466 -1.366 -0.098 CAF V68 21
V68 CAH CAH C 0 1 Y N N N N N 10.778 15.856 62.749 1.716 -1.880 -0.230 CAH V68 22
V68 CAZ CAZ C 0 1 Y N N N N N 10.315 15.124 63.835 2.840 -1.067 0.007 CAZ V68 23
V68 CAJ CAJ C 0 1 Y N N N N N 8.966 15.181 64.192 4.141 -1.578 -0.123 CAJ V68 24
V68 CBA CBA C 0 1 Y N N N N N 11.207 14.345 64.576 2.658 0.287 0.388 CBA V68 25
V68 CAG CAG C 0 1 Y N N N N N 10.735 13.622 65.664 3.783 1.095 0.630 CAG V68 26
V68 CAE CAE C 0 1 Y N N N N N 9.390 13.668 66.014 5.033 0.576 0.497 CAE V68 27
V68 CAV CAV C 0 1 Y N N N N N 8.495 14.444 65.280 5.220 -0.757 0.116 CAV V68 28
V68 OAU OAU O 0 1 N N N N N N 7.175 14.456 65.656 6.480 -1.249 -0.009 OAU V68 29
V68 CAP CAP C 0 1 N N N N N N 6.242 14.959 64.674 7.557 -0.348 0.252 CAP V68 30
V68 CBD CBD C 0 1 N N N N N N 4.839 14.420 65.006 8.889 -1.077 0.062 CBD V68 31
V68 CAB CAB C 0 1 N N N N N N 4.553 14.479 66.515 9.045 -1.479 -1.406 CAB V68 32
V68 CAA CAA C 0 1 N N N N N N 3.753 15.153 64.207 10.039 -0.150 0.461 CAA V68 33
V68 H1 H1 H 0 1 N N N N N N 16.757 19.046 62.605 -4.641 -2.280 1.048 H1 V68 34
V68 H2 H2 H 0 1 N N N N N N 18.376 18.321 62.882 -3.733 -1.535 -0.290 H2 V68 35
V68 H3 H3 H 0 1 N N N N N N 18.651 20.680 62.404 -5.657 -1.892 -1.805 H3 V68 36
V68 H4 H4 H 0 1 N N N N N N 17.657 20.544 60.914 -5.126 -3.432 -1.089 H4 V68 37
V68 H6 H6 H 0 1 N N N N N N 20.663 21.355 61.414 -7.254 -4.492 -1.321 H6 V68 38
V68 H7 H7 H 0 1 N N N N N N 21.215 20.596 59.882 -8.728 -3.658 -0.773 H7 V68 39
V68 H8 H8 H 0 1 N N N N N N 19.702 21.565 59.911 -7.832 -3.047 -2.184 H8 V68 40
V68 H9 H9 H 0 1 N N N N N N 19.969 18.801 58.926 -7.662 -0.822 -0.997 H9 V68 41
V68 H10 H10 H 0 1 N N N N N N 18.376 19.618 59.069 -8.603 -1.576 0.312 H10 V68 42
V68 H11 H11 H 0 1 N N N N N N 17.955 17.258 59.035 -7.289 0.364 1.143 H11 V68 43
V68 H12 H12 H 0 1 N N N N N N 19.248 16.943 60.241 -6.748 -1.155 1.897 H12 V68 44
V68 H13 H13 H 0 1 N N N N N N 16.395 17.819 60.659 -5.433 0.245 -0.478 H13 V68 45
V68 H14 H14 H 0 1 N N N N N N 18.104 15.680 61.111 -5.080 1.308 1.773 H14 V68 46
V68 H15 H15 H 0 1 N N N N N N 18.078 16.506 62.706 -4.436 -0.243 2.365 H15 V68 47
V68 H16 H16 H 0 1 N N N N N N 18.036 11.463 61.940 -3.639 4.810 -1.003 H16 V68 48
V68 H17 H17 H 0 1 N N N N N N 13.940 10.848 63.100 0.768 3.655 -1.430 H17 V68 49
V68 H18 H18 H 0 1 N N N N N N 13.549 12.161 63.988 0.804 1.996 -1.168 H18 V68 50
V68 H19 H19 H 0 1 N N N N N N 13.242 13.680 64.795 1.205 1.827 0.810 H19 V68 51
V68 H20 H20 H 0 1 N N N N N N 12.479 16.360 61.541 -0.392 -1.996 -0.281 H20 V68 52
V68 H21 H21 H 0 1 N N N N N N 10.096 16.473 62.183 1.847 -2.913 -0.516 H21 V68 53
V68 H22 H22 H 0 1 N N N N N N 8.285 15.797 63.624 4.295 -2.608 -0.409 H22 V68 54
V68 H23 H23 H 0 1 N N N N N N 11.419 13.019 66.243 3.655 2.127 0.921 H23 V68 55
V68 H24 H24 H 0 1 N N N N N N 9.037 13.098 66.861 5.893 1.202 0.684 H24 V68 56
V68 H25 H25 H 0 1 N N N N N N 6.541 14.620 63.671 7.502 0.494 -0.438 H25 V68 57
V68 H26 H26 H 0 1 N N N N N N 6.232 16.059 64.702 7.486 0.016 1.277 H26 V68 58
V68 H27 H27 H 0 1 N N N N N N 4.813 13.362 64.706 8.908 -1.969 0.687 H27 V68 59
V68 H28 H28 H 0 1 N N N N N N 5.346 13.947 67.060 9.027 -0.587 -2.032 H28 V68 60
V68 H29 H29 H 0 1 N N N N N N 4.525 15.529 66.842 9.994 -1.999 -1.542 H29 V68 61
V68 H30 H30 H 0 1 N N N N N N 3.583 14.004 66.723 8.226 -2.139 -1.691 H30 V68 62
V68 H31 H31 H 0 1 N N N N N N 2.766 14.744 64.468 9.928 0.136 1.507 H31 V68 63
V68 H32 H32 H 0 1 N N N N N N 3.781 16.226 64.449 10.988 -0.670 0.326 H32 V68 64
V68 H33 H33 H 0 1 N N N N N N 3.934 15.015 63.131 10.021 0.742 -0.164 H33 V68 65
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V68 CAO CAM SING N N 1
V68 CAO NBF SING N N 2
V68 CAM CBE SING N N 3
V68 CAC NBF SING N N 4
V68 NBF CAN SING N N 5
V68 CBE CAQ SING N N 6
V68 CBE CAL SING N N 7
V68 CAN CAL SING N N 8
V68 CAQ NBG SING N N 9
V68 N3 C2 DOUB Y N 10
V68 N3 C4 SING Y N 11
V68 C2 N1 SING Y N 12
V68 NBG C4 SING Y N 13
V68 NBG NAT SING Y N 14
V68 C4 C5 DOUB Y N 15
V68 CAF CAH DOUB Y N 16
V68 CAF CAW SING Y N 17
V68 NAT CAY DOUB Y N 18
V68 N1 C6 DOUB Y N 19
V68 C5 C6 SING Y N 20
V68 C5 CAY SING Y N 21
V68 C6 NAD SING N N 22
V68 CAY CAW SING N N 23
V68 CAH CAZ SING Y N 24
V68 CAW CAK DOUB Y N 25
V68 CAZ CAJ DOUB Y N 26
V68 CAZ CBA SING Y N 27
V68 CAJ CAV SING Y N 28
V68 CAA CBD SING N N 29
V68 CAK CBA SING Y N 30
V68 CBA CAG DOUB Y N 31
V68 CAP CBD SING N N 32
V68 CAP OAU SING N N 33
V68 CBD CAB SING N N 34
V68 CAV OAU SING N N 35
V68 CAV CAE DOUB Y N 36
V68 CAG CAE SING Y N 37
V68 CAL H1 SING N N 38
V68 CAL H2 SING N N 39
V68 CAN H3 SING N N 40
V68 CAN H4 SING N N 41
V68 CAC H6 SING N N 42
V68 CAC H7 SING N N 43
V68 CAC H8 SING N N 44
V68 CAO H9 SING N N 45
V68 CAO H10 SING N N 46
V68 CAM H11 SING N N 47
V68 CAM H12 SING N N 48
V68 CBE H13 SING N N 49
V68 CAQ H14 SING N N 50
V68 CAQ H15 SING N N 51
V68 C2 H16 SING N N 52
V68 NAD H17 SING N N 53
V68 NAD H18 SING N N 54
V68 CAK H19 SING N N 55
V68 CAF H20 SING N N 56
V68 CAH H21 SING N N 57
V68 CAJ H22 SING N N 58
V68 CAG H23 SING N N 59
V68 CAE H24 SING N N 60
V68 CAP H25 SING N N 61
V68 CAP H26 SING N N 62
V68 CBD H27 SING N N 63
V68 CAB H28 SING N N 64
V68 CAB H29 SING N N 65
V68 CAB H30 SING N N 66
V68 CAA H31 SING N N 67
V68 CAA H32 SING N N 68
V68 CAA H33 SING N N 69
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V68 SMILES ACDLabs 12.01 n1c(c2c(nc1)n(nc2c4cc3ccc(OCC(C)C)cc3cc4)CC5CCN(C)CC5)N
V68 InChI InChI 1.03 InChI=1S/C26H32N6O/c1-17(2)15-33-22-7-6-19-12-21(5-4-20(19)13-22)24-23-25(27)28-16-29-26(23)32(30-24)14-18-8-10-31(3)11-9-18/h4-7,12-13,16-18H,8-11,14-15H2,1-3H3,(H2,27,28,29)
V68 InChIKey InChI 1.03 GOKRPYKIPRDTFC-UHFFFAOYSA-N
V68 SMILES_CANONICAL CACTVS 3.385 CC(C)COc1ccc2cc(ccc2c1)c3nn(CC4CCN(C)CC4)c5ncnc(N)c35
V68 SMILES CACTVS 3.385 CC(C)COc1ccc2cc(ccc2c1)c3nn(CC4CCN(C)CC4)c5ncnc(N)c35
V68 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CC(C)COc1ccc2cc(ccc2c1)c3c4c(ncnc4n(n3)CC5CCN(CC5)C)N
V68 SMILES "OpenEye OEToolkits" 1.7.6 CC(C)COc1ccc2cc(ccc2c1)c3c4c(ncnc4n(n3)CC5CCN(CC5)C)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V68 "SYSTEMATIC NAME" ACDLabs 12.01 1-[(1-methylpiperidin-4-yl)methyl]-3-[6-(2-methylpropoxy)naphthalen-2-yl]-1H-pyrazolo[3,4-d]pyrimidin-4-amine
V68 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 1-[(1-methylpiperidin-4-yl)methyl]-3-[6-(2-methylpropoxy)naphthalen-2-yl]pyrazolo[3,4-d]pyrimidin-4-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V68 'Create component' 2013-03-04 RCSB
V68 'Initial release' 2014-03-19 RCSB
V68 'Modify name' 2014-03-19 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
V68 CAL C 7.457 -2.485 1
V68 CAN C 8.342 -3.696 2
V68 NBF N 7.737 -5.068 3
V68 CAC C 8.623 -6.279 4
V68 CAO C 6.246 -5.230 5
V68 CAM C 5.360 -4.020 6
V68 CBE C 5.965 -2.647 7
V68 CAQ C 5.080 -1.437 8
V68 NBG N 5.685 -0.064 9
V68 NAT N 7.143 0.249 10
V68 C4 C 4.934 1.224 11
V68 N3 N 3.466 1.533 12
V68 C2 C 3.000 2.959 13
V68 N1 N 4.002 4.075 14
V68 C6 C 5.470 3.766 15
V68 NAD N 6.471 4.882 16
V68 C5 C 5.936 2.340 17
V68 CAY C 7.297 1.732 18
V68 CAW C 8.596 2.482 19
V68 CAK C 9.895 1.732 20
V68 CAF C 8.596 3.982 21
V68 CAH C 9.895 4.732 22
V68 CAZ C 11.194 3.982 23
V68 CAJ C 12.535 4.784 24
V68 CBA C 11.194 2.482 25
V68 CAG C 12.535 1.680 26
V68 CAE C 13.894 2.451 27
V68 CAV C 13.894 4.014 28
V68 OAU O 15.191 4.769 29
V68 CAP C 16.492 4.024 30
V68 CBD C 17.788 4.779 31
V68 CAB C 17.783 6.279 32
V68 CAA C 19.090 4.034 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
V68 CAO CAM SINGLE NONE 1
V68 CAO NBF SINGLE NONE 2
V68 CAM CBE SINGLE NONE 3
V68 CAC NBF SINGLE NONE 4
V68 NBF CAN SINGLE NONE 5
V68 CBE CAQ SINGLE NONE 6
V68 CBE CAL SINGLE NONE 7
V68 CAN CAL SINGLE NONE 8
V68 CAQ NBG SINGLE NONE 9
V68 N3 C2 DOUBLE NONE 10
V68 N3 C4 SINGLE NONE 11
V68 C2 N1 SINGLE NONE 12
V68 NBG C4 SINGLE NONE 13
V68 NBG NAT SINGLE NONE 14
V68 C4 C5 DOUBLE NONE 15
V68 CAF CAH DOUBLE NONE 16
V68 CAF CAW SINGLE NONE 17
V68 NAT CAY DOUBLE NONE 18
V68 N1 C6 DOUBLE NONE 19
V68 C5 C6 SINGLE NONE 20
V68 C5 CAY SINGLE NONE 21
V68 C6 NAD SINGLE NONE 22
V68 CAY CAW SINGLE NONE 23
V68 CAH CAZ SINGLE NONE 24
V68 CAW CAK DOUBLE NONE 25
V68 CAZ CAJ SINGLE NONE 26
V68 CAZ CBA DOUBLE NONE 27
V68 CAJ CAV DOUBLE NONE 28
V68 CAA CBD SINGLE NONE 29
V68 CAK CBA SINGLE NONE 30
V68 CBA CAG SINGLE NONE 31
V68 CAP CBD SINGLE NONE 32
V68 CAP OAU SINGLE NONE 33
V68 CBD CAB SINGLE NONE 34
V68 CAV OAU SINGLE NONE 35
V68 CAV CAE SINGLE NONE 36
V68 CAG CAE DOUBLE NONE 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
V68 MurckoScaffold S1 scaffold c1ccc2cc(-c3nn(CC4CCNCC4)c4ncncc34)ccc2c1 InChI=1S/C21H21N5/c1-2-4-17-11-18(6-5-16(17)3-1)20-19-12-23-14-24-21(19)26(25-20)13-15-7-9-22-10-8-15/h1-6,11-12,14-15,22H,7-10,13H2 BTOAMTUUDVYTFE-UHFFFAOYSA-N
V68 napthalene F1 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
V68 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
V68 pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
V68 pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
V68 CAL S1 1
V68 CAN S1 1
V68 NBF S1 1
V68 CAO S1 1
V68 CAM S1 1
V68 CBE S1 1
V68 CAQ S1 1
V68 NBG S1 1
V68 NAT S1 1
V68 C4 S1 1
V68 N3 S1 1
V68 C2 S1 1
V68 N1 S1 1
V68 C6 S1 1
V68 C5 S1 1
V68 CAY S1 1
V68 CAW S1 1
V68 CAK S1 1
V68 CAF S1 1
V68 CAH S1 1
V68 CAZ S1 1
V68 CAJ S1 1
V68 CBA S1 1
V68 CAG S1 1
V68 CAE S1 1
V68 CAV S1 1
V68 CAW F1 1
V68 CAF F1 1
V68 CAH F1 1
V68 CAZ F1 1
V68 CBA F1 1
V68 CAK F1 1
V68 CAG F1 1
V68 CAE F1 1
V68 CAV F1 1
V68 CAJ F1 1
V68 CAW F2 1
V68 CAF F2 1
V68 CAH F2 1
V68 CAZ F2 1
V68 CBA F2 1
V68 CAK F2 1
V68 CAZ F2 2
V68 CAJ F2 2
V68 CAV F2 2
V68 CAE F2 2
V68 CAG F2 2
V68 CBA F2 2
V68 C4 F3 1
V68 C5 F3 1
V68 CAY F3 1
V68 NAT F3 1
V68 NBG F3 1
V68 C5 F4 1
V68 C4 F4 1
V68 N3 F4 1
V68 C2 F4 1
V68 N1 F4 1
V68 C6 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id V68
_pdbe_chem_comp_rdkit_properties.exactmw 444.264
_pdbe_chem_comp_rdkit_properties.amw 444.583
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 65
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.423
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 239.195
_pdbe_chem_comp_rdkit_properties.tpsa 82.090
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.525
_pdbe_chem_comp_rdkit_properties.CrippenMR 126.063
_pdbe_chem_comp_rdkit_properties.chi0v 16.092
_pdbe_chem_comp_rdkit_properties.chi1v 8.818
_pdbe_chem_comp_rdkit_properties.chi2v 4.044
_pdbe_chem_comp_rdkit_properties.chi3v 4.044
_pdbe_chem_comp_rdkit_properties.chi4v 2.721
_pdbe_chem_comp_rdkit_properties.chi0n 48.092
_pdbe_chem_comp_rdkit_properties.chi1n 24.712
_pdbe_chem_comp_rdkit_properties.chi2n 4.044
_pdbe_chem_comp_rdkit_properties.chi3n 4.044
_pdbe_chem_comp_rdkit_properties.chi4n 2.721
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.190
_pdbe_chem_comp_rdkit_properties.kappa1 5.713
_pdbe_chem_comp_rdkit_properties.kappa2 8.981
_pdbe_chem_comp_rdkit_properties.kappa3 4.503
_pdbe_chem_comp_rdkit_properties.Phi 1.555
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
V68 UniChem ChEMBL CHEMBL5785484
V68 UniChem ZINC ZINC000098209520
V68 UniChem SureChEMBL SCHEMBL14617281
V68 UniChem BindingDb 341808
V68 UniChem PubChem 71217442
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
V68 CAL 4.654 -1.307 -0.882 ETKDGv3 1
V68 CAN 6.087 -1.861 -0.770 ETKDGv3 2
V68 NBF 7.057 -0.759 -0.651 ETKDGv3 3
V68 CAC 8.386 -1.277 -0.294 ETKDGv3 4
V68 CAO 7.130 0.025 -1.905 ETKDGv3 5
V68 CAM 5.740 0.285 -2.529 ETKDGv3 6
V68 CBE 4.593 0.107 -1.516 ETKDGv3 7
V68 CAQ 4.604 1.239 -0.462 ETKDGv3 8
V68 NBG 3.385 1.224 0.341 ETKDGv3 9
V68 NAT 2.095 1.451 -0.159 ETKDGv3 10
V68 C4 3.225 0.738 1.660 ETKDGv3 11
V68 N3 4.252 0.275 2.544 ETKDGv3 12
V68 C2 3.907 -0.163 3.724 ETKDGv3 13
V68 N1 2.519 -0.145 4.138 ETKDGv3 14
V68 C6 1.570 0.265 3.337 ETKDGv3 15
V68 NAD 0.233 0.377 3.824 ETKDGv3 16
V68 C5 1.953 0.699 1.979 ETKDGv3 17
V68 CAY 1.237 1.156 0.773 ETKDGv3 18
V68 CAW -0.214 1.140 0.523 ETKDGv3 19
V68 CAK -0.963 0.079 0.872 ETKDGv3 20
V68 CAF -0.842 2.268 -0.206 ETKDGv3 21
V68 CAH -2.153 2.252 -0.480 ETKDGv3 22
V68 CAZ -2.984 1.101 -0.065 ETKDGv3 23
V68 CAJ -4.435 1.081 -0.358 ETKDGv3 24
V68 CBA -2.414 0.060 0.580 ETKDGv3 25
V68 CAG -3.244 -1.093 0.990 ETKDGv3 26
V68 CAE -4.556 -1.106 0.724 ETKDGv3 27
V68 CAV -5.191 0.037 0.013 ETKDGv3 28
V68 OAU -6.559 0.062 -0.285 ETKDGv3 29
V68 CAP -7.470 -0.982 0.054 ETKDGv3 30
V68 CBD -8.890 -0.634 -0.418 ETKDGv3 31
V68 CAB -9.408 0.635 0.271 ETKDGv3 32
V68 CAA -8.947 -0.486 -1.943 ETKDGv3 33
V68 H1 4.178 -1.311 0.120 ETKDGv3 34
V68 H2 4.060 -2.009 -1.509 ETKDGv3 35
V68 H3 6.320 -2.484 -1.665 ETKDGv3 36
V68 H4 6.138 -2.523 0.123 ETKDGv3 37
V68 H6 9.116 -0.442 -0.224 ETKDGv3 38
V68 H7 8.747 -2.013 -1.046 ETKDGv3 39
V68 H8 8.347 -1.766 0.703 ETKDGv3 40
V68 H9 7.603 1.006 -1.678 ETKDGv3 41
V68 H10 7.768 -0.487 -2.662 ETKDGv3 42
V68 H11 5.582 -0.435 -3.362 ETKDGv3 43
V68 H12 5.708 1.303 -2.977 ETKDGv3 44
V68 H13 3.638 0.190 -2.082 ETKDGv3 45
V68 H14 5.490 1.158 0.202 ETKDGv3 46
V68 H15 4.665 2.222 -0.977 ETKDGv3 47
V68 H16 4.666 -0.519 4.408 ETKDGv3 48
V68 H17 -0.478 0.952 3.322 ETKDGv3 49
V68 H18 -0.016 -0.003 4.764 ETKDGv3 50
V68 H19 -0.509 -0.776 1.358 ETKDGv3 51
V68 H20 -0.242 3.116 -0.514 ETKDGv3 52
V68 H21 -2.601 3.085 -1.007 ETKDGv3 53
V68 H22 -4.889 1.917 -0.876 ETKDGv3 54
V68 H23 -2.792 -1.930 1.508 ETKDGv3 55
V68 H24 -5.144 -1.960 1.033 ETKDGv3 56
V68 H25 -7.145 -1.931 -0.426 ETKDGv3 57
V68 H26 -7.474 -1.130 1.157 ETKDGv3 58
V68 H27 -9.560 -1.475 -0.131 ETKDGv3 59
V68 H28 -9.384 0.509 1.374 ETKDGv3 60
V68 H29 -8.788 1.515 -0.004 ETKDGv3 61
V68 H30 -10.459 0.831 -0.032 ETKDGv3 62
V68 H31 -8.592 -1.418 -2.432 ETKDGv3 63
V68 H32 -8.314 0.361 -2.282 ETKDGv3 64
V68 H33 -9.993 -0.302 -2.270 ETKDGv3 65
#