data_UGA
#
_chem_comp.id UGA
_chem_comp.name "URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H22 N2 O18 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "UDP-GLUCURONIC ACID"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-12-13
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 580.285
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code UGA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1DLJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UGA "C1'" "C1'" C 0 1 N N R N N N -16.924 14.694 55.748 0.767 0.386 4.945 "C1'" UGA 1
UGA "C2'" "C2'" C 0 1 N N R N N N -18.004 14.883 54.666 1.013 -0.445 6.205 "C2'" UGA 2
UGA "O2'" "O2'" O 0 1 N N N N N N -17.897 16.200 54.150 2.225 -1.188 6.061 "O2'" UGA 3
UGA "C3'" "C3'" C 0 1 N N S N N N -19.398 14.685 55.264 -0.159 -1.411 6.404 "C3'" UGA 4
UGA "O3'" "O3'" O 0 1 N N N N N N -20.406 14.802 54.248 -0.019 -2.086 7.655 "O3'" UGA 5
UGA "C4'" "C4'" C 0 1 N N S N N N -19.474 13.310 55.919 -1.466 -0.609 6.396 "C4'" UGA 6
UGA "O4'" "O4'" O 0 1 N N N N N N -20.759 13.143 56.512 -2.582 -1.501 6.427 "O4'" UGA 7
UGA "C5'" "C5'" C 0 1 N N S N N N -18.375 13.242 56.991 -1.523 0.237 5.122 "C5'" UGA 8
UGA "O5'" "O5'" O 0 1 N N N N N N -17.083 13.444 56.385 -0.427 1.150 5.096 "O5'" UGA 9
UGA "C6'" "C6'" C 0 1 N N N N N N -18.346 11.867 57.651 -2.817 1.008 5.092 "C6'" UGA 10
UGA "O'P" "O6'1" O 0 1 N N N N N N -18.688 10.853 56.983 -2.801 2.215 5.052 "O'P" UGA 11
UGA "O'Q" "O6'2" O 0 1 N N N N N N -17.979 11.798 58.850 -3.989 0.352 5.110 "O'Q" UGA 12
UGA PB PB P 0 1 N N S N N N -15.764 16.080 57.620 1.166 0.328 2.536 PB UGA 13
UGA O1B O1B O 0 1 N N N N N N -15.017 14.825 57.911 2.582 0.705 2.743 O1B UGA 14
UGA O2B O2B O 0 1 N N N N N N -16.298 16.901 58.764 0.280 1.658 2.338 O2B UGA 15
UGA O3B O3B O 0 1 N N N N N N -16.990 15.746 56.660 0.633 -0.484 3.820 O3B UGA 16
UGA O3A O3A O 0 1 N N N N N N -14.765 17.002 56.797 1.043 -0.598 1.225 O3A UGA 17
UGA PA PA P 0 1 N N R N N N -14.620 17.701 55.363 1.590 0.273 -0.012 PA UGA 18
UGA O1A O1A O 0 1 N N N N N N -14.970 19.128 55.494 3.000 0.650 0.233 O1A UGA 19
UGA O2A O2A O 0 1 N N N N N N -15.302 16.864 54.350 0.698 1.603 -0.168 O2A UGA 20
UGA O5D O5* O 0 1 N N N N N N -13.045 17.572 55.105 1.496 -0.597 -1.364 O5D UGA 21
UGA C5D C5* C 0 1 N N N N N N -12.428 16.273 55.128 1.993 0.226 -2.421 C5D UGA 22
UGA C4D C4* C 0 1 N N R N N N -10.922 16.375 54.974 1.931 -0.545 -3.740 C4D UGA 23
UGA O4D O4* O 0 1 N N N N N N -10.588 16.739 53.602 0.568 -0.880 -4.047 O4D UGA 24
UGA C3D C3* C 0 1 N N S N N N -10.363 17.471 55.875 2.458 0.337 -4.889 C3D UGA 25
UGA O3D O3* O 0 1 N N N N N N -9.106 17.031 56.418 3.592 -0.267 -5.513 O3D UGA 26
UGA C2D C2* C 0 1 N N R N N N -10.195 18.656 54.924 1.268 0.413 -5.881 C2D UGA 27
UGA O2D O2* O 0 1 N N N N N N -9.130 19.545 55.349 1.724 0.311 -7.231 O2D UGA 28
UGA C1D C1* C 0 1 N N R N N N -9.827 17.973 53.610 0.434 -0.830 -5.483 C1D UGA 29
UGA N1 N1 N 0 1 Y N N N N N -10.181 18.878 52.514 -0.969 -0.657 -5.865 N1 UGA 30
UGA C6 C6 C 0 1 Y N N N N N -11.505 19.106 52.200 -1.574 -1.588 -6.664 C6 UGA 31
UGA C2 C2 C 0 1 Y N N N N N -9.161 19.512 51.826 -1.653 0.413 -5.421 C2 UGA 32
UGA O2 O2 O 0 1 N N N N N N -7.966 19.331 52.061 -1.096 1.228 -4.711 O2 UGA 33
UGA N3 N3 N 0 1 Y N N N N N -9.581 20.371 50.833 -2.943 0.599 -5.760 N3 UGA 34
UGA C4 C4 C 0 1 Y N N N N N -10.886 20.652 50.475 -3.575 -0.295 -6.546 C4 UGA 35
UGA O4 O4 O 0 1 N N N N N N -11.124 21.476 49.593 -4.743 -0.129 -6.849 O4 UGA 36
UGA C5 C5 C 0 1 Y N N N N N -11.872 19.945 51.230 -2.868 -1.428 -7.015 C5 UGA 37
UGA "H1'1" "1H1'" H 0 0 N N N N N N -15.914 14.703 55.275 1.609 1.059 4.784 "H1'1" UGA 38
UGA "H2'1" "1H2'" H 0 0 N N N N N N -17.854 14.131 53.855 1.091 0.215 7.069 "H2'1" UGA 39
UGA "HO'2" "2HO'" H 0 0 N N N N N N -18.563 16.316 53.482 2.936 -0.544 5.939 "HO'2" UGA 40
UGA "H3'1" "1H3'" H 0 0 N N N N N N -19.580 15.475 56.029 -0.173 -2.141 5.594 "H3'1" UGA 41
UGA "HO'3" "3HO'" H 0 0 N N N N N N -21.271 14.679 54.619 0.816 -2.572 7.618 "HO'3" UGA 42
UGA "H4'1" "1H4'" H 0 0 N N N N N N -19.324 12.498 55.169 -1.495 0.042 7.269 "H4'1" UGA 43
UGA "HO'4" "4HO'" H 0 0 N N N N N N -20.806 12.286 56.920 -3.378 -0.952 6.416 "HO'4" UGA 44
UGA "H5'1" "1H5'" H 0 0 N N N N N N -18.595 14.032 57.746 -1.470 -0.416 4.252 "H5'1" UGA 45
UGA "HO'6" "6HO'" H 0 0 N N N N N N -17.960 10.941 59.261 -4.820 0.847 5.090 "HO'6" UGA 46
UGA HOB2 2HOB H 0 0 N N N N N N -16.774 17.701 58.578 -0.632 1.368 2.206 HOB2 UGA 47
UGA HOA2 2HOA H 0 0 N N N N N N -15.216 17.278 53.499 -0.210 1.313 -0.327 HOA2 UGA 48
UGA H5A1 1H5* H 0 0 N N N N N N -12.707 15.703 56.044 1.384 1.126 -2.497 H5A1 UGA 49
UGA "H5'2" 2H5* H 0 0 N N N N N N -12.872 15.595 54.362 3.026 0.503 -2.210 "H5'2" UGA 50
UGA H4A1 1H4* H 0 0 N N N N N N -10.486 15.385 55.246 2.529 -1.453 -3.667 H4A1 UGA 51
UGA H3A1 1H3* H 0 0 N N N N N N -11.007 17.731 56.746 2.712 1.331 -4.520 H3A1 UGA 52
UGA HOA3 3HO* H 0 0 N N N N N N -8.757 17.713 56.979 3.837 0.299 -6.258 HOA3 UGA 53
UGA H2A1 1H2* H 0 0 N N N N N N -11.105 19.297 54.867 0.696 1.329 -5.734 H2A1 UGA 54
UGA HOC2 2HO* H 0 0 N N N N N N -9.025 20.281 54.758 2.234 1.112 -7.415 HOC2 UGA 55
UGA H1A1 1H1* H 0 0 N N N N N N -8.742 17.742 53.494 0.846 -1.730 -5.939 H1A1 UGA 56
UGA H61 1H6 H 0 1 N N N N N N -12.310 18.592 52.751 -1.019 -2.446 -7.013 H61 UGA 57
UGA HN3 HN3 H 0 1 N N N N N N -8.848 20.849 50.307 -3.420 1.378 -5.434 HN3 UGA 58
UGA H51 1H5 H 0 1 N N N N N N -12.956 20.050 51.057 -3.358 -2.155 -7.646 H51 UGA 59
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UGA "C1'" "C2'" SING N N 1
UGA "C1'" "O5'" SING N N 2
UGA "C1'" O3B SING N N 3
UGA "C1'" "H1'1" SING N N 4
UGA "C2'" "O2'" SING N N 5
UGA "C2'" "C3'" SING N N 6
UGA "C2'" "H2'1" SING N N 7
UGA "O2'" "HO'2" SING N N 8
UGA "C3'" "O3'" SING N N 9
UGA "C3'" "C4'" SING N N 10
UGA "C3'" "H3'1" SING N N 11
UGA "O3'" "HO'3" SING N N 12
UGA "C4'" "O4'" SING N N 13
UGA "C4'" "C5'" SING N N 14
UGA "C4'" "H4'1" SING N N 15
UGA "O4'" "HO'4" SING N N 16
UGA "C5'" "O5'" SING N N 17
UGA "C5'" "C6'" SING N N 18
UGA "C5'" "H5'1" SING N N 19
UGA "C6'" "O'P" DOUB N N 20
UGA "C6'" "O'Q" SING N N 21
UGA "O'Q" "HO'6" SING N N 22
UGA PB O1B DOUB N N 23
UGA PB O2B SING N N 24
UGA PB O3B SING N N 25
UGA PB O3A SING N N 26
UGA O2B HOB2 SING N N 27
UGA O3A PA SING N N 28
UGA PA O1A DOUB N N 29
UGA PA O2A SING N N 30
UGA PA O5D SING N N 31
UGA O2A HOA2 SING N N 32
UGA O5D C5D SING N N 33
UGA C5D C4D SING N N 34
UGA C5D H5A1 SING N N 35
UGA C5D "H5'2" SING N N 36
UGA C4D O4D SING N N 37
UGA C4D C3D SING N N 38
UGA C4D H4A1 SING N N 39
UGA O4D C1D SING N N 40
UGA C3D O3D SING N N 41
UGA C3D C2D SING N N 42
UGA C3D H3A1 SING N N 43
UGA O3D HOA3 SING N N 44
UGA C2D O2D SING N N 45
UGA C2D C1D SING N N 46
UGA C2D H2A1 SING N N 47
UGA O2D HOC2 SING N N 48
UGA C1D N1 SING N N 49
UGA C1D H1A1 SING N N 50
UGA N1 C6 SING Y N 51
UGA N1 C2 SING Y N 52
UGA C6 C5 DOUB Y N 53
UGA C6 H61 SING N N 54
UGA C2 O2 DOUB N N 55
UGA C2 N3 SING Y N 56
UGA N3 C4 SING Y N 57
UGA N3 HN3 SING N N 58
UGA C4 O4 DOUB N N 59
UGA C4 C5 SING Y N 60
UGA C5 H51 SING N N 61
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UGA SMILES ACDLabs 10.04 O=C(O)C3OC(OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O)C(O)C(O)C3O
UGA SMILES_CANONICAL CACTVS 3.341 O[C@@H]1[C@@H](O)[C@H](O[C@@H]([C@H]1O)C(O)=O)O[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O
UGA SMILES CACTVS 3.341 O[CH]1[CH](O)[CH](O[CH]([CH]1O)C(O)=O)O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O
UGA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@@](=O)(O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)C(=O)O)O)O)O)O)O
UGA SMILES "OpenEye OEToolkits" 1.5.0 C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OC3C(C(C(C(O3)C(=O)O)O)O)O)O)O
UGA InChI InChI 1.03 InChI=1S/C15H22N2O18P2/c18-5-1-2-17(15(26)16-5)12-9(22)6(19)4(32-12)3-31-36(27,28)35-37(29,30)34-14-10(23)7(20)8(21)11(33-14)13(24)25/h1-2,4,6-12,14,19-23H,3H2,(H,24,25)(H,27,28)(H,29,30)(H,16,18,26)/t4-,6-,7+,8+,9-,10-,11+,12-,14-/m1/s1
UGA InChIKey InChI 1.03 HDYANYHVCAPMJV-LXQIFKJMSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UGA "SYSTEMATIC NAME" ACDLabs 10.04 "(2S,3S,4S,5R,6R)-6-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-3,4,5-trihydroxytetrahydro-2H-pyran-2-carboxylic acid (non-preferred name)"
UGA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3S,4S,5R,6R)-6-[[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-3,4,5-trihydroxy-oxane-2-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UGA 'Create component' 1999-12-13 RCSB
UGA 'Modify descriptor' 2011-06-04 RCSB
UGA 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id UGA
_pdbx_chem_comp_synonyms.name "UDP-GLUCURONIC ACID"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id UGA
_pdbe_chem_comp_drugbank_details.drugbank_id DB03041
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'UDP-alpha-D-glucuronic acid'
_pdbe_chem_comp_drugbank_details.description
'A nucleoside diphosphate sugar which serves as a source of glucuronic acid for polysaccharide biosynthesis. It may also be epimerized to UDP iduronic acid, which donates iduronic acid to polysaccharides. In animals, UDP glucuronic acid is used for formation of many glucosiduronides with various aglycones. [PubChem]'
_pdbe_chem_comp_drugbank_details.cas_number 2616-64-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
UGA 'UDP-GLUCURONIC ACID' wwPDB ?
UGA UDP-alpha-D-glucuronate DrugBank ?
UGA 'UDP-alpha-D-glucuronic acid' DrugBank ?
UGA UDP-D-glucuronate DrugBank ?
UGA UDP-glucuronate DrugBank ?
UGA 'UDP-Glucuronic Acid' DrugBank ?
UGA UDPglucuronate DrugBank ?
UGA 'uridine diphosphate glucuronic acid' DrugBank ?
UGA "Uridine-5'-diphosphate-glucuronic acid" DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id UGA
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03041
_pdbe_chem_comp_drugbank_classification.parent 'Pyrimidine nucleotide sugars'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Pyrimidine nucleotides'
_pdbe_chem_comp_drugbank_classification.superclass 'Nucleosides, nucleotides, and analogues'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as pyrimidine nucleotide sugars. These are pyrimidine nucleotides bound to a saccharide derivative through the terminal phosphate group.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
UGA DB03041 'UDP-glucose 4-epimerase' Humans Q14376 unknown 1
UGA DB03041 'Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3' Humans O94766 unknown 2
UGA DB03041 'UDP-glucose 6-dehydrogenase' 'Streptococcus pyogenes' P0C0F4 unknown 3
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
UGA "C1'" C 8.196 -5.285 1
UGA "C2'" C 8.196 -6.785 2
UGA "O2'" O 9.495 -7.535 3
UGA "C3'" C 6.897 -7.535 4
UGA "O3'" O 6.897 -9.035 5
UGA "C4'" C 5.598 -6.785 6
UGA "O4'" O 4.299 -7.535 7
UGA "C5'" C 5.598 -5.285 8
UGA "O5'" O 6.897 -4.535 9
UGA "C6'" C 4.299 -4.535 10
UGA "O'P" O 4.299 -3.035 11
UGA "O'Q" O 3.000 -5.285 12
UGA PB P 9.495 -3.035 13
UGA O1B O 10.995 -3.035 14
UGA O2B O 7.995 -3.035 15
UGA O3B O 9.495 -4.535 16
UGA O3A O 9.495 -1.535 17
UGA PA P 10.794 -0.785 18
UGA O1A O 10.044 0.514 19
UGA O2A O 11.544 -2.084 20
UGA O5D O 12.093 -0.035 21
UGA C5D C 12.093 1.465 22
UGA C4D C 13.392 2.215 23
UGA O4D O 13.549 3.707 24
UGA C3D C 14.763 1.605 25
UGA O3D O 15.075 0.138 26
UGA C2D C 15.766 2.720 27
UGA O2D O 17.258 2.563 28
UGA C1D C 15.016 4.019 29
UGA N1 N 15.626 5.389 30
UGA C6 C 14.745 6.603 31
UGA C2 C 17.118 5.546 32
UGA O2 O 18.000 4.332 33
UGA N3 N 17.728 6.916 34
UGA C4 C 16.847 8.130 35
UGA O4 O 17.457 9.500 36
UGA C5 C 15.355 7.973 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
UGA "C1'" "C2'" SINGLE NONE 1
UGA "C1'" "O5'" SINGLE NONE 2
UGA "C1'" O3B SINGLE BEGINDASH 3
UGA "C2'" "O2'" SINGLE BEGINDASH 4
UGA "C2'" "C3'" SINGLE NONE 5
UGA "C3'" "O3'" SINGLE BEGINWEDGE 6
UGA "C3'" "C4'" SINGLE NONE 7
UGA "C4'" "O4'" SINGLE BEGINDASH 8
UGA "C4'" "C5'" SINGLE NONE 9
UGA "C5'" "O5'" SINGLE NONE 10
UGA "C5'" "C6'" SINGLE BEGINWEDGE 11
UGA "C6'" "O'P" DOUBLE NONE 12
UGA "C6'" "O'Q" SINGLE NONE 13
UGA PB O1B DOUBLE NONE 14
UGA PB O2B SINGLE BEGINWEDGE 15
UGA PB O3B SINGLE NONE 16
UGA PB O3A SINGLE NONE 17
UGA O3A PA SINGLE NONE 18
UGA PA O1A DOUBLE NONE 19
UGA PA O2A SINGLE BEGINDASH 20
UGA PA O5D SINGLE NONE 21
UGA O5D C5D SINGLE NONE 22
UGA C4D C5D SINGLE BEGINWEDGE 23
UGA C4D O4D SINGLE NONE 24
UGA C4D C3D SINGLE NONE 25
UGA O4D C1D SINGLE NONE 26
UGA C3D O3D SINGLE BEGINDASH 27
UGA C3D C2D SINGLE NONE 28
UGA C2D O2D SINGLE BEGINDASH 29
UGA C2D C1D SINGLE NONE 30
UGA C1D N1 SINGLE BEGINWEDGE 31
UGA N1 C6 SINGLE NONE 32
UGA N1 C2 SINGLE NONE 33
UGA C6 C5 DOUBLE NONE 34
UGA C2 O2 DOUBLE NONE 35
UGA C2 N3 SINGLE NONE 36
UGA N3 C4 SINGLE NONE 37
UGA C4 O4 DOUBLE NONE 38
UGA C4 C5 SINGLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
UGA MurckoScaffold S1 scaffold 'O=c1ccn([C@H]2CC[C@@H](CO[PH](=O)O[PH](=O)O[C@@H]3CCCCO3)O2)c(=O)[nH]1' InChI=1S/C14H22N2O9P2/c17-11-6-7-16(14(18)15-11)12-5-4-10(23-12)9-22-26(19)25-27(20)24-13-3-1-2-8-21-13/h6-7,10,12-13,26-27H,1-5,8-9H2,(H,15,17,18)/t10-,12+,13+/m0/s1 AKKVBKIXAFLMCT-CYZMBNFOSA-N
UGA phosphate F1 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
UGA pyranose F2 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
UGA pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
UGA ribose F4 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
UGA "C1'" S1 1
UGA "C2'" S1 1
UGA "C3'" S1 1
UGA "C4'" S1 1
UGA "C5'" S1 1
UGA "O5'" S1 1
UGA PB S1 1
UGA O1B S1 1
UGA O3B S1 1
UGA O3A S1 1
UGA PA S1 1
UGA O1A S1 1
UGA O5D S1 1
UGA C5D S1 1
UGA C4D S1 1
UGA O4D S1 1
UGA C3D S1 1
UGA C2D S1 1
UGA C1D S1 1
UGA N1 S1 1
UGA C6 S1 1
UGA C2 S1 1
UGA O2 S1 1
UGA N3 S1 1
UGA C4 S1 1
UGA O4 S1 1
UGA C5 S1 1
UGA O2B F1 1
UGA PB F1 1
UGA O1B F1 1
UGA O3B F1 1
UGA O3A F1 1
UGA O3A F1 2
UGA PA F1 2
UGA O1A F1 2
UGA O2A F1 2
UGA O5D F1 2
UGA "C4'" F2 1
UGA "C5'" F2 1
UGA "O5'" F2 1
UGA "C1'" F2 1
UGA "C2'" F2 1
UGA "C3'" F2 1
UGA O3B F2 1
UGA C5 F3 1
UGA C6 F3 1
UGA N1 F3 1
UGA C2 F3 1
UGA N3 F3 1
UGA C4 F3 1
UGA C2D F4 1
UGA C3D F4 1
UGA C4D F4 1
UGA O4D F4 1
UGA C1D F4 1
UGA C5D F4 1
UGA O5D F4 1
UGA O3D F4 1
UGA O2D F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id UGA
_pdbe_chem_comp_rdkit_properties.exactmw 580.034
_pdbe_chem_comp_rdkit_properties.amw 580.285
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 20
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 9
_pdbe_chem_comp_rdkit_properties.NumHBA 19
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 59
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 22
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.667
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 11
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 235.250
_pdbe_chem_comp_rdkit_properties.tpsa 314.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.902
_pdbe_chem_comp_rdkit_properties.CrippenMR 109.552
_pdbe_chem_comp_rdkit_properties.chi0v 18.426
_pdbe_chem_comp_rdkit_properties.chi1v 11.312
_pdbe_chem_comp_rdkit_properties.chi2v 5.805
_pdbe_chem_comp_rdkit_properties.chi3v 5.805
_pdbe_chem_comp_rdkit_properties.chi4v 3.856
_pdbe_chem_comp_rdkit_properties.chi0n 38.637
_pdbe_chem_comp_rdkit_properties.chi1n 18.604
_pdbe_chem_comp_rdkit_properties.chi2n 3.501
_pdbe_chem_comp_rdkit_properties.chi3n 3.501
_pdbe_chem_comp_rdkit_properties.chi4n 2.091
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.870
_pdbe_chem_comp_rdkit_properties.kappa1 11.704
_pdbe_chem_comp_rdkit_properties.kappa2 11.086
_pdbe_chem_comp_rdkit_properties.kappa3 6.772
_pdbe_chem_comp_rdkit_properties.Phi 3.507
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
UGA UniChem DrugBank DB03041
UGA UniChem 'Guide to Pharmacology' 1784
UGA UniChem 'KEGG LIGAND' C00167
UGA UniChem ChEBI 17200
UGA UniChem ZINC ZINC000008215691
UGA UniChem fdasrs 04SZC4MEFQ
UGA UniChem HMDB HMDB0000935
UGA UniChem NMRShiftDB 60020704
UGA UniChem BindingDb 50209665
UGA UniChem 'EPA CompTox Dashboard' DTXSID00903961
UGA UniChem MetaboLights MTBLC17200
UGA UniChem BRENDA 10803
UGA UniChem BRENDA 1225
UGA UniChem BRENDA 125645
UGA UniChem BRENDA 17101
UGA UniChem BRENDA 212078
UGA UniChem BRENDA 212082
UGA UniChem BRENDA 226
UGA UniChem BRENDA 3237
UGA UniChem BRENDA 465
UGA UniChem BRENDA 630
UGA UniChem BRENDA 995
UGA UniChem 'Probes And Drugs' PD016152
UGA UniChem BRENDA 34975
UGA UniChem 'PubChem TPHARMA' 15932622
UGA UniChem PubChem 17473
UGA UniChem Nikkaji J247.699A
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
UGA "C1'" 4.057 -0.537 0.780 ETKDGv3 1
UGA "C2'" 4.601 -1.940 1.117 ETKDGv3 2
UGA "O2'" 3.617 -2.914 0.877 ETKDGv3 3
UGA "C3'" 5.037 -2.008 2.586 ETKDGv3 4
UGA "O3'" 5.680 -3.235 2.820 ETKDGv3 5
UGA "C4'" 5.991 -0.845 2.904 ETKDGv3 6
UGA "O4'" 6.240 -0.822 4.287 ETKDGv3 7
UGA "C5'" 5.349 0.488 2.457 ETKDGv3 8
UGA "O5'" 5.026 0.460 1.075 ETKDGv3 9
UGA "C6'" 6.294 1.627 2.699 ETKDGv3 10
UGA "O'P" 7.296 1.790 1.951 ETKDGv3 11
UGA "O'Q" 6.082 2.488 3.772 ETKDGv3 12
UGA PB 2.015 1.005 0.757 ETKDGv3 13
UGA O1B 2.857 2.257 0.868 ETKDGv3 14
UGA O2B 0.569 1.237 1.606 ETKDGv3 15
UGA O3B 2.842 -0.308 1.472 ETKDGv3 16
UGA O3A 1.706 0.650 -0.881 ETKDGv3 17
UGA PA 0.628 1.827 -1.474 ETKDGv3 18
UGA O1A 0.525 1.679 -2.976 ETKDGv3 19
UGA O2A 1.200 3.384 -1.131 ETKDGv3 20
UGA O5D -0.918 1.633 -0.777 ETKDGv3 21
UGA C5D -1.377 0.334 -1.067 ETKDGv3 22
UGA C4D -2.728 0.118 -0.381 ETKDGv3 23
UGA O4D -3.677 1.028 -0.886 ETKDGv3 24
UGA C3D -3.259 -1.291 -0.602 ETKDGv3 25
UGA O3D -2.767 -2.174 0.373 ETKDGv3 26
UGA C2D -4.756 -1.094 -0.507 ETKDGv3 27
UGA O2D -5.255 -1.389 0.778 ETKDGv3 28
UGA C1D -4.940 0.393 -0.850 ETKDGv3 29
UGA N1 -5.616 0.542 -2.150 ETKDGv3 30
UGA C6 -4.860 0.411 -3.375 ETKDGv3 31
UGA C2 -7.050 0.689 -2.221 ETKDGv3 32
UGA O2 -7.748 0.730 -1.172 ETKDGv3 33
UGA N3 -7.687 0.783 -3.496 ETKDGv3 34
UGA C4 -6.897 0.689 -4.681 ETKDGv3 35
UGA O4 -7.441 0.772 -5.814 ETKDGv3 36
UGA C5 -5.447 0.486 -4.573 ETKDGv3 37
UGA "H1'1" 3.891 -0.537 -0.321 ETKDGv3 38
UGA "H2'1" 5.492 -2.142 0.476 ETKDGv3 39
UGA "HO'2" 3.551 -3.016 -0.109 ETKDGv3 40
UGA "H3'1" 4.129 -1.928 3.231 ETKDGv3 41
UGA "HO'3" 5.654 -3.392 3.800 ETKDGv3 42
UGA "H4'1" 6.941 -1.007 2.340 ETKDGv3 43
UGA "HO'4" 7.133 -0.409 4.415 ETKDGv3 44
UGA "H5'1" 4.436 0.683 3.065 ETKDGv3 45
UGA "HO'6" 6.718 3.255 3.956 ETKDGv3 46
UGA HOB2 0.167 0.334 1.671 ETKDGv3 47
UGA HOA2 0.466 3.989 -1.404 ETKDGv3 48
UGA H5A1 -1.506 0.203 -2.166 ETKDGv3 49
UGA "H5'2" -0.667 -0.433 -0.682 ETKDGv3 50
UGA H4A1 -2.606 0.306 0.711 ETKDGv3 51
UGA H3A1 -2.995 -1.651 -1.625 ETKDGv3 52
UGA HOA3 -3.031 -3.086 0.083 ETKDGv3 53
UGA H2A1 -5.272 -1.752 -1.241 ETKDGv3 54
UGA HOC2 -4.791 -0.804 1.433 ETKDGv3 55
UGA H1A1 -5.539 0.898 -0.060 ETKDGv3 56
UGA H61 -3.791 0.247 -3.335 ETKDGv3 57
UGA HN3 -8.722 0.910 -3.561 ETKDGv3 58
UGA H51 -4.849 0.389 -5.471 ETKDGv3 59
#