data_TYS
#
_chem_comp.id TYS
_chem_comp.name O-SULFO-L-TYROSINE
_chem_comp.type 'L-PEPTIDE LINKING'
_chem_comp.pdbx_type ATOMP
_chem_comp.formula 'C9 H11 N O6 S'
_chem_comp.mon_nstd_parent_comp_id TYR
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces STY
_chem_comp.formula_weight 261.252
_chem_comp.one_letter_code Y
_chem_comp.three_letter_code TYS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TYS N N N 0 1 N N N Y Y N 16.013 1.950 -4.617 -3.373 1.476 -0.740 N TYS 1
TYS CA CA C 0 1 N N S Y N N 16.552 1.871 -3.258 -3.510 0.055 -0.396 CA TYS 2
TYS CB CB C 0 1 N N N N N N 15.386 1.742 -2.268 -2.563 -0.284 0.757 CB TYS 3
TYS CG CG C 0 1 Y N N N N N 14.473 2.961 -2.241 -1.136 -0.121 0.299 CG TYS 4
TYS CD1 CD1 C 0 1 Y N N N N N 15.001 4.212 -1.950 -0.502 1.099 0.441 CD1 TYS 5
TYS CD2 CD2 C 0 1 Y N N N N N 13.124 2.796 -2.486 -0.463 -1.192 -0.257 CD2 TYS 6
TYS CE1 CE1 C 0 1 Y N N N N N 14.186 5.316 -1.930 0.806 1.252 0.023 CE1 TYS 7
TYS CE2 CE2 C 0 1 Y N N N N N 12.300 3.899 -2.461 0.845 -1.045 -0.677 CE2 TYS 8
TYS CZ CZ C 0 1 Y N N N N N 12.840 5.140 -2.179 1.482 0.180 -0.541 CZ TYS 9
TYS OH OH O 0 1 N N N N N N 12.096 6.125 -2.152 2.768 0.327 -0.954 OH TYS 10
TYS S S S 0 1 N N N N N N 11.372 6.454 -0.939 3.803 0.015 0.118 S TYS 11
TYS O1 O1 O 0 1 N N N N N N 12.284 6.826 0.109 5.061 0.409 -0.412 O1 TYS 12
TYS O2 O2 O 0 1 N N N N N N 10.523 5.390 -0.492 3.280 0.520 1.339 O2 TYS 13
TYS O3 O3 O 0 1 N N N N N N 10.554 7.603 -1.197 3.855 -1.499 0.266 O3 TYS 14
TYS C C C 0 1 N N N Y N Y 17.545 0.752 -2.992 -4.931 -0.226 0.023 C TYS 15
TYS O O O 0 1 N N N Y N Y 18.218 0.693 -1.959 -5.645 0.680 0.381 O TYS 16
TYS OXT OXT O 0 1 N Y N Y N Y 17.577 -0.181 -3.935 -5.402 -1.483 -0.004 OXT TYS 17
TYS H H H 0 1 N N N Y Y N 16.765 2.034 -5.270 -3.941 1.710 -1.541 H TYS 18
TYS H2 HN2 H 0 1 N Y N Y Y N 15.490 1.122 -4.817 -3.600 2.063 0.048 HN2 TYS 19
TYS HA HA H 0 1 N N N Y N N 17.061 2.821 -3.038 -3.260 -0.555 -1.263 HA TYS 20
TYS HB2 HB2 H 0 1 N N N N N N 14.786 0.864 -2.549 -2.755 0.387 1.594 HB2 TYS 21
TYS HB3 HB3 H 0 1 N N N N N N 15.800 1.595 -1.260 -2.728 -1.315 1.072 HB3 TYS 22
TYS HD1 HD1 H 0 1 N N N N N N 16.055 4.316 -1.739 -1.028 1.934 0.880 HD1 TYS 23
TYS HD2 HD2 H 0 1 N N N N N N 12.721 1.816 -2.694 -0.960 -2.146 -0.363 HD2 TYS 24
TYS HE1 HE1 H 0 1 N N N N N N 14.588 6.297 -1.725 1.301 2.205 0.133 HE1 TYS 25
TYS HE2 HE2 H 0 1 N N N N N N 11.243 3.796 -2.660 1.371 -1.883 -1.111 HE2 TYS 26
TYS HO3 HO3 H 0 1 N N N N N N 10.813 8.313 -0.621 4.487 -1.808 0.929 HO3 TYS 27
TYS HXT HXT H 0 1 N Y N Y N Y 18.183 -0.868 -3.681 -6.319 -1.613 0.273 HXT TYS 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TYS N CA SING N N 1
TYS N H SING N N 2
TYS N H2 SING N N 3
TYS CA CB SING N N 4
TYS CA C SING N N 5
TYS CA HA SING N N 6
TYS CB CG SING N N 7
TYS CB HB2 SING N N 8
TYS CB HB3 SING N N 9
TYS CG CD1 DOUB Y N 10
TYS CG CD2 SING Y N 11
TYS CD1 CE1 SING Y N 12
TYS CD1 HD1 SING N N 13
TYS CD2 CE2 DOUB Y N 14
TYS CD2 HD2 SING N N 15
TYS CE1 CZ DOUB Y N 16
TYS CE1 HE1 SING N N 17
TYS CE2 CZ SING Y N 18
TYS CE2 HE2 SING N N 19
TYS CZ OH SING N N 20
TYS OH S SING N N 21
TYS S O1 DOUB N N 22
TYS S O2 DOUB N N 23
TYS S O3 SING N N 24
TYS O3 HO3 SING N N 25
TYS C O DOUB N N 26
TYS C OXT SING N N 27
TYS OXT HXT SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TYS SMILES ACDLabs 12.01 'O=C(O)C(N)Cc1ccc(OS(=O)(=O)O)cc1'
TYS InChI InChI 1.03 'InChI=1S/C9H11NO6S/c10-8(9(11)12)5-6-1-3-7(4-2-6)16-17(13,14)15/h1-4,8H,5,10H2,(H,11,12)(H,13,14,15)/t8-/m0/s1'
TYS InChIKey InChI 1.03 CIQHWLTYGMYQQR-QMMMGPOBSA-N
TYS SMILES_CANONICAL CACTVS 3.370 'N[C@@H](Cc1ccc(O[S](O)(=O)=O)cc1)C(O)=O'
TYS SMILES CACTVS 3.370 'N[CH](Cc1ccc(O[S](O)(=O)=O)cc1)C(O)=O'
TYS SMILES_CANONICAL 'OpenEye OEToolkits' 1.7.6 'c1cc(ccc1C[C@@H](C(=O)O)N)OS(=O)(=O)O'
TYS SMILES 'OpenEye OEToolkits' 1.7.6 'c1cc(ccc1CC(C(=O)O)N)OS(=O)(=O)O'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TYS 'SYSTEMATIC NAME' ACDLabs 12.01 O-sulfo-L-tyrosine
TYS 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.7.6 '(2S)-2-azanyl-3-(4-sulfooxyphenyl)propanoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TYS 'Create component' 1999-07-08 EBI
TYS 'Modify descriptor' 2011-06-04 RCSB
TYS 'Modify leaving atom flag' 2012-11-26 RCSB
TYS 'Modify backbone' 2023-11-03 PDBE
TYS 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id TYS
_pdbx_chem_comp_pcm.modified_residue_id TYR
_pdbx_chem_comp_pcm.type Sulfation
_pdbx_chem_comp_pcm.category 'Named protein modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0286
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
TYS N N 3.805 -2.250 1
TYS CA C 5.104 -3.000 2
TYS CB C 6.404 -2.250 3
TYS CG C 6.404 -0.750 4
TYS CD1 C 7.702 0.000 5
TYS CD2 C 5.104 0.000 6
TYS CE1 C 7.702 1.500 7
TYS CE2 C 5.104 1.500 8
TYS CZ C 6.404 2.250 9
TYS OH O 6.404 3.750 10
TYS S S 7.702 4.500 11
TYS O1 O 9.002 5.250 12
TYS O2 O 6.952 5.799 13
TYS O3 O 8.453 3.201 14
TYS C C 5.104 -4.500 15
TYS O O 3.805 -5.250 16
TYS OXT O 6.404 -5.250 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
TYS CA N SINGLE BEGINWEDGE 1
TYS CA CB SINGLE NONE 2
TYS CA C SINGLE NONE 3
TYS CB CG SINGLE NONE 4
TYS CG CD1 DOUBLE NONE 5
TYS CG CD2 SINGLE NONE 6
TYS CD1 CE1 SINGLE NONE 7
TYS CD2 CE2 DOUBLE NONE 8
TYS CE1 CZ DOUBLE NONE 9
TYS CE2 CZ SINGLE NONE 10
TYS CZ OH SINGLE NONE 11
TYS OH S SINGLE NONE 12
TYS S O1 DOUBLE NONE 13
TYS S O2 DOUBLE NONE 14
TYS S O3 SINGLE NONE 15
TYS C O DOUBLE NONE 16
TYS C OXT SINGLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
TYS MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
TYS peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
TYS phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
TYS CG S1 1
TYS CD1 S1 1
TYS CD2 S1 1
TYS CE1 S1 1
TYS CE2 S1 1
TYS CZ S1 1
TYS O F1 1
TYS C F1 1
TYS CA F1 1
TYS N F1 1
TYS CG F2 1
TYS CD1 F2 1
TYS CE1 F2 1
TYS CZ F2 1
TYS CE2 F2 1
TYS CD2 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id TYS
_pdbe_chem_comp_rdkit_properties.exactmw 261.031
_pdbe_chem_comp_rdkit_properties.amw 261.255
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 113.517
_pdbe_chem_comp_rdkit_properties.tpsa 126.920
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.695
_pdbe_chem_comp_rdkit_properties.CrippenMR 57.058
_pdbe_chem_comp_rdkit_properties.chi0v 8.621
_pdbe_chem_comp_rdkit_properties.chi1v 5.086
_pdbe_chem_comp_rdkit_properties.chi2v 1.595
_pdbe_chem_comp_rdkit_properties.chi3v 1.595
_pdbe_chem_comp_rdkit_properties.chi4v 0.964
_pdbe_chem_comp_rdkit_properties.chi0n 18.805
_pdbe_chem_comp_rdkit_properties.chi1n 8.964
_pdbe_chem_comp_rdkit_properties.chi2n 1.224
_pdbe_chem_comp_rdkit_properties.chi3n 1.224
_pdbe_chem_comp_rdkit_properties.chi4n 0.677
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.640
_pdbe_chem_comp_rdkit_properties.kappa1 4.558
_pdbe_chem_comp_rdkit_properties.kappa2 5.127
_pdbe_chem_comp_rdkit_properties.kappa3 4.808
_pdbe_chem_comp_rdkit_properties.Phi 1.375
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
TYS UniChem ChEBI 46215
TYS UniChem ZINC ZINC000002556660
TYS UniChem fdasrs 29166358BF
TYS UniChem SureChEMBL SCHEMBL245547
TYS UniChem LINCS LSM-36390
TYS UniChem MetaboLights MTBLC46215
TYS UniChem BRENDA 103712
TYS UniChem BRENDA 115943
TYS UniChem BRENDA 137627
TYS UniChem BRENDA 30489
TYS UniChem BRENDA 30490
TYS UniChem BRENDA 44913
TYS UniChem BRENDA 52638
TYS UniChem Nikkaji J630.338B
TYS UniChem HMDB HMDB0155722
TYS UniChem 'PubChem TPHARMA' 14750182
TYS UniChem PubChem 514186
TYS UniChem NMRShiftDB 60023780
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
TYS N -2.730 -1.946 -0.678 ETKDGv3 1
TYS CA -2.976 -0.722 0.092 ETKDGv3 2
TYS CB -1.965 -0.579 1.248 ETKDGv3 3
TYS CG -0.534 -0.447 0.784 ETKDGv3 4
TYS CD1 -0.003 0.760 0.520 ETKDGv3 5
TYS CD2 0.299 -1.660 0.597 ETKDGv3 6
TYS CE1 1.393 0.877 0.049 ETKDGv3 7
TYS CE2 1.562 -1.552 0.169 ETKDGv3 8
TYS CZ 2.148 -0.226 -0.123 ETKDGv3 9
TYS OH 3.477 -0.178 -0.568 ETKDGv3 10
TYS S 4.330 1.254 -0.957 ETKDGv3 11
TYS O1 5.731 0.901 -1.370 ETKDGv3 12
TYS O2 3.643 1.957 -2.094 ETKDGv3 13
TYS O3 4.384 2.271 0.381 ETKDGv3 14
TYS C -3.004 0.504 -0.787 ETKDGv3 15
TYS O -2.251 0.593 -1.795 ETKDGv3 16
TYS OXT -3.836 1.567 -0.452 ETKDGv3 17
TYS H -1.848 -1.850 -1.233 ETKDGv3 18
TYS H2 -3.511 -2.070 -1.363 ETKDGv3 19
TYS HA -3.982 -0.816 0.558 ETKDGv3 20
TYS HB2 -2.242 0.301 1.870 ETKDGv3 21
TYS HB3 -2.052 -1.466 1.911 ETKDGv3 22
TYS HD1 -0.591 1.660 0.645 ETKDGv3 23
TYS HD2 -0.115 -2.639 0.804 ETKDGv3 24
TYS HE1 1.778 1.865 -0.152 ETKDGv3 25
TYS HE2 2.161 -2.444 0.034 ETKDGv3 26
TYS HO3 4.590 1.674 1.144 ETKDGv3 27
TYS HXT -3.857 2.408 -1.016 ETKDGv3 28
#