data_TYQ
#
_chem_comp.id TYQ
_chem_comp.name 3-AMINO-6-HYDROXY-TYROSINE
_chem_comp.type 'L-PEPTIDE LINKING'
_chem_comp.pdbx_type ATOMP
_chem_comp.formula 'C9 H12 N2 O4'
_chem_comp.mon_nstd_parent_comp_id TYR
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-08-26
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 212.203
_chem_comp.one_letter_code Y
_chem_comp.three_letter_code TYQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1D6U
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TYQ N N N 0 1 N N N Y Y N 66.528 76.418 -3.335 1.439 1.013 1.608 N TYQ 1
TYQ CA CA C 0 1 N N S Y N N 65.759 75.351 -2.678 0.147 0.442 2.011 CA TYQ 2
TYQ C C C 0 1 N N N Y N Y 64.694 75.890 -1.739 0.187 0.092 3.476 C TYQ 3
TYQ O O O 0 1 N N N Y N Y 64.893 76.905 -1.070 1.231 -0.228 3.992 O TYQ 4
TYQ CB CB C 0 1 N N N N N N 66.653 74.461 -1.803 -0.131 -0.819 1.192 CB TYQ 5
TYQ CG CG C 0 1 Y N N N N N 67.975 74.056 -2.389 -0.171 -0.468 -0.272 CG TYQ 6
TYQ CD1 CD1 C 0 1 Y N N N N N 68.079 73.005 -3.307 -1.371 -0.105 -0.864 CD1 TYQ 7
TYQ CD2 CD2 C 0 1 Y N N N N N 69.120 74.752 -2.034 0.987 -0.514 -1.025 CD2 TYQ 8
TYQ CE1 CE1 C 0 1 Y N N N N N 69.315 72.676 -3.848 -1.410 0.223 -2.211 CE1 TYQ 9
TYQ CE2 CE2 C 0 1 Y N N N N N 70.332 74.425 -2.573 0.952 -0.191 -2.373 CE2 TYQ 10
TYQ CZ CZ C 0 1 Y N N N N N 70.436 73.396 -3.474 -0.251 0.178 -2.968 CZ TYQ 11
TYQ OZ OZ O 0 1 N N N N N N 66.957 72.297 -3.662 -2.509 -0.062 -0.121 OZ TYQ 12
TYQ N5 N5 N 0 1 N N N N N N 71.511 75.202 -2.202 2.127 -0.237 -3.136 N5 TYQ 13
TYQ OH OH O 0 1 N N N N N N 71.667 73.117 -4.007 -0.289 0.495 -4.290 OH TYQ 14
TYQ OXT OXT O 0 1 N Y N Y N Y 63.581 75.173 -1.671 -0.936 0.135 4.208 OXT TYQ 15
TYQ H H H 0 1 N N N Y Y N 67.243 76.056 -3.965 1.403 1.135 0.607 H TYQ 16
TYQ H2 HN2 H 0 1 N Y N Y Y N 66.933 77.053 -2.647 2.137 0.306 1.789 H2 TYQ 17
TYQ HA HA H 0 1 N N N Y N N 65.300 74.782 -3.520 -0.643 1.172 1.834 HA TYQ 18
TYQ HB2 1HB H 0 1 N N N N N N 66.815 74.949 -0.813 0.659 -1.548 1.369 HB2 TYQ 19
TYQ HB3 2HB H 0 1 N N N N N N 66.087 73.552 -1.491 -1.090 -1.242 1.491 HB3 TYQ 20
TYQ HD2 HD2 H 0 1 N N N N N N 69.065 75.581 -1.309 1.920 -0.800 -0.563 HD2 TYQ 21
TYQ HE1 HE1 H 0 1 N N N N N N 69.405 71.847 -4.570 -2.345 0.509 -2.671 HE1 TYQ 22
TYQ HZ HOZ H 0 1 N N N N N N 67.027 71.583 -4.285 -2.914 -0.939 -0.180 HZ TYQ 23
TYQ HN51 HN51 H 0 0 N N N N N N 72.415 74.957 -2.604 2.102 -0.011 -4.079 HN51 TYQ 24
TYQ HN52 HN52 H 0 0 N N N N N N 71.595 75.203 -1.185 2.965 -0.495 -2.722 HN52 TYQ 25
TYQ HH HH H 0 1 N N N N N N 72.436 73.611 -3.750 -0.466 -0.325 -4.769 HH TYQ 26
TYQ HXT HXT H 0 1 N Y N Y N Y 62.914 75.510 -1.083 -0.911 -0.089 5.148 HXT TYQ 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TYQ N CA SING N N 1
TYQ N H SING N N 2
TYQ N H2 SING N N 3
TYQ CA C SING N N 4
TYQ CA CB SING N N 5
TYQ CA HA SING N N 6
TYQ C O DOUB N N 7
TYQ C OXT SING N N 8
TYQ CB CG SING N N 9
TYQ CB HB2 SING N N 10
TYQ CB HB3 SING N N 11
TYQ CG CD1 DOUB Y N 12
TYQ CG CD2 SING Y N 13
TYQ CD1 CE1 SING Y N 14
TYQ CD1 OZ SING N N 15
TYQ CD2 CE2 DOUB Y N 16
TYQ CD2 HD2 SING N N 17
TYQ CE1 CZ DOUB Y N 18
TYQ CE1 HE1 SING N N 19
TYQ CE2 CZ SING Y N 20
TYQ CE2 N5 SING N N 21
TYQ CZ OH SING N N 22
TYQ OZ HZ SING N N 23
TYQ N5 HN51 SING N N 24
TYQ N5 HN52 SING N N 25
TYQ OH HH SING N N 26
TYQ OXT HXT SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TYQ SMILES ACDLabs 10.04 'O=C(O)C(N)Cc1c(O)cc(O)c(N)c1'
TYQ SMILES_CANONICAL CACTVS 3.341 'N[C@@H](Cc1cc(N)c(O)cc1O)C(O)=O'
TYQ SMILES CACTVS 3.341 'N[CH](Cc1cc(N)c(O)cc1O)C(O)=O'
TYQ SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'c1c(c(cc(c1N)O)O)C[C@@H](C(=O)O)N'
TYQ SMILES 'OpenEye OEToolkits' 1.5.0 'c1c(c(cc(c1N)O)O)CC(C(=O)O)N'
TYQ InChI InChI 1.03 'InChI=1S/C9H12N2O4/c10-5-1-4(2-6(11)9(14)15)7(12)3-8(5)13/h1,3,6,12-13H,2,10-11H2,(H,14,15)/t6-/m0/s1'
TYQ InChIKey InChI 1.03 OIXIYIGKZVEKPI-LURJTMIESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TYQ 'SYSTEMATIC NAME' ACDLabs 10.04 3-amino-6-hydroxy-L-tyrosine
TYQ 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '(2S)-2-amino-3-(5-amino-2,4-dihydroxy-phenyl)propanoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TYQ 'Create component' 1999-08-26 EBI
TYQ 'Modify descriptor' 2011-06-04 RCSB
TYQ 'Modify backbone' 2023-11-03 PDBE
TYQ 'Modify PCM' 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 TYQ TYR Hydroxylation 'Named protein modification' 'Amino-acid side chain' 'Any position' ? ? ? ?
2 TYQ TYR Amination 'Named protein modification' 'Amino-acid side chain' 'Any position' ? ? ? ?
#
_pdbe_chem_comp_drugbank_details.comp_id TYQ
_pdbe_chem_comp_drugbank_details.drugbank_id DB02928
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 3-Amino-6-Hydroxy-Tyrosine
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id TYQ
_pdbe_chem_comp_synonyms.name 3-Amino-6-Hydroxy-Tyrosine
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id TYQ
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02928
_pdbe_chem_comp_drugbank_classification.parent 'Tyrosine and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as tyrosine and derivatives. These are compounds containing tyrosine or a derivative thereof resulting from reaction of tyrosine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.'
#
_pdbe_chem_comp_drugbank_targets.comp_id TYQ
_pdbe_chem_comp_drugbank_targets.drugbank_id DB02928
_pdbe_chem_comp_drugbank_targets.name 'Primary amine oxidase'
_pdbe_chem_comp_drugbank_targets.organism 'Escherichia coli (strain K12)'
_pdbe_chem_comp_drugbank_targets.uniprot_id P46883
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
TYQ N N 9.002 1.268 1
TYQ CA C 7.702 2.018 2
TYQ C C 7.702 3.518 3
TYQ O O 9.002 4.268 4
TYQ CB C 6.404 1.268 5
TYQ CG C 6.404 -0.233 6
TYQ CD1 C 5.104 -0.983 7
TYQ CD2 C 7.702 -0.983 8
TYQ CE1 C 5.104 -2.482 9
TYQ CE2 C 7.702 -2.482 10
TYQ CZ C 6.404 -3.232 11
TYQ OZ O 3.805 -0.233 12
TYQ N5 N 9.002 -3.232 13
TYQ OH O 6.404 -4.732 14
TYQ OXT O 6.404 4.268 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
TYQ CA N SINGLE BEGINWEDGE 1
TYQ CA C SINGLE NONE 2
TYQ CA CB SINGLE NONE 3
TYQ C O DOUBLE NONE 4
TYQ C OXT SINGLE NONE 5
TYQ CB CG SINGLE NONE 6
TYQ CG CD1 DOUBLE NONE 7
TYQ CG CD2 SINGLE NONE 8
TYQ CD1 CE1 SINGLE NONE 9
TYQ CD1 OZ SINGLE NONE 10
TYQ CD2 CE2 DOUBLE NONE 11
TYQ CE1 CZ DOUBLE NONE 12
TYQ CE2 CZ SINGLE NONE 13
TYQ CE2 N5 SINGLE NONE 14
TYQ CZ OH SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
TYQ MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
TYQ peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
TYQ phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
TYQ CG S1 1
TYQ CD1 S1 1
TYQ CD2 S1 1
TYQ CE1 S1 1
TYQ CE2 S1 1
TYQ CZ S1 1
TYQ O F1 1
TYQ C F1 1
TYQ CA F1 1
TYQ N F1 1
TYQ CG F2 1
TYQ CD1 F2 1
TYQ CE1 F2 1
TYQ CZ F2 1
TYQ CE2 F2 1
TYQ CD2 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id TYQ
_pdbe_chem_comp_rdkit_properties.exactmw 212.080
_pdbe_chem_comp_rdkit_properties.amw 212.205
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 103.102
_pdbe_chem_comp_rdkit_properties.tpsa 129.800
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.726
_pdbe_chem_comp_rdkit_properties.CrippenMR 51.189
_pdbe_chem_comp_rdkit_properties.chi0v 7.027
_pdbe_chem_comp_rdkit_properties.chi1v 3.514
_pdbe_chem_comp_rdkit_properties.chi2v 1.349
_pdbe_chem_comp_rdkit_properties.chi3v 1.349
_pdbe_chem_comp_rdkit_properties.chi4v 0.714
_pdbe_chem_comp_rdkit_properties.chi0n 19.027
_pdbe_chem_comp_rdkit_properties.chi1n 9.027
_pdbe_chem_comp_rdkit_properties.chi2n 1.349
_pdbe_chem_comp_rdkit_properties.chi3n 1.349
_pdbe_chem_comp_rdkit_properties.chi4n 0.714
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.950
_pdbe_chem_comp_rdkit_properties.kappa1 3.020
_pdbe_chem_comp_rdkit_properties.kappa2 4.054
_pdbe_chem_comp_rdkit_properties.kappa3 2.503
_pdbe_chem_comp_rdkit_properties.Phi 0.816
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
TYQ UniChem DrugBank DB02928
TYQ UniChem SureChEMBL SCHEMBL4321363
TYQ UniChem PubChem 17754207
TYQ UniChem 'Probes And Drugs' PD007949
TYQ UniChem 'EPA CompTox Dashboard' DTXSID00590830
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
TYQ N 1.943 -0.231 -1.835 ETKDGv3 1
TYQ CA 2.132 0.365 -0.510 ETKDGv3 2
TYQ C 3.599 0.457 -0.206 ETKDGv3 3
TYQ O 4.327 -0.571 -0.266 ETKDGv3 4
TYQ CB 1.408 -0.435 0.594 ETKDGv3 5
TYQ CG -0.093 -0.386 0.430 ETKDGv3 6
TYQ CD1 -0.780 -1.394 -0.149 ETKDGv3 7
TYQ CD2 -0.822 0.825 0.881 ETKDGv3 8
TYQ CE1 -2.248 -1.288 -0.311 ETKDGv3 9
TYQ CE2 -2.152 0.923 0.730 ETKDGv3 10
TYQ CZ -2.903 -0.193 0.104 ETKDGv3 11
TYQ OZ -0.120 -2.536 -0.601 ETKDGv3 12
TYQ N5 -2.840 2.099 1.170 ETKDGv3 13
TYQ OH -4.286 -0.097 -0.052 ETKDGv3 14
TYQ OXT 4.154 1.678 0.165 ETKDGv3 15
TYQ H 2.138 -1.259 -1.791 ETKDGv3 16
TYQ H2 0.946 -0.111 -2.124 ETKDGv3 17
TYQ HA 1.724 1.401 -0.527 ETKDGv3 18
TYQ HB2 1.663 0.001 1.585 ETKDGv3 19
TYQ HB3 1.778 -1.484 0.614 ETKDGv3 20
TYQ HD2 -0.267 1.638 1.335 ETKDGv3 21
TYQ HE1 -2.791 -2.104 -0.770 ETKDGv3 22
TYQ HZ -0.625 -3.297 -1.040 ETKDGv3 23
TYQ HN51 -3.874 2.189 1.058 ETKDGv3 24
TYQ HN52 -2.322 2.892 1.612 ETKDGv3 25
TYQ HH -4.830 -0.840 -0.476 ETKDGv3 26
TYQ HXT 5.141 1.756 0.381 ETKDGv3 27
#