data_TOR
#
_chem_comp.id TOR
_chem_comp.name
"[(3aS,5aR,8aR,8bS)-2,2,7,7-tetramethyltetrahydro-3aH-bis[1,3]dioxolo[4,5-b:4',5'-d]pyran-3a-yl]methyl sulfamate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAD
_chem_comp.formula "C12 H21 N O8 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms topiramate
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-06-03
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 339.362
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TOR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3HKU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TOR CAT CAT C 0 1 N N N N N N 17.166 7.924 13.369 1.326 3.338 0.363 CAT TOR 1
TOR CAU CAU C 0 1 N N N N N N 16.408 6.622 13.694 0.220 2.452 -0.213 CAU TOR 2
TOR CAV CAV C 0 1 N N N N N N 15.204 6.890 14.610 -0.903 3.328 -0.773 CAV TOR 3
TOR OAR OAR O 0 1 N N N N N N 17.361 5.675 14.305 -0.303 1.599 0.820 OAR TOR 4
TOR OAQ OAQ O 0 1 N N N N N N 15.965 6.027 12.475 0.757 1.625 -1.261 OAQ TOR 5
TOR CAK CAK C 0 1 N N S N N N 15.959 4.587 12.753 1.097 0.373 -0.595 CAK TOR 6
TOR CAG CAG C 0 1 N N R N N N 16.125 3.818 11.406 2.424 0.619 0.129 CAG TOR 7
TOR OAF OAF O 0 1 N N N N N N 16.070 2.432 11.709 3.465 0.084 -0.742 OAF TOR 8
TOR CAE CAE C 0 1 N N N N N N 16.859 1.765 10.710 3.409 -1.339 -0.529 CAE TOR 9
TOR CAD CAD C 0 1 N N N N N N 16.051 1.479 9.421 4.819 -1.928 -0.614 CAD TOR 10
TOR CAJ CAJ C 0 1 N N N N N N 17.425 0.479 11.318 2.517 -1.983 -1.592 CAJ TOR 11
TOR OAA OAA O 0 1 N N N N N N 17.956 2.664 10.422 2.859 -1.586 0.776 OAA TOR 12
TOR CAB CAB C 0 1 N N R N N N 17.501 4.000 10.758 2.586 -0.302 1.350 CAB TOR 13
TOR CAC CAC C 0 1 N N N N N N 18.536 4.592 11.715 1.351 -0.302 2.227 CAC TOR 14
TOR OAH OAH O 0 1 N N N N N N 18.350 4.035 13.050 0.199 -0.632 1.453 OAH TOR 15
TOR CAL CAL C 0 1 N N S N N N 17.157 4.416 13.719 -0.075 0.252 0.387 CAL TOR 16
TOR CAM CAM C 0 1 N N N N N N 16.926 3.370 14.838 -1.311 -0.251 -0.362 CAM TOR 17
TOR OAN OAN O 0 1 N N N N N N 15.708 3.569 15.533 -2.437 -0.244 0.518 OAN TOR 18
TOR SAO SAO S 0 1 N N N N N N 15.343 2.760 16.737 -3.728 -0.729 -0.125 SAO TOR 19
TOR OAS OAS O 0 1 N N N N N N 16.192 3.256 17.852 -4.765 -0.468 0.812 OAS TOR 20
TOR OAI OAI O 0 1 N N N N N N 13.885 2.984 16.895 -3.732 -0.218 -1.451 OAI TOR 21
TOR NAP NAP N 0 1 N N N N N N 15.701 1.237 16.404 -3.622 -2.376 -0.258 NAP TOR 22
TOR HAT HAT H 0 1 N N N N N N 17.347 8.485 14.298 0.883 4.225 0.816 HAT TOR 23
TOR HATA HATA H 0 0 N N N N N N 18.128 7.679 12.896 1.881 2.782 1.119 HATA TOR 24
TOR HATB HATB H 0 0 N N N N N N 16.564 8.537 12.682 2.003 3.639 -0.437 HATB TOR 25
TOR HAV HAV H 0 1 N N N N N N 15.544 6.954 15.654 -0.503 3.977 -1.552 HAV TOR 26
TOR HAVA HAVA H 0 0 N N N N N N 14.727 7.838 14.321 -1.683 2.694 -1.193 HAVA TOR 27
TOR HAVB HAVB H 0 0 N N N N N N 14.478 6.069 14.511 -1.321 3.938 0.028 HAVB TOR 28
TOR HAK HAK H 0 1 N N N N N N 15.036 4.192 13.201 1.156 -0.466 -1.288 HAK TOR 29
TOR HAG HAG H 0 1 N N N N N N 15.345 4.195 10.729 2.576 1.672 0.367 HAG TOR 30
TOR HAD HAD H 0 1 N N N N N N 14.981 1.411 9.666 5.449 -1.472 0.150 HAD TOR 31
TOR HADA HADA H 0 0 N N N N N N 16.211 2.294 8.700 4.773 -3.005 -0.453 HADA TOR 32
TOR HADB HADB H 0 0 N N N N N N 16.387 0.528 8.981 5.238 -1.725 -1.599 HADB TOR 33
TOR HAJ HAJ H 0 1 N N N N N N 17.561 -0.273 10.526 2.628 -1.446 -2.534 HAJ TOR 34
TOR HAJA HAJA H 0 0 N N N N N N 18.395 0.693 11.790 2.811 -3.023 -1.731 HAJA TOR 35
TOR HAJB HAJB H 0 0 N N N N N N 16.726 0.093 12.074 1.477 -1.939 -1.269 HAJB TOR 36
TOR HAB HAB H 0 1 N N N N N N 17.404 4.684 9.902 3.441 0.023 1.942 HAB TOR 37
TOR HAC HAC H 0 1 N N N N N N 19.547 4.348 11.356 1.473 -1.036 3.024 HAC TOR 38
TOR HACA HACA H 0 0 N N N N N N 18.410 5.684 11.756 1.220 0.687 2.666 HACA TOR 39
TOR HAM HAM H 0 1 N N N N N N 16.904 2.371 14.379 -1.510 0.400 -1.212 HAM TOR 40
TOR HAMA HAMA H 0 0 N N N N N N 17.745 3.474 15.565 -1.133 -1.267 -0.716 HAMA TOR 41
TOR HNAP HNAP H 0 0 N N N N N N 15.776 1.121 15.414 -4.425 -2.918 -0.221 HNAP TOR 42
TOR HNAA HNAA H 0 0 N N N N N N 16.571 0.998 16.834 -2.756 -2.798 -0.374 HNAA TOR 43
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TOR CAT CAU SING N N 1
TOR CAU CAV SING N N 2
TOR CAU OAR SING N N 3
TOR CAU OAQ SING N N 4
TOR OAR CAL SING N N 5
TOR OAQ CAK SING N N 6
TOR CAK CAG SING N N 7
TOR CAK CAL SING N N 8
TOR CAG OAF SING N N 9
TOR CAG CAB SING N N 10
TOR OAF CAE SING N N 11
TOR CAE CAD SING N N 12
TOR CAE CAJ SING N N 13
TOR CAE OAA SING N N 14
TOR OAA CAB SING N N 15
TOR CAB CAC SING N N 16
TOR CAC OAH SING N N 17
TOR OAH CAL SING N N 18
TOR CAL CAM SING N N 19
TOR CAM OAN SING N N 20
TOR OAN SAO SING N N 21
TOR SAO OAS DOUB N N 22
TOR SAO OAI DOUB N N 23
TOR SAO NAP SING N N 24
TOR CAT HAT SING N N 25
TOR CAT HATA SING N N 26
TOR CAT HATB SING N N 27
TOR CAV HAV SING N N 28
TOR CAV HAVA SING N N 29
TOR CAV HAVB SING N N 30
TOR CAK HAK SING N N 31
TOR CAG HAG SING N N 32
TOR CAD HAD SING N N 33
TOR CAD HADA SING N N 34
TOR CAD HADB SING N N 35
TOR CAJ HAJ SING N N 36
TOR CAJ HAJA SING N N 37
TOR CAJ HAJB SING N N 38
TOR CAB HAB SING N N 39
TOR CAC HAC SING N N 40
TOR CAC HACA SING N N 41
TOR CAM HAM SING N N 42
TOR CAM HAMA SING N N 43
TOR NAP HNAP SING N N 44
TOR NAP HNAA SING N N 45
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TOR SMILES ACDLabs 10.04 O=S(=O)(OCC23OCC1OC(OC1C3OC(O2)(C)C)(C)C)N
TOR SMILES_CANONICAL CACTVS 3.341 CC1(C)O[C@@H]2CO[C@@]3(CO[S](N)(=O)=O)OC(C)(C)O[C@H]3[C@@H]2O1
TOR SMILES CACTVS 3.341 CC1(C)O[CH]2CO[C]3(CO[S](N)(=O)=O)OC(C)(C)O[CH]3[CH]2O1
TOR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC1(O[C@@H]2CO[C@@]3([C@H]([C@@H]2O1)OC(O3)(C)C)COS(=O)(=O)N)C
TOR SMILES "OpenEye OEToolkits" 1.5.0 CC1(OC2COC3(C(C2O1)OC(O3)(C)C)COS(=O)(=O)N)C
TOR InChI InChI 1.03 InChI=1S/C12H21NO8S/c1-10(2)18-7-5-16-12(6-17-22(13,14)15)9(8(7)19-10)20-11(3,4)21-12/h7-9H,5-6H2,1-4H3,(H2,13,14,15)/t7-,8-,9+,12+/m1/s1
TOR InChIKey InChI 1.03 KJADKKWYZYXHBB-XBWDGYHZSA-N
#
_pdbx_chem_comp_identifier.comp_id TOR
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 10.04
_pdbx_chem_comp_identifier.identifier
"[(3aS,5aR,8aR,8bS)-2,2,7,7-tetramethyltetrahydro-3aH-bis[1,3]dioxolo[4,5-b:4',5'-d]pyran-3a-yl]methyl sulfamate (non-preferred name)"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TOR 'Create component' 2009-06-03 PDBJ
TOR 'Modify descriptor' 2011-06-04 RCSB
TOR 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id TOR
_pdbx_chem_comp_synonyms.name topiramate
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id TOR
_pdbe_chem_comp_drugbank_details.drugbank_id DB00273
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Topiramate
_pdbe_chem_comp_drugbank_details.description
'Topiramate is a anti-epileptic drug used to manage seizures and prevent migraines.[A175249] It was initially approved by the FDA in 1996. In 2004, topiramate was approved for the prevention of migraine in adults.[A188309,L10544,L43478] Since 2012, the extended-release formulation has been approved in combination with [phentermine] for chronic weight management therapy in adults.[L10550]   Characteristics that distinguish topiramate from other antiepileptic drugs are a monosaccharide chemical structure containing a sulfamate, and 40% of its mass accounted for by oxygen.[A175249] Interestingly, topiramate was discovered by chance when attempts were made to formulate a novel antidiabetic drug.[A188330]'
_pdbe_chem_comp_drugbank_details.cas_number 97240-79-4
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'A seizure is an abnormal and unregulated electrical discharge occurring in the brain. This leads to transient interruption in brain function, manifested by reduced alertness, abnormal sensations, and focal involuntary movements or convulsions. Several types of seizures exist, with common types including tonic-clonic seizures and partial onset seizures.[L5548]  The exact mechanisms by which topiramate exerts pharmacological actions on seizures and migraines are currently not fully characterized.[A188336,L10544]  Several properties of this drug, however, are likely to contribute to its therapeutic effects. Topiramate has been observed to exert actions on voltage-dependent sodium channels, GABA receptors, and glutamate receptors.[A175249,L10544]   Topiramate stimulates GABA-A receptor activity at brain non-benzodiazepine receptor sites and reduces glutamate activity at both AMPA and kainate receptors. Normally, GABA-A receptors are inhibitory and glutaminergic receptors are stimulatory for neuronal activity.[A175243,T752] By increasing GABA activity and inhibiting glutamate activity, topiramate blocks neuronal excitability, preventing seizures and migraines.[A188333,A188309,L10544] Additionally, it blocks the voltage-dependent sodium channels, further blocking seizure activity.[A175243] Topiramate has been shown to inhibit various carbonic anhydrase isozymes, but the clinical significance of this is unknown at this time.[A10342,A10348,A20066,L10544]'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
TOR topiramate wwPDB ?
TOR '2,3:4,5-bis-O-(1-methylethylidene)-β-D-fructopyranose sulfamate' DrugBank ?
TOR '2,3:4,5-di-O-isopropylidene-β-D-fructopyranose sulfamate' DrugBank ?
TOR Topiramate DrugBank ?
TOR Topiramatum DrugBank ?
TOR TPM DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id TOR
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00273
_pdbe_chem_comp_drugbank_classification.parent Dioxolopyrans
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Dioxolopyrans
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as dioxolopyrans. These are compounds containing a dioxolopyran moiety, which consists of a dioxole ring fused to a pyran ring.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
TOR DB00273 'Gamma-aminobutyric acid receptor subunit alpha-1' Humans P14867 yes 1
TOR DB00273 'Sodium channel protein type 1 subunit alpha' Humans P35498 yes 2
TOR DB00273 'Sodium channel protein type 10 subunit alpha' Humans Q9Y5Y9 yes 3
TOR DB00273 'Sodium channel protein type 11 subunit alpha' Humans Q9UI33 yes 4
TOR DB00273 'Sodium channel protein type 2 subunit alpha' Humans Q99250 yes 5
TOR DB00273 'Sodium channel protein type 3 subunit alpha' Humans Q9NY46 yes 6
TOR DB00273 'Sodium channel protein type 4 subunit alpha' Humans P35499 yes 7
TOR DB00273 'Sodium channel protein type 5 subunit alpha' Humans Q14524 yes 8
TOR DB00273 'Sodium channel protein type 7 subunit alpha' Humans Q01118 yes 9
TOR DB00273 'Sodium channel protein type 8 subunit alpha' Humans Q9UQD0 yes 10
TOR DB00273 'Sodium channel protein type 9 subunit alpha' Humans Q15858 yes 11
TOR DB00273 'Glutamate receptor ionotropic, kainate 1' Humans P39086 yes 12
TOR DB00273 'Glutamate receptor ionotropic, kainate 2' Humans Q13002 yes 13
TOR DB00273 'Glutamate receptor ionotropic, kainate 3' Humans Q13003 yes 14
TOR DB00273 'Glutamate receptor ionotropic, kainate 4' Humans Q16099 yes 15
TOR DB00273 'Glutamate receptor ionotropic, kainate 5' Humans Q16478 yes 16
TOR DB00273 'Carbonic anhydrase 2' Humans P00918 yes 17
TOR DB00273 'Carbonic anhydrase 4' Humans P22748 yes 18
TOR DB00273 'Voltage-dependent L-type calcium channel subunit alpha-1C' Humans Q13936 yes 19
TOR DB00273 'Voltage-dependent L-type calcium channel subunit alpha-1D' Humans Q01668 yes 20
TOR DB00273 'Voltage-dependent L-type calcium channel subunit alpha-1F' Humans O60840 yes 21
TOR DB00273 'Voltage-dependent L-type calcium channel subunit alpha-1S' Humans Q13698 yes 22
TOR DB00273 'Voltage-dependent L-type calcium channel subunit beta-1' Humans Q02641 yes 23
TOR DB00273 'Voltage-dependent L-type calcium channel subunit beta-2' Humans Q08289 yes 24
TOR DB00273 'Voltage-dependent L-type calcium channel subunit beta-3' Humans P54284 yes 25
TOR DB00273 'Voltage-dependent L-type calcium channel subunit beta-4' Humans O00305 yes 26
TOR DB00273 'Glutamate receptor ionotropic, kainate 1' Humans P39086 unknown 27
TOR DB00273 'Carbonic anhydrase 1' Humans P00915 unknown 28
TOR DB00273 'Carbonic anhydrase 3' Humans P07451 unknown 29
TOR DB00273 'Voltage-dependent R-type calcium channel subunit alpha-1E' Humans Q15878 unknown 30
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
TOR CAT C 9.447 -3.142 1
TOR CAU C 9.604 -1.650 2
TOR CAV C 10.975 -2.260 3
TOR OAR O 10.212 -0.289 4
TOR OAQ O 8.121 -1.496 5
TOR CAK C 7.807 -0.038 6
TOR CAG C 6.508 0.712 7
TOR OAF O 5.089 0.255 8
TOR CAE C 4.213 1.462 9
TOR CAD C 3.000 2.344 10
TOR CAJ C 3.000 0.580 11
TOR OAA O 5.089 2.669 12
TOR CAB C 6.508 2.212 13
TOR CAC C 7.807 2.962 14
TOR OAH O 9.106 2.212 15
TOR CAL C 9.106 0.712 16
TOR CAM C 10.405 1.462 17
TOR OAN O 11.704 0.712 18
TOR SAO S 13.004 1.462 19
TOR OAS O 13.754 0.163 20
TOR OAI O 12.254 2.761 21
TOR NAP N 14.303 2.212 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
TOR CAT CAU SINGLE NONE 1
TOR CAU CAV SINGLE NONE 2
TOR CAU OAR SINGLE NONE 3
TOR CAU OAQ SINGLE NONE 4
TOR OAR CAL SINGLE NONE 5
TOR OAQ CAK SINGLE NONE 6
TOR CAK CAG SINGLE NONE 7
TOR CAK CAL SINGLE NONE 8
TOR CAG OAF SINGLE NONE 9
TOR CAG CAB SINGLE NONE 10
TOR OAF CAE SINGLE NONE 11
TOR CAE CAD SINGLE NONE 12
TOR CAE CAJ SINGLE NONE 13
TOR CAE OAA SINGLE NONE 14
TOR OAA CAB SINGLE NONE 15
TOR CAB CAC SINGLE NONE 16
TOR CAC OAH SINGLE NONE 17
TOR OAH CAL SINGLE NONE 18
TOR CAL CAM SINGLE BEGINDASH 19
TOR CAM OAN SINGLE NONE 20
TOR OAN SAO SINGLE NONE 21
TOR SAO OAS DOUBLE NONE 22
TOR SAO OAI DOUBLE NONE 23
TOR SAO NAP SINGLE NONE 24
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
TOR MurckoScaffold S1 scaffold 'C1OC2OC[C@H]3OCO[C@H]3[C@@H]2O1' InChI=1S/C7H10O5/c1-4-5(10-2-9-4)6-7(8-1)12-3-11-6/h4-7H,1-3H2/t4-,5-,6+,7+/m1/s1 SMQYRDCUAAJCHF-JWXFUTCRSA-N
TOR pyranose F1 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
TOR CAU S1 1
TOR OAR S1 1
TOR OAQ S1 1
TOR CAK S1 1
TOR CAG S1 1
TOR OAF S1 1
TOR CAE S1 1
TOR OAA S1 1
TOR CAB S1 1
TOR CAC S1 1
TOR OAH S1 1
TOR CAL S1 1
TOR CAB F1 1
TOR CAC F1 1
TOR OAH F1 1
TOR CAL F1 1
TOR CAK F1 1
TOR CAG F1 1
TOR OAR F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id TOR
_pdbe_chem_comp_rdkit_properties.exactmw 339.099
_pdbe_chem_comp_rdkit_properties.amw 339.366
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 43
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 158.348
_pdbe_chem_comp_rdkit_properties.tpsa 115.540
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.395
_pdbe_chem_comp_rdkit_properties.CrippenMR 71.604
_pdbe_chem_comp_rdkit_properties.chi0v 10.938
_pdbe_chem_comp_rdkit_properties.chi1v 6.543
_pdbe_chem_comp_rdkit_properties.chi2v 2.599
_pdbe_chem_comp_rdkit_properties.chi3v 2.599
_pdbe_chem_comp_rdkit_properties.chi4v 1.890
_pdbe_chem_comp_rdkit_properties.chi0n 31.121
_pdbe_chem_comp_rdkit_properties.chi1n 15.572
_pdbe_chem_comp_rdkit_properties.chi2n 2.305
_pdbe_chem_comp_rdkit_properties.chi3n 2.305
_pdbe_chem_comp_rdkit_properties.chi4n 1.675
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.330
_pdbe_chem_comp_rdkit_properties.kappa1 4.640
_pdbe_chem_comp_rdkit_properties.kappa2 4.835
_pdbe_chem_comp_rdkit_properties.kappa3 3.017
_pdbe_chem_comp_rdkit_properties.Phi 1.020
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
TOR UniChem DrugBank DB00273
TOR UniChem 'Guide to Pharmacology' 6849
TOR UniChem 'PubChem DOTF' 12013555
TOR UniChem 'KEGG LIGAND' C07502
TOR UniChem ChEBI 63631
TOR UniChem NIH SAM001246601
TOR UniChem ZINC ZINC000095616603
TOR UniChem eMolecules 594585
TOR UniChem atlas topiramate
TOR UniChem fdasrs 0H73WJJ391
TOR UniChem PharmGKB PA451728
TOR UniChem HMDB HMDB0005034
TOR UniChem Selleck Topiramate
TOR UniChem LINCS LSM-5435
TOR UniChem Nikkaji J345.989F
TOR UniChem BindingDb 10887
TOR UniChem DrugCentral 2706
TOR UniChem BRENDA 166019
TOR UniChem BRENDA 191445
TOR UniChem BRENDA 227498
TOR UniChem DailyMed TOPIRAMATE
TOR UniChem ClinicalTrials MCN-4853
TOR UniChem ClinicalTrials QUDEXY
TOR UniChem ClinicalTrials RWJ-17021
TOR UniChem ClinicalTrials RWJ-17021-000
TOR UniChem ClinicalTrials TOPAMAX
TOR UniChem ClinicalTrials TOPIMAX
TOR UniChem ClinicalTrials TOPIRAMATE
TOR UniChem ClinicalTrials TOPOMAX
TOR UniChem ClinicalTrials USL-255
TOR UniChem ClinicalTrials USL255
TOR UniChem rxnorm QUDEXY
TOR UniChem rxnorm TOPAMAX
TOR UniChem rxnorm TOPIRAMATE
TOR UniChem MedChemExpress HY-B0122
TOR UniChem 'Probes And Drugs' PD000722
TOR UniChem CCDC SEQKAA
TOR UniChem eMolecules 29547217
TOR UniChem eMolecules 29548990
TOR UniChem SureChEMBL SCHEMBL34631
TOR UniChem 'PubChem TPHARMA' 14777895
TOR UniChem 'PubChem TPHARMA' 14924784
TOR UniChem PubChem 5284627
TOR UniChem Mcule MCULE-9403222429
TOR UniChem ACTor 97240-79-4
TOR UniChem 'EPA CompTox Dashboard' DTXSID8023688
TOR UniChem ChemicalBook CB7402630
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
TOR CAT 2.179 2.897 0.625 ETKDGv3 1
TOR CAU 1.157 2.263 -0.327 ETKDGv3 2
TOR CAV 0.829 3.257 -1.449 ETKDGv3 3
TOR OAR 1.716 1.099 -0.901 ETKDGv3 4
TOR OAQ -0.019 1.970 0.397 ETKDGv3 5
TOR CAK -0.308 0.627 0.157 ETKDGv3 6
TOR CAG -1.545 0.529 -0.765 ETKDGv3 7
TOR OAF -2.703 0.765 -0.023 ETKDGv3 8
TOR CAE -3.420 -0.452 -0.000 ETKDGv3 9
TOR CAD -3.613 -0.884 1.456 ETKDGv3 10
TOR CAJ -4.784 -0.238 -0.667 ETKDGv3 11
TOR OAA -2.727 -1.472 -0.686 ETKDGv3 12
TOR CAB -1.716 -0.832 -1.397 ETKDGv3 13
TOR CAC -0.429 -1.660 -1.366 ETKDGv3 14
TOR OAH 0.695 -0.828 -1.581 ETKDGv3 15
TOR CAL 0.955 0.012 -0.460 ETKDGv3 16
TOR CAM 1.795 -0.754 0.590 ETKDGv3 17
TOR OAN 2.961 -1.255 -0.021 ETKDGv3 18
TOR SAO 3.887 -2.055 1.152 ETKDGv3 19
TOR OAS 4.295 -1.096 2.236 ETKDGv3 20
TOR OAI 3.103 -3.191 1.749 ETKDGv3 21
TOR NAP 5.309 -2.685 0.398 ETKDGv3 22
TOR HAT 3.132 3.100 0.092 ETKDGv3 23
TOR HATA 1.785 3.852 1.036 ETKDGv3 24
TOR HATB 2.391 2.219 1.477 ETKDGv3 25
TOR HAV 1.756 3.570 -1.974 ETKDGv3 26
TOR HAVA 0.327 4.158 -1.035 ETKDGv3 27
TOR HAVB 0.156 2.791 -2.197 ETKDGv3 28
TOR HAK -0.548 0.134 1.126 ETKDGv3 29
TOR HAG -1.475 1.291 -1.569 ETKDGv3 30
TOR HAD -4.151 -0.097 2.027 ETKDGv3 31
TOR HADA -2.625 -1.054 1.935 ETKDGv3 32
TOR HADB -4.194 -1.830 1.507 ETKDGv3 33
TOR HAJ -5.372 -1.181 -0.659 ETKDGv3 34
TOR HAJA -5.357 0.551 -0.134 ETKDGv3 35
TOR HAJB -4.643 0.081 -1.722 ETKDGv3 36
TOR HAB -2.045 -0.709 -2.455 ETKDGv3 37
TOR HAC -0.349 -2.230 -0.416 ETKDGv3 38
TOR HACA -0.470 -2.416 -2.179 ETKDGv3 39
TOR HAM 1.198 -1.584 1.023 ETKDGv3 40
TOR HAMA 2.058 -0.061 1.418 ETKDGv3 41
TOR HNAP 5.818 -3.241 1.121 ETKDGv3 42
TOR HNAA 4.992 -3.359 -0.334 ETKDGv3 43
#