data_TLW
#
_chem_comp.id TLW
_chem_comp.name "(2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-4,5-bis(oxidanyl)oxane-2-carboxylic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H14 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-01-11
_chem_comp.pdbx_modified_date 2021-04-30
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 222.193
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TLW
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7BGL
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TLW C1 C1 C 0 1 N N N N N N 108.456 135.200 264.236 -2.329 1.637 -0.024 C1 TLW 1
TLW C2 C2 C 0 1 N N R N N N 109.801 135.668 264.788 -1.438 0.542 0.504 C2 TLW 2
TLW C3 C3 C 0 1 N N N N N N 110.414 137.016 264.454 -1.967 -0.816 0.036 C3 TLW 3
TLW C4 C4 C 0 1 N N R N N N 111.919 136.916 264.660 -1.024 -1.919 0.526 C4 TLW 4
TLW C5 C5 C 0 1 N N R N N N 112.365 135.461 264.518 0.389 -1.635 0.007 C5 TLW 5
TLW C6 C6 C 0 1 N N R N N N 111.680 134.578 265.571 0.827 -0.245 0.477 C6 TLW 6
TLW C7 C7 C 0 1 N N R N N N 112.518 134.516 266.848 2.214 0.071 -0.088 C7 TLW 7
TLW C8 C8 C 0 1 N N N N N N 111.591 134.481 268.064 2.651 1.460 0.382 C8 TLW 8
TLW O11 O1 O 0 1 N N N N N N 107.577 136.044 263.920 -1.895 2.438 -0.818 O11 TLW 9
TLW O12 O2 O 0 1 N N N N N N 108.227 133.970 264.097 -3.605 1.719 0.384 O12 TLW 10
TLW O4 O3 O 0 1 N N N N N N 112.246 137.386 265.938 -1.469 -3.184 0.032 O4 TLW 11
TLW O5 O4 O 0 1 N N N N N N 113.753 135.394 264.670 0.391 -1.679 -1.421 O5 TLW 12
TLW O6 O5 O 0 1 N N N N N N 110.410 135.078 265.899 -0.110 0.730 0.013 O6 TLW 13
TLW O7 O6 O 0 1 N N N N N N 113.306 133.359 266.835 3.150 -0.905 0.375 O7 TLW 14
TLW O8 O7 O 0 1 N N N N N N 112.346 134.252 269.221 3.892 1.803 -0.238 O8 TLW 15
TLW H1 H1 H 0 1 N N N N N N 110.397 135.115 264.047 -1.431 0.573 1.594 H1 TLW 16
TLW H31 H2 H 0 1 N N N N N N 109.998 137.789 265.116 -2.963 -0.980 0.447 H31 TLW 17
TLW H32 H3 H 0 1 N N N N N N 110.197 137.275 263.407 -2.013 -0.833 -1.053 H32 TLW 18
TLW H4 H4 H 0 1 N N N N N N 112.423 137.516 263.888 -1.017 -1.936 1.616 H4 TLW 19
TLW H5 H5 H 0 1 N N N N N N 112.073 135.102 263.520 1.078 -2.385 0.396 H5 TLW 20
TLW H6 H6 H 0 1 N N N N N N 111.592 133.560 265.164 0.864 -0.224 1.566 H6 TLW 21
TLW H7 H7 H 0 1 N N N N N N 113.148 135.416 266.905 2.176 0.051 -1.177 H7 TLW 22
TLW H81 H8 H 0 1 N N N N N N 111.067 135.444 268.153 1.892 2.192 0.106 H81 TLW 23
TLW H82 H9 H 0 1 N N N N N N 110.855 133.673 267.941 2.774 1.456 1.465 H82 TLW 24
TLW H2 H10 H 0 1 N N N N N N 107.353 133.848 263.745 -4.137 2.439 0.018 H2 TLW 25
TLW H3 H11 H 0 1 N N N N N N 113.185 137.324 266.068 -2.361 -3.425 0.316 H3 TLW 26
TLW H8 H12 H 0 1 N N N N N N 114.038 134.492 264.583 0.119 -2.531 -1.789 H8 TLW 27
TLW HO7 H13 H 0 1 N N N N N N 113.827 133.321 267.629 3.235 -0.942 1.337 HO7 TLW 28
TLW HO8 H14 H 0 1 N N N N N N 111.770 134.230 269.976 4.230 2.674 0.014 HO8 TLW 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TLW O11 C1 DOUB N N 1
TLW O12 C1 SING N N 2
TLW C1 C2 SING N N 3
TLW C3 C4 SING N N 4
TLW C3 C2 SING N N 5
TLW C5 C4 SING N N 6
TLW C5 O5 SING N N 7
TLW C5 C6 SING N N 8
TLW C4 O4 SING N N 9
TLW C2 O6 SING N N 10
TLW C6 O6 SING N N 11
TLW C6 C7 SING N N 12
TLW O7 C7 SING N N 13
TLW C7 C8 SING N N 14
TLW C8 O8 SING N N 15
TLW C2 H1 SING N N 16
TLW C3 H31 SING N N 17
TLW C3 H32 SING N N 18
TLW C4 H4 SING N N 19
TLW C5 H5 SING N N 20
TLW C6 H6 SING N N 21
TLW C7 H7 SING N N 22
TLW C8 H81 SING N N 23
TLW C8 H82 SING N N 24
TLW O12 H2 SING N N 25
TLW O4 H3 SING N N 26
TLW O5 H8 SING N N 27
TLW O7 HO7 SING N N 28
TLW O8 HO8 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TLW InChI InChI 1.03 InChI=1S/C8H14O7/c9-2-4(11)7-6(12)3(10)1-5(15-7)8(13)14/h3-7,9-12H,1-2H2,(H,13,14)/t3-,4-,5-,6-,7-/m1/s1
TLW InChIKey InChI 1.03 ANWKOKWAJKGXFO-NYMZXIIRSA-N
TLW SMILES_CANONICAL CACTVS 3.385 OC[C@@H](O)[C@H]1O[C@H](C[C@@H](O)[C@H]1O)C(O)=O
TLW SMILES CACTVS 3.385 OC[CH](O)[CH]1O[CH](C[CH](O)[CH]1O)C(O)=O
TLW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C1[C@H]([C@H]([C@H](O[C@H]1C(=O)O)[C@@H](CO)O)O)O
TLW SMILES "OpenEye OEToolkits" 2.0.7 C1C(C(C(OC1C(=O)O)C(CO)O)O)O
#
_pdbx_chem_comp_identifier.comp_id TLW
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
"(2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-4,5-bis(oxidanyl)oxane-2-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TLW 'Create component' 2021-01-11 PDBE
TLW 'Initial release' 2021-05-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
TLW C1 C 5.104 -0.892 1
TLW C2 C 6.404 -0.142 2
TLW C3 C 6.404 1.357 3
TLW C4 C 7.702 2.107 4
TLW C5 C 9.002 1.357 5
TLW C6 C 9.002 -0.142 6
TLW C7 C 10.301 -0.892 7
TLW C8 C 10.301 -2.393 8
TLW O11 O 3.805 -0.142 9
TLW O12 O 5.104 -2.393 10
TLW O4 O 7.702 3.607 11
TLW O5 O 10.301 2.107 12
TLW O6 O 7.702 -0.892 13
TLW O7 O 11.600 -0.142 14
TLW O8 O 11.600 -3.143 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
TLW O11 C1 DOUBLE NONE 1
TLW O12 C1 SINGLE NONE 2
TLW C2 C1 SINGLE BEGINWEDGE 3
TLW C3 C4 SINGLE NONE 4
TLW C3 C2 SINGLE NONE 5
TLW C5 C4 SINGLE NONE 6
TLW C5 O5 SINGLE BEGINWEDGE 7
TLW C5 C6 SINGLE NONE 8
TLW C4 O4 SINGLE BEGINWEDGE 9
TLW C2 O6 SINGLE NONE 10
TLW C6 O6 SINGLE BEGINWEDGE 11
TLW C6 C7 SINGLE NONE 12
TLW C7 O7 SINGLE BEGINDASH 13
TLW C7 C8 SINGLE NONE 14
TLW C8 O8 SINGLE NONE 15
#
_pdbe_chem_comp_substructure.comp_id TLW
_pdbe_chem_comp_substructure.substructure_name MurckoScaffold
_pdbe_chem_comp_substructure.id S1
_pdbe_chem_comp_substructure.substructure_type scaffold
_pdbe_chem_comp_substructure.substructure_smiles C1CCOCC1
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C5H10O/c1-2-4-6-5-3-1/h1-5H2
_pdbe_chem_comp_substructure.substructure_inchikeys DHXVGJBLRPWPCS-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
TLW C2 S1 1
TLW C3 S1 1
TLW C4 S1 1
TLW C5 S1 1
TLW C6 S1 1
TLW O6 S1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id TLW
_pdbe_chem_comp_rdkit_properties.exactmw 222.074
_pdbe_chem_comp_rdkit_properties.amw 222.193
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.875
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 105.637
_pdbe_chem_comp_rdkit_properties.tpsa 127.450
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.696
_pdbe_chem_comp_rdkit_properties.CrippenMR 46.020
_pdbe_chem_comp_rdkit_properties.chi0v 6.858
_pdbe_chem_comp_rdkit_properties.chi1v 3.383
_pdbe_chem_comp_rdkit_properties.chi2v 1.328
_pdbe_chem_comp_rdkit_properties.chi3v 1.328
_pdbe_chem_comp_rdkit_properties.chi4v 0.725
_pdbe_chem_comp_rdkit_properties.chi0n 20.858
_pdbe_chem_comp_rdkit_properties.chi1n 9.924
_pdbe_chem_comp_rdkit_properties.chi2n 1.328
_pdbe_chem_comp_rdkit_properties.chi3n 1.328
_pdbe_chem_comp_rdkit_properties.chi4n 0.725
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.730
_pdbe_chem_comp_rdkit_properties.kappa1 3.144
_pdbe_chem_comp_rdkit_properties.kappa2 4.862
_pdbe_chem_comp_rdkit_properties.kappa3 2.639
_pdbe_chem_comp_rdkit_properties.Phi 1.019
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
TLW UniChem 'PubChem TPHARMA' 16155852
TLW UniChem PubChem 11085373
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
TLW C1 -1.480 2.594 -0.514 ETKDGv3 1
TLW C2 -1.131 1.243 0.033 ETKDGv3 2
TLW C3 -2.204 0.224 -0.389 ETKDGv3 3
TLW C4 -1.819 -1.177 0.100 ETKDGv3 4
TLW C5 -0.374 -1.509 -0.323 ETKDGv3 5
TLW C6 0.563 -0.359 0.122 ETKDGv3 6
TLW C7 2.033 -0.635 -0.284 ETKDGv3 7
TLW C8 2.983 0.495 0.150 ETKDGv3 8
TLW O11 -2.048 3.446 0.221 ETKDGv3 9
TLW O12 -1.215 2.895 -1.847 ETKDGv3 10
TLW O4 -2.719 -2.119 -0.422 ETKDGv3 11
TLW O5 -0.301 -1.669 -1.719 ETKDGv3 12
TLW O6 0.141 0.863 -0.465 ETKDGv3 13
TLW O7 2.482 -1.869 0.221 ETKDGv3 14
TLW O8 2.955 0.658 1.542 ETKDGv3 15
TLW H1 -1.106 1.321 1.146 ETKDGv3 16
TLW H31 -2.302 0.216 -1.498 ETKDGv3 17
TLW H32 -3.188 0.508 0.046 ETKDGv3 18
TLW H4 -1.882 -1.184 1.215 ETKDGv3 19
TLW H5 -0.060 -2.449 0.190 ETKDGv3 20
TLW H6 0.533 -0.286 1.235 ETKDGv3 21
TLW H7 2.084 -0.690 -1.394 ETKDGv3 22
TLW H81 4.017 0.243 -0.175 ETKDGv3 23
TLW H82 2.687 1.446 -0.346 ETKDGv3 24
TLW H2 -1.460 3.798 -2.234 ETKDGv3 25
TLW H3 -2.586 -2.957 0.094 ETKDGv3 26
TLW H8 -0.576 -2.602 -1.918 ETKDGv3 27
TLW HO7 2.389 -1.843 1.209 ETKDGv3 28
TLW HO8 3.583 1.399 1.745 ETKDGv3 29
#