data_TEF
#
_chem_comp.id TEF
_chem_comp.name 4-(2H-tetrazol-2-yl)-L-phenylalanine
_chem_comp.type "L-peptide linking"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C10 H11 N5 O2"
_chem_comp.mon_nstd_parent_comp_id PHE
_chem_comp.pdbx_synonyms p-(2-tetrazolyl)-phenylalanine
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-06-03
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 233.227
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TEF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3N2Y
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TEF CA CA C 0 1 N N S N N N -23.596 -38.650 -14.628 3.064 -0.030 -0.460 CA TEF 1
TEF N N N 0 1 N N N N N N -23.723 -38.074 -15.955 2.792 -1.391 -0.939 N TEF 2
TEF OXT OXT O 0 1 N N N N N N -23.043 -37.715 -12.536 5.081 1.372 -0.204 OXT TEF 3
TEF CB CB C 0 1 N N N N N N -22.244 -39.323 -14.493 2.329 0.202 0.862 CB TEF 4
TEF N2 N2 N 0 1 Y N N N N N -21.436 -43.824 -17.888 -3.273 0.015 -0.031 N2 TEF 5
TEF O O O 0 1 N Y N N N N -24.424 -36.566 -13.834 5.254 -0.830 -0.115 O TEF 6
TEF CG CG C 0 1 Y N N N N N -22.091 -40.531 -15.386 0.842 0.152 0.625 CG TEF 7
TEF N3 N3 N 0 1 Y N N N N N -22.370 -44.840 -18.064 -4.103 1.099 -0.361 N3 TEF 8
TEF CD1 CD1 C 0 1 Y N N N N N -20.905 -40.676 -16.096 0.167 -1.050 0.727 CD1 TEF 9
TEF N4 N4 N 0 1 Y N N N N N -20.523 -45.237 -19.260 -5.240 -0.701 -0.235 N4 TEF 10
TEF CE1 CE1 C 0 1 Y N N N N N -20.694 -41.777 -16.919 -1.196 -1.099 0.510 CE1 TEF 11
TEF N5 N5 N 0 1 Y N N N N N -20.265 -44.022 -18.607 -4.024 -1.031 0.023 N5 TEF 12
TEF CZ CZ C 0 1 Y N N N N N -21.648 -42.776 -17.080 -1.889 0.062 0.190 CZ TEF 13
TEF C7 C7 C 0 1 Y N N N N N -21.762 -45.694 -18.926 -5.314 0.605 -0.475 C7 TEF 14
TEF CE2 CE2 C 0 1 Y N N N N N -22.836 -42.601 -16.349 -1.208 1.267 0.089 CE2 TEF 15
TEF CD2 CD2 C 0 1 Y N N N N N -23.075 -41.505 -15.516 0.154 1.311 0.312 CD2 TEF 16
TEF C C C 0 1 N N N N N N -23.696 -37.569 -13.594 4.547 0.141 -0.247 C TEF 17
TEF HA HA H 0 1 N N N N N N -24.401 -39.385 -14.481 2.718 0.692 -1.199 HA TEF 18
TEF H H H 0 1 N N N N N N -24.615 -37.631 -16.042 3.105 -2.079 -0.270 H TEF 19
TEF H2 H2 H 0 1 N Y N N N N -23.000 -37.398 -16.095 1.813 -1.511 -1.151 H2 TEF 20
TEF HXT HXT H 0 1 N Y N N N N -23.187 -36.967 -11.969 6.036 1.431 -0.066 HXT TEF 21
TEF HB2 HB2 H 0 1 N N N N N N -21.467 -38.593 -14.764 2.610 -0.574 1.575 HB2 TEF 22
TEF HB3 HB3 H 0 1 N N N N N N -22.123 -39.648 -13.449 2.601 1.179 1.263 HB3 TEF 23
TEF HD1 HD1 H 0 1 N N N N N N -20.136 -39.923 -16.007 0.706 -1.952 0.976 HD1 TEF 24
TEF HE1 HE1 H 0 1 N N N N N N -19.758 -41.859 -17.451 -1.723 -2.038 0.589 HE1 TEF 25
TEF H7 H7 H 0 1 N N N N N N -22.200 -46.609 -19.296 -6.208 1.158 -0.719 H7 TEF 26
TEF HE2 HE2 H 0 1 N N N N N N -23.605 -43.354 -16.436 -1.744 2.171 -0.160 HE2 TEF 27
TEF HD2 HD2 H 0 1 N N N N N N -24.009 -41.416 -14.982 0.684 2.248 0.234 HD2 TEF 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TEF N CA SING N N 1
TEF CA CB SING N N 2
TEF CA C SING N N 3
TEF CA HA SING N N 4
TEF N H SING N N 5
TEF N H2 SING N N 6
TEF C OXT SING N N 7
TEF OXT HXT SING N N 8
TEF CG CB SING N N 9
TEF CB HB2 SING N N 10
TEF CB HB3 SING N N 11
TEF N5 N2 SING Y N 12
TEF N3 N2 SING Y N 13
TEF N2 CZ SING Y N 14
TEF O C DOUB N N 15
TEF CD1 CG DOUB Y N 16
TEF CD2 CG SING Y N 17
TEF C7 N3 DOUB Y N 18
TEF CE1 CD1 SING Y N 19
TEF CD1 HD1 SING N N 20
TEF N4 C7 SING Y N 21
TEF N4 N5 DOUB Y N 22
TEF CZ CE1 DOUB Y N 23
TEF CE1 HE1 SING N N 24
TEF CZ CE2 SING Y N 25
TEF C7 H7 SING N N 26
TEF CE2 CD2 DOUB Y N 27
TEF CE2 HE2 SING N N 28
TEF CD2 HD2 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TEF SMILES ACDLabs 12.01 O=C(O)C(N)Cc1ccc(cc1)n2ncnn2
TEF SMILES_CANONICAL CACTVS 3.370 N[C@@H](Cc1ccc(cc1)n2ncnn2)C(O)=O
TEF SMILES CACTVS 3.370 N[CH](Cc1ccc(cc1)n2ncnn2)C(O)=O
TEF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 c1cc(ccc1C[C@@H](C(=O)O)N)n2ncnn2
TEF SMILES "OpenEye OEToolkits" 1.7.0 c1cc(ccc1CC(C(=O)O)N)n2ncnn2
TEF InChI InChI 1.03 InChI=1S/C10H11N5O2/c11-9(10(16)17)5-7-1-3-8(4-2-7)15-13-6-12-14-15/h1-4,6,9H,5,11H2,(H,16,17)/t9-/m0/s1
TEF InChIKey InChI 1.03 KHTQUIIGXJUWFB-VIFPVBQESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TEF "SYSTEMATIC NAME" ACDLabs 12.01 4-(2H-tetrazol-2-yl)-L-phenylalanine
TEF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S)-2-azanyl-3-[4-(1,2,3,4-tetrazol-2-yl)phenyl]propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TEF 'Create component' 2010-06-03 PDBJ
TEF 'Modify aromatic_flag' 2011-06-04 RCSB
TEF 'Modify descriptor' 2011-06-04 RCSB
TEF 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id TEF
_pdbx_chem_comp_synonyms.name p-(2-tetrazolyl)-phenylalanine
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id TEF
_pdbe_chem_comp_synonyms.name p-(2-tetrazolyl)-phenylalanine
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
TEF CA C 5.104 -2.939 1
TEF N N 3.805 -2.189 2
TEF OXT O 3.805 -5.189 3
TEF CB C 6.404 -2.189 4
TEF N2 N 6.404 3.811 5
TEF O O 6.404 -5.189 6
TEF CG C 6.404 -0.689 7
TEF N3 N 5.190 4.693 8
TEF CD1 C 7.702 0.061 9
TEF N4 N 7.154 6.119 10
TEF CE1 C 7.702 1.561 11
TEF N5 N 7.617 4.693 12
TEF CZ C 6.404 2.311 13
TEF C7 C 5.654 6.119 14
TEF CE2 C 5.104 1.561 15
TEF CD2 C 5.104 0.061 16
TEF C C 5.104 -4.439 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
TEF CA N SINGLE BEGINWEDGE 1
TEF CA CB SINGLE NONE 2
TEF CA C SINGLE NONE 3
TEF C OXT SINGLE NONE 4
TEF CG CB SINGLE NONE 5
TEF N5 N2 SINGLE NONE 6
TEF N3 N2 SINGLE NONE 7
TEF N2 CZ SINGLE NONE 8
TEF O C DOUBLE NONE 9
TEF CD1 CG DOUBLE NONE 10
TEF CD2 CG SINGLE NONE 11
TEF C7 N3 DOUBLE NONE 12
TEF CE1 CD1 SINGLE NONE 13
TEF N4 C7 SINGLE NONE 14
TEF N4 N5 DOUBLE NONE 15
TEF CZ CE1 DOUBLE NONE 16
TEF CZ CE2 SINGLE NONE 17
TEF CE2 CD2 DOUBLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
TEF MurckoScaffold S1 scaffold c1ccc(-n2ncnn2)cc1 InChI=1S/C7H6N4/c1-2-4-7(5-3-1)11-9-6-8-10-11/h1-6H QLDFMNWSPWEFIM-UHFFFAOYSA-N
TEF peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
TEF phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
TEF N2 S1 1
TEF CG S1 1
TEF N3 S1 1
TEF CD1 S1 1
TEF N4 S1 1
TEF CE1 S1 1
TEF N5 S1 1
TEF CZ S1 1
TEF C7 S1 1
TEF CE2 S1 1
TEF CD2 S1 1
TEF O F1 1
TEF C F1 1
TEF CA F1 1
TEF N F1 1
TEF CG F2 1
TEF CD1 F2 1
TEF CE1 F2 1
TEF CZ F2 1
TEF CE2 F2 1
TEF CD2 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id TEF
_pdbe_chem_comp_rdkit_properties.exactmw 233.091
_pdbe_chem_comp_rdkit_properties.amw 233.231
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 28
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.200
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 112.520
_pdbe_chem_comp_rdkit_properties.tpsa 106.920
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.628
_pdbe_chem_comp_rdkit_properties.CrippenMR 57.542
_pdbe_chem_comp_rdkit_properties.chi0v 8.053
_pdbe_chem_comp_rdkit_properties.chi1v 4.153
_pdbe_chem_comp_rdkit_properties.chi2v 1.562
_pdbe_chem_comp_rdkit_properties.chi3v 1.562
_pdbe_chem_comp_rdkit_properties.chi4v 0.877
_pdbe_chem_comp_rdkit_properties.chi0n 19.053
_pdbe_chem_comp_rdkit_properties.chi1n 9.455
_pdbe_chem_comp_rdkit_properties.chi2n 1.562
_pdbe_chem_comp_rdkit_properties.chi3n 1.562
_pdbe_chem_comp_rdkit_properties.chi4n 0.877
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.280
_pdbe_chem_comp_rdkit_properties.kappa1 3.881
_pdbe_chem_comp_rdkit_properties.kappa2 4.706
_pdbe_chem_comp_rdkit_properties.kappa3 2.640
_pdbe_chem_comp_rdkit_properties.Phi 1.074
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
TEF UniChem ChEBI 232938
TEF UniChem ZINC ZINC000058638473
TEF UniChem PubChem 46931224
TEF UniChem Nikkaji J2.886.589I
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
TEF CA -2.882 -0.726 -0.345 ETKDGv3 1
TEF N -4.216 -0.974 -0.896 ETKDGv3 2
TEF OXT -2.360 -0.481 2.093 ETKDGv3 3
TEF CB -2.007 0.055 -1.347 ETKDGv3 4
TEF N2 3.444 0.359 0.554 ETKDGv3 5
TEF O -3.664 1.081 1.031 ETKDGv3 6
TEF CG -0.578 0.159 -0.874 ETKDGv3 7
TEF N3 4.022 1.436 1.228 ETKDGv3 8
TEF CD1 -0.143 1.254 -0.228 ETKDGv3 9
TEF N4 5.480 -0.265 0.949 ETKDGv3 10
TEF CE1 1.249 1.328 0.263 ETKDGv3 11
TEF N5 4.394 -0.652 0.416 ETKDGv3 12
TEF CZ 2.091 0.296 0.078 ETKDGv3 13
TEF C7 5.235 1.050 1.457 ETKDGv3 14
TEF CE2 1.606 -0.918 -0.624 ETKDGv3 15
TEF CD2 0.347 -0.983 -1.072 ETKDGv3 16
TEF C -3.005 0.009 0.962 ETKDGv3 17
TEF HA -2.404 -1.711 -0.146 ETKDGv3 18
TEF H -4.122 -1.603 -1.727 ETKDGv3 19
TEF H2 -4.629 -0.074 -1.234 ETKDGv3 20
TEF HXT -2.418 0.008 2.978 ETKDGv3 21
TEF HB2 -2.435 1.067 -1.523 ETKDGv3 22
TEF HB3 -2.016 -0.470 -2.327 ETKDGv3 23
TEF HD1 -0.805 2.093 -0.053 ETKDGv3 24
TEF HE1 1.574 2.225 0.774 ETKDGv3 25
TEF H7 5.970 1.654 1.971 ETKDGv3 26
TEF HE2 2.269 -1.760 -0.777 ETKDGv3 27
TEF HD2 0.003 -1.876 -1.579 ETKDGv3 28
#