data_TB8
#
_chem_comp.id TB8
_chem_comp.name (~{E})-3-(2-chlorophenyl)-~{N}-oxidanyl-prop-2-enamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H8 Cl N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-06-27
_chem_comp.pdbx_modified_date 2018-08-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 197.618
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TB8
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6GXA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TB8 CL1 CL1 CL 0 0 N N N N N N 46.553 36.723 83.974 -1.988 -2.162 -0.001 CL1 TB8 1
TB8 C10 C1 C 0 1 Y N N N N N 44.905 36.088 83.637 -2.158 -0.434 -0.001 C10 TB8 2
TB8 C09 C2 C 0 1 Y N N N N N 44.004 36.840 82.889 -3.414 0.139 0.004 C09 TB8 3
TB8 C08 C3 C 0 1 Y N N N N N 42.731 36.343 82.630 -3.550 1.515 0.004 C08 TB8 4
TB8 C07 C4 C 0 1 Y N N N N N 42.354 35.099 83.119 -2.431 2.329 -0.001 C07 TB8 5
TB8 C06 C5 C 0 1 Y N N N N N 43.253 34.351 83.867 -1.169 1.774 -0.006 C06 TB8 6
TB8 C05 C6 C 0 1 Y N N N N N 44.528 34.845 84.125 -1.021 0.383 -0.001 C05 TB8 7
TB8 C04 C7 C 0 1 N N N N N N 45.488 34.041 84.919 0.322 -0.218 -0.000 C04 TB8 8
TB8 C03 C8 C 0 1 N N N N N N 45.776 32.802 84.521 1.414 0.572 -0.000 C03 TB8 9
TB8 C02 C9 C 0 1 N N N N N N 46.728 31.950 85.264 2.750 -0.026 0.001 C02 TB8 10
TB8 O01 O1 O 0 1 N N N N N N 47.351 32.402 86.213 2.875 -1.237 0.001 O01 TB8 11
TB8 N12 N1 N 0 1 N N N N N N 46.883 30.689 84.879 3.842 0.764 0.001 N12 TB8 12
TB8 O13 O2 O 0 1 N N N N N N 48.156 30.133 84.812 5.135 0.186 0.001 O13 TB8 13
TB8 H1 H1 H 0 1 N N N N N N 44.293 37.809 82.510 -4.293 -0.490 0.007 H1 TB8 14
TB8 H2 H2 H 0 1 N N N N N N 42.034 36.926 82.047 -4.536 1.957 0.009 H2 TB8 15
TB8 H3 H3 H 0 1 N N N N N N 41.365 34.715 82.918 -2.546 3.403 -0.001 H3 TB8 16
TB8 H4 H4 H 0 1 N N N N N N 42.962 33.384 84.249 -0.297 2.411 -0.010 H4 TB8 17
TB8 H5 H5 H 0 1 N N N N N N 45.947 34.453 85.806 0.433 -1.293 -0.000 H5 TB8 18
TB8 H6 H6 H 0 1 N N N N N N 45.302 32.411 83.633 1.304 1.646 -0.000 H6 TB8 19
TB8 H7 H7 H 0 1 N N N N N N 46.084 30.139 84.637 3.743 1.729 0.001 H7 TB8 20
TB8 H8 H8 H 0 1 N N N N N N 48.757 30.652 85.334 5.855 0.831 0.002 H8 TB8 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TB8 C08 C09 DOUB Y N 1
TB8 C08 C07 SING Y N 2
TB8 C09 C10 SING Y N 3
TB8 C07 C06 DOUB Y N 4
TB8 C10 CL1 SING N N 5
TB8 C10 C05 DOUB Y N 6
TB8 C06 C05 SING Y N 7
TB8 C05 C04 SING N N 8
TB8 C03 C04 DOUB N E 9
TB8 C03 C02 SING N N 10
TB8 O13 N12 SING N N 11
TB8 N12 C02 SING N N 12
TB8 C02 O01 DOUB N N 13
TB8 C09 H1 SING N N 14
TB8 C08 H2 SING N N 15
TB8 C07 H3 SING N N 16
TB8 C06 H4 SING N N 17
TB8 C04 H5 SING N N 18
TB8 C03 H6 SING N N 19
TB8 N12 H7 SING N N 20
TB8 O13 H8 SING N N 21
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TB8 InChI InChI 1.03 InChI=1S/C9H8ClNO2/c10-8-4-2-1-3-7(8)5-6-9(12)11-13/h1-6,13H,(H,11,12)/b6-5+
TB8 InChIKey InChI 1.03 HMGPSDPNANTYKH-AATRIKPKSA-N
TB8 SMILES_CANONICAL CACTVS 3.385 ONC(=O)\C=C\c1ccccc1Cl
TB8 SMILES CACTVS 3.385 ONC(=O)C=Cc1ccccc1Cl
TB8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1ccc(c(c1)/C=C/C(=O)NO)Cl
TB8 SMILES "OpenEye OEToolkits" 2.0.6 c1ccc(c(c1)C=CC(=O)NO)Cl
#
_pdbx_chem_comp_identifier.comp_id TB8
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier (~{E})-3-(2-chlorophenyl)-~{N}-oxidanyl-prop-2-enamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TB8 'Create component' 2018-06-27 RCSB
TB8 'Initial release' 2018-08-15 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
TB8 CL1 Cl 3.000 -1.732 1
TB8 C10 C 4.299 -2.482 2
TB8 C09 C 4.299 -3.982 3
TB8 C08 C 5.598 -4.732 4
TB8 C07 C 6.897 -3.982 5
TB8 C06 C 6.897 -2.482 6
TB8 C05 C 5.598 -1.732 7
TB8 C04 C 5.598 -0.233 8
TB8 C03 C 6.897 0.517 9
TB8 C02 C 6.897 2.018 10
TB8 O01 O 5.598 2.768 11
TB8 N12 N 8.196 2.768 12
TB8 O13 O 8.196 4.268 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
TB8 C08 C09 SINGLE NONE 1
TB8 C08 C07 DOUBLE NONE 2
TB8 C09 C10 DOUBLE NONE 3
TB8 C07 C06 SINGLE NONE 4
TB8 C10 CL1 SINGLE NONE 5
TB8 C10 C05 SINGLE NONE 6
TB8 C06 C05 DOUBLE NONE 7
TB8 C05 C04 SINGLE ENDDOWNRIGHT 8
TB8 C03 C04 DOUBLE NONE 9
TB8 C03 C02 SINGLE ENDDOWNRIGHT 10
TB8 O13 N12 SINGLE NONE 11
TB8 N12 C02 SINGLE NONE 12
TB8 C02 O01 DOUBLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
TB8 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
TB8 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
TB8 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
TB8 C10 S1 1
TB8 C09 S1 1
TB8 C08 S1 1
TB8 C07 S1 1
TB8 C06 S1 1
TB8 C05 S1 1
TB8 N12 F1 1
TB8 C02 F1 1
TB8 O01 F1 1
TB8 C03 F1 1
TB8 C10 F2 1
TB8 C09 F2 1
TB8 C08 F2 1
TB8 C07 F2 1
TB8 C06 F2 1
TB8 C05 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id TB8
_pdbe_chem_comp_rdkit_properties.exactmw 197.024
_pdbe_chem_comp_rdkit_properties.amw 197.621
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 91.984
_pdbe_chem_comp_rdkit_properties.tpsa 49.330
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.804
_pdbe_chem_comp_rdkit_properties.CrippenMR 50.149
_pdbe_chem_comp_rdkit_properties.chi0v 6.898
_pdbe_chem_comp_rdkit_properties.chi1v 3.427
_pdbe_chem_comp_rdkit_properties.chi2v 1.303
_pdbe_chem_comp_rdkit_properties.chi3v 1.303
_pdbe_chem_comp_rdkit_properties.chi4v 0.664
_pdbe_chem_comp_rdkit_properties.chi0n 14.142
_pdbe_chem_comp_rdkit_properties.chi1n 6.905
_pdbe_chem_comp_rdkit_properties.chi2n 1.019
_pdbe_chem_comp_rdkit_properties.chi3n 1.019
_pdbe_chem_comp_rdkit_properties.chi4n 0.522
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.320
_pdbe_chem_comp_rdkit_properties.kappa1 3.440
_pdbe_chem_comp_rdkit_properties.kappa2 4.644
_pdbe_chem_comp_rdkit_properties.kappa3 2.892
_pdbe_chem_comp_rdkit_properties.Phi 1.229
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
TB8 UniChem SureChEMBL SCHEMBL12425739
TB8 UniChem 'PubChem TPHARMA' 125296360
TB8 UniChem BRENDA 266816
TB8 UniChem BindingDb 50383528
TB8 UniChem PubChem 53374623
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
TB8 CL1 -0.495 -1.964 1.738 ETKDGv3 1
TB8 C10 -1.502 -0.896 0.765 ETKDGv3 2
TB8 C09 -2.797 -1.210 0.610 ETKDGv3 3
TB8 C08 -3.709 -0.293 -0.099 ETKDGv3 4
TB8 C07 -3.254 0.872 -0.570 ETKDGv3 5
TB8 C06 -1.831 1.231 -0.406 ETKDGv3 6
TB8 C05 -0.977 0.386 0.198 ETKDGv3 7
TB8 C04 0.445 0.776 0.307 ETKDGv3 8
TB8 C03 1.442 -0.071 0.025 ETKDGv3 9
TB8 C02 2.860 0.327 0.094 ETKDGv3 10
TB8 O01 3.183 1.493 0.450 ETKDGv3 11
TB8 N12 3.880 -0.618 -0.242 ETKDGv3 12
TB8 O13 5.188 -0.274 -0.173 ETKDGv3 13
TB8 H1 -3.192 -2.126 1.031 ETKDGv3 14
TB8 H2 -4.752 -0.558 -0.220 ETKDGv3 15
TB8 H3 -3.925 1.551 -1.079 ETKDGv3 16
TB8 H4 -1.483 2.174 -0.811 ETKDGv3 17
TB8 H5 0.670 1.812 0.533 ETKDGv3 18
TB8 H6 1.213 -1.081 -0.292 ETKDGv3 19
TB8 H7 3.624 -1.591 -0.523 ETKDGv3 20
TB8 H8 5.412 0.058 -1.080 ETKDGv3 21
#