data_STI
#
_chem_comp.id STI
_chem_comp.name 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H31 N7 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "STI-571; IMATINIB"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2001-04-11
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 493.603
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code STI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1IEP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
STI C1 C1 C 0 1 Y N N N N N 16.356 100.406 50.614 2.740 -0.022 8.889 C1 STI 1
STI C6 C6 C 0 1 Y N N N N N 15.218 100.012 51.414 1.914 0.207 7.802 C6 STI 2
STI C5 C5 C 0 1 Y N N N N N 15.089 100.453 52.798 2.435 0.009 6.520 C5 STI 3
STI C4 C4 C 0 1 Y N N N N N 16.138 101.298 53.339 3.755 -0.413 6.387 C4 STI 4
STI N3 N3 N 0 1 Y N N N N N 17.220 101.660 52.543 4.505 -0.614 7.452 N3 STI 5
STI C2 C2 C 0 1 Y N N N N N 17.356 101.243 51.215 4.042 -0.436 8.674 C2 STI 6
STI C7 C7 C 0 1 Y N N N N N 13.928 100.078 53.673 1.593 0.241 5.321 C7 STI 7
STI C12 C12 C 0 1 Y N N N N N 12.723 99.470 53.173 2.131 0.848 4.183 C12 STI 8
STI C11 C11 C 0 1 Y N N N N N 11.704 99.172 54.114 1.308 1.042 3.088 C11 STI 9
STI N10 N10 N 0 1 Y N N N N N 11.881 99.464 55.456 0.045 0.651 3.150 N10 STI 10
STI C9 C9 C 0 1 Y N N N N N 13.053 100.050 55.907 -0.438 0.077 4.242 C9 STI 11
STI N8 N8 N 0 1 Y N N N N N 14.046 100.345 55.023 0.313 -0.122 5.314 N8 STI 12
STI N13 N13 N 0 1 N N N N N N 13.263 100.362 57.253 -1.765 -0.317 4.266 N13 STI 13
STI C14 C14 C 0 1 Y N N N N N 12.302 100.109 58.246 -2.541 -0.230 3.106 C14 STI 14
STI C19 C19 C 0 1 Y N N N N N 11.195 101.040 58.488 -3.901 0.040 3.198 C19 STI 15
STI C18 C18 C 0 1 Y N N N N N 10.251 100.722 59.524 -4.669 0.126 2.052 C18 STI 16
STI C17 C17 C 0 1 Y N N N N N 10.386 99.520 60.309 -4.087 -0.056 0.812 C17 STI 17
STI C16 C16 C 0 1 Y N N N N N 11.456 98.610 60.086 -2.728 -0.327 0.714 C16 STI 18
STI C15 C15 C 0 1 Y N N N N N 12.424 98.921 59.032 -1.955 -0.419 1.862 C15 STI 19
STI N21 N21 N 0 1 N N N N N N 11.516 97.436 60.923 -2.140 -0.512 -0.541 N21 STI 20
STI C22 C22 C 0 1 N N N N N N 12.446 96.415 60.910 -2.547 0.228 -1.591 C22 STI 21
STI C23 C23 C 0 1 Y N N N N N 12.472 95.442 62.042 -1.994 -0.031 -2.937 C23 STI 22
STI C25 C25 C 0 1 Y N N N N N 13.689 94.696 62.364 -2.413 0.734 -4.027 C25 STI 23
STI C26 C26 C 0 1 Y N N N N N 13.682 93.749 63.449 -1.892 0.486 -5.280 C26 STI 24
STI C27 C27 C 0 1 Y N N N N N 12.463 93.546 64.214 -0.957 -0.517 -5.458 C27 STI 25
STI C28 C28 C 0 1 Y N N N N N 11.274 94.301 63.879 -0.542 -1.283 -4.384 C28 STI 26
STI C29 C29 C 0 1 Y N N N N N 11.272 95.230 62.817 -1.050 -1.042 -3.124 C29 STI 27
STI C46 C46 C 0 1 N N N N N N 12.371 92.542 65.368 -0.393 -0.781 -6.830 C46 STI 28
STI N48 N48 N 0 1 N N N N N N 11.230 91.579 65.364 0.809 0.038 -7.032 N48 STI 29
STI C53 C53 C 0 1 N N N N N N 11.214 90.778 64.093 1.306 -0.264 -8.379 C53 STI 30
STI C52 C52 C 0 1 N N N N N N 10.031 89.776 64.067 2.629 0.463 -8.615 C52 STI 31
STI N51 N51 N 0 1 N N N N N N 10.081 88.858 65.278 3.638 -0.027 -7.668 N51 STI 32
STI C54 C54 C 0 1 N N N N N N 8.985 87.875 65.306 4.840 0.792 -7.870 C54 STI 33
STI C50 C50 C 0 1 N N N N N N 10.070 89.659 66.572 3.141 0.276 -6.321 C50 STI 34
STI C49 C49 C 0 1 N N N N N N 11.273 90.652 66.574 1.817 -0.452 -6.085 C49 STI 35
STI O29 O29 O 0 1 N N N N N N 13.258 96.231 60.024 -3.368 1.110 -1.431 O29 STI 36
STI C20 C20 C 0 1 N N N N N N 10.986 102.351 57.694 -4.539 0.240 4.548 C20 STI 37
STI H11 1H1 H 0 1 N N N N N N 16.459 100.074 49.566 2.371 0.120 9.894 H11 STI 38
STI H61 1H6 H 0 1 N N N N N N 14.441 99.369 50.964 0.893 0.532 7.941 H61 STI 39
STI H41 1H4 H 0 1 N N N N N N 16.112 101.672 54.376 4.171 -0.570 5.403 H41 STI 40
STI H21 1H2 H 0 1 N N N N N N 18.243 101.570 50.647 4.689 -0.616 9.519 H21 STI 41
STI H121 1H12 H 0 0 N N N N N N 12.584 99.239 52.103 3.166 1.157 4.159 H121 STI 42
STI H111 1H11 H 0 0 N N N N N N 10.756 98.704 53.796 1.692 1.508 2.193 H111 STI 43
STI H131 1H13 H 0 0 N N N N N N 13.506 101.351 57.305 -2.157 -0.654 5.087 H131 STI 44
STI H181 1H18 H 0 0 N N N N N N 9.411 101.410 59.719 -5.725 0.336 2.126 H181 STI 45
STI H171 1H17 H 0 0 N N N N N N 9.652 99.290 61.100 -4.690 0.011 -0.080 H171 STI 46
STI H151 1H15 H 0 0 N N N N N N 13.268 98.241 58.824 -0.899 -0.630 1.788 H151 STI 47
STI H211 1H21 H 0 0 N N N N N N 10.792 97.308 61.630 -1.440 -1.173 -0.656 H211 STI 48
STI H251 1H25 H 0 0 N N N N N N 14.616 94.848 61.786 -3.142 1.518 -3.889 H251 STI 49
STI H261 1H26 H 0 0 N N N N N N 14.599 93.186 63.691 -2.216 1.077 -6.124 H261 STI 50
STI H281 1H28 H 0 0 N N N N N N 10.340 94.164 64.450 0.187 -2.065 -4.530 H281 STI 51
STI H291 1H29 H 0 0 N N N N N N 10.344 95.783 62.595 -0.722 -1.638 -2.285 H291 STI 52
STI H461 1H46 H 0 0 N N N N N N 13.328 91.975 65.438 -1.137 -0.526 -7.585 H461 STI 53
STI H462 2H46 H 0 0 N N N N N N 12.381 93.094 66.336 -0.132 -1.836 -6.919 H462 STI 54
STI H531 1H53 H 0 0 N N N N N N 11.208 91.438 63.194 0.574 0.063 -9.118 H531 STI 55
STI H532 2H53 H 0 0 N N N N N N 12.188 90.263 63.923 1.460 -1.339 -8.475 H532 STI 56
STI H521 1H52 H 0 0 N N N N N N 9.048 90.297 63.982 2.486 1.533 -8.470 H521 STI 57
STI H522 2H52 H 0 0 N N N N N N 9.996 89.200 63.112 2.968 0.278 -9.635 H522 STI 58
STI H541 1H54 H 0 0 N N N N N N 9.021 87.201 66.194 5.623 0.464 -7.185 H541 STI 59
STI H542 2H54 H 0 0 N N N N N N 7.994 88.382 65.233 5.187 0.682 -8.897 H542 STI 60
STI H543 3H54 H 0 0 N N N N N N 8.957 87.284 64.360 4.603 1.838 -7.676 H543 STI 61
STI H501 1H50 H 0 0 N N N N N N 9.096 90.174 66.741 3.872 -0.052 -5.582 H501 STI 62
STI H502 2H50 H 0 0 N N N N N N 10.061 89.004 67.474 2.986 1.350 -6.225 H502 STI 63
STI H491 1H49 H 0 0 N N N N N N 12.247 90.113 66.642 1.478 -0.267 -5.065 H491 STI 64
STI H492 2H49 H 0 0 N N N N N N 11.327 91.226 67.527 1.961 -1.522 -6.230 H492 STI 65
STI H201 1H20 H 0 0 N N N N N N 10.144 103.058 57.878 -4.890 -0.718 4.930 H201 STI 66
STI H202 2H20 H 0 0 N N N N N N 11.931 102.936 57.771 -3.807 0.661 5.237 H202 STI 67
STI H203 3H20 H 0 0 N N N N N N 10.957 102.079 56.612 -5.383 0.924 4.453 H203 STI 68
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
STI C1 C6 DOUB Y N 1
STI C1 C2 SING Y N 2
STI C1 H11 SING N N 3
STI C6 C5 SING Y N 4
STI C6 H61 SING N N 5
STI C5 C4 DOUB Y N 6
STI C5 C7 SING Y N 7
STI C4 N3 SING Y N 8
STI C4 H41 SING N N 9
STI N3 C2 DOUB Y N 10
STI C2 H21 SING N N 11
STI C7 C12 DOUB Y N 12
STI C7 N8 SING Y N 13
STI C12 C11 SING Y N 14
STI C12 H121 SING N N 15
STI C11 N10 DOUB Y N 16
STI C11 H111 SING N N 17
STI N10 C9 SING Y N 18
STI C9 N8 DOUB Y N 19
STI C9 N13 SING N N 20
STI N13 C14 SING N N 21
STI N13 H131 SING N N 22
STI C14 C19 DOUB Y N 23
STI C14 C15 SING Y N 24
STI C19 C18 SING Y N 25
STI C19 C20 SING N N 26
STI C18 C17 DOUB Y N 27
STI C18 H181 SING N N 28
STI C17 C16 SING Y N 29
STI C17 H171 SING N N 30
STI C16 C15 DOUB Y N 31
STI C16 N21 SING N N 32
STI C15 H151 SING N N 33
STI N21 C22 SING N N 34
STI N21 H211 SING N N 35
STI C22 C23 SING N N 36
STI C22 O29 DOUB N N 37
STI C23 C25 DOUB Y N 38
STI C23 C29 SING Y N 39
STI C25 C26 SING Y N 40
STI C25 H251 SING N N 41
STI C26 C27 DOUB Y N 42
STI C26 H261 SING N N 43
STI C27 C28 SING Y N 44
STI C27 C46 SING N N 45
STI C28 C29 DOUB Y N 46
STI C28 H281 SING N N 47
STI C29 H291 SING N N 48
STI C46 N48 SING N N 49
STI C46 H461 SING N N 50
STI C46 H462 SING N N 51
STI N48 C53 SING N N 52
STI N48 C49 SING N N 53
STI C53 C52 SING N N 54
STI C53 H531 SING N N 55
STI C53 H532 SING N N 56
STI C52 N51 SING N N 57
STI C52 H521 SING N N 58
STI C52 H522 SING N N 59
STI N51 C54 SING N N 60
STI N51 C50 SING N N 61
STI C54 H541 SING N N 62
STI C54 H542 SING N N 63
STI C54 H543 SING N N 64
STI C50 C49 SING N N 65
STI C50 H501 SING N N 66
STI C50 H502 SING N N 67
STI C49 H491 SING N N 68
STI C49 H492 SING N N 69
STI C20 H201 SING N N 70
STI C20 H202 SING N N 71
STI C20 H203 SING N N 72
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
STI SMILES ACDLabs 10.04 O=C(Nc3ccc(c(Nc2nc(c1cccnc1)ccn2)c3)C)c4ccc(cc4)CN5CCN(CC5)C
STI SMILES_CANONICAL CACTVS 3.341 CN1CCN(CC1)Cc2ccc(cc2)C(=O)Nc3ccc(C)c(Nc4nccc(n4)c5cccnc5)c3
STI SMILES CACTVS 3.341 CN1CCN(CC1)Cc2ccc(cc2)C(=O)Nc3ccc(C)c(Nc4nccc(n4)c5cccnc5)c3
STI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 Cc1ccc(cc1Nc2nccc(n2)c3cccnc3)NC(=O)c4ccc(cc4)CN5CCN(CC5)C
STI SMILES "OpenEye OEToolkits" 1.5.0 Cc1ccc(cc1Nc2nccc(n2)c3cccnc3)NC(=O)c4ccc(cc4)CN5CCN(CC5)C
STI InChI InChI 1.03 InChI=1S/C29H31N7O/c1-21-5-10-25(18-27(21)34-29-31-13-11-26(33-29)24-4-3-12-30-19-24)32-28(37)23-8-6-22(7-9-23)20-36-16-14-35(2)15-17-36/h3-13,18-19H,14-17,20H2,1-2H3,(H,32,37)(H,31,33,34)
STI InChIKey InChI 1.03 KTUFNOKKBVMGRW-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
STI "SYSTEMATIC NAME" ACDLabs 10.04 4-[(4-methylpiperazin-1-yl)methyl]-N-{4-methyl-3-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl}benzamide
STI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 4-[(4-methylpiperazin-1-yl)methyl]-N-[4-methyl-3-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl]benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
STI 'Create component' 2001-04-11 RCSB
STI 'Modify aromatic_flag' 2011-06-04 RCSB
STI 'Modify descriptor' 2011-06-04 RCSB
STI 'Modify synonyms' 2020-06-05 PDBE
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 STI STI-571 ? ?
2 STI IMATINIB ? ?
#
_pdbe_chem_comp_drugbank_details.comp_id STI
_pdbe_chem_comp_drugbank_details.drugbank_id DB00619
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Imatinib
_pdbe_chem_comp_drugbank_details.description
'Imatinib is a small molecule kinase inhibitor that revolutionized the treatment of cancer, particularly chronic myeloid leukemia, in 2001.[A249305] It was deemed a "miracle drug" due to its clinical success, as oncologist Dr. Brian noted that "complete hematologic responses were observed in 53 of 54 patients with CML treated with a daily dosage of 300 mg or more and typically occurred in the first four weeks of therapy".[A249315]. The discovery of imatinib also established a new group of therapy called "targeted therapy", since treatment can be tailored specifically to the unique cancer genetics of each patient.[L42220]   Imatinib was approved on February 1st ,2001 by the FDA and November 7th, 2001 by the EMA; however, its European approval has been withdrawn in October 2023.[A263036,L49746,L49751]'
_pdbe_chem_comp_drugbank_details.cas_number 152459-95-5
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Imatinib mesylate is a protein-tyrosine kinase inhibitor that inhibits the BCR-ABL tyrosine kinase, the constitutively active tyrosine kinase created by the Philadelphia chromosome abnormality in CML.[L42080]Although the function of normal BCR is still unclear, ABL activation is overexpressed in various tumors and is heavily implicated in cancer cells growth and survival.[A249305,A249310] Imatinib inhibits the BCR-ABL protein by binding to the ATP pocket in the active site, thus preventing downstream phosphorylation of target protein.[A249305]  Imatinib is also an inhibitor of the receptor tyrosine kinases for platelet-derived growth factor (PDGF) and stem cell factor (SCF), c-Kit, and inhibits PDGF- and SCF-mediated cellular events. In vitro, imatinib inhibits proliferation and induces apoptosis in GIST cells, which express an activating c-Kit mutation.[L42080]'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
STI STI-571 wwPDB ?
STI IMATINIB wwPDB ?
STI Imatinib DrugBank ?
STI Imatinibum DrugBank ?
STI "α-(4-methyl-1-piperazinyl)-3'-((4-(3-pyridyl)-2-pyrimidinyl)amino)-p-toluidide" DrugBank ?
STI Celonib DrugBank 'International brand'
STI Enliven DrugBank 'International brand'
STI Imatib DrugBank 'International brand'
STI Mesylonib DrugBank 'International brand'
STI Mitinab DrugBank 'International brand'
STI Plivatinib DrugBank 'International brand'
STI Shantinib DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id STI
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00619
_pdbe_chem_comp_drugbank_classification.parent Benzanilides
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as benzanilides. These are aromatic compounds containing an anilide group in which the carboxamide group is substituted with a benzene ring. They have the general structure RNC(=O)R', where R,R'= benzene."
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
STI DB00619 'Breakpoint cluster region protein' Humans P11274 yes 1
STI DB00619 'Mast/stem cell growth factor receptor Kit' Humans P10721 yes 2
STI DB00619 'Proto-oncogene tyrosine-protein kinase receptor Ret' Humans P07949 yes 3
STI DB00619 'Platelet-derived growth factor receptor alpha' Humans P16234 yes 4
STI DB00619 'Tyrosine-protein kinase ABL1' Humans P00519 yes 5
STI DB00619 'Platelet-derived growth factor receptor beta' Humans P09619 yes 6
STI DB00619 'Macrophage colony-stimulating factor 1 receptor' Humans P07333 yes 7
STI DB00619 'Epithelial discoidin domain-containing receptor 1' Humans Q08345 yes 8
STI DB00619 'Discoidin domain-containing receptor 2' Humans Q16832 yes 9
STI DB00619 'Induced myeloid leukemia cell differentiation protein Mcl-1' Humans Q07820 unknown 10
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
STI C1 C 5.598 3.750 1
STI C6 C 6.897 4.500 2
STI C5 C 6.897 6.000 3
STI C4 C 5.598 6.750 4
STI N3 N 4.299 6.000 5
STI C2 C 4.299 4.500 6
STI C7 C 8.196 6.750 7
STI C12 C 8.196 8.250 8
STI C11 C 9.495 9.000 9
STI N10 N 10.794 8.250 10
STI C9 C 10.794 6.750 11
STI N8 N 9.495 6.000 12
STI N13 N 12.093 6.000 13
STI C14 C 12.093 4.500 14
STI C19 C 13.392 3.750 15
STI C18 C 13.392 2.250 16
STI C17 C 12.093 1.500 17
STI C16 C 10.794 2.250 18
STI C15 C 10.794 3.750 19
STI N21 N 9.495 1.500 20
STI C22 C 9.495 0.000 21
STI C23 C 8.196 -0.750 22
STI C25 C 8.196 -2.250 23
STI C26 C 6.897 -3.000 24
STI C27 C 5.598 -2.250 25
STI C28 C 5.598 -0.750 26
STI C29 C 6.897 0.000 27
STI C46 C 4.299 -3.000 28
STI N48 N 4.299 -4.500 29
STI C53 C 3.000 -5.250 30
STI C52 C 3.000 -6.750 31
STI N51 N 4.299 -7.500 32
STI C54 C 4.299 -9.000 33
STI C50 C 5.598 -6.750 34
STI C49 C 5.598 -5.250 35
STI O29 O 10.794 -0.750 36
STI C20 C 14.691 4.500 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
STI C1 C6 DOUBLE NONE 1
STI C1 C2 SINGLE NONE 2
STI C6 C5 SINGLE NONE 3
STI C5 C4 DOUBLE NONE 4
STI C5 C7 SINGLE NONE 5
STI C4 N3 SINGLE NONE 6
STI N3 C2 DOUBLE NONE 7
STI C7 C12 DOUBLE NONE 8
STI C7 N8 SINGLE NONE 9
STI C12 C11 SINGLE NONE 10
STI C11 N10 DOUBLE NONE 11
STI N10 C9 SINGLE NONE 12
STI C9 N8 DOUBLE NONE 13
STI C9 N13 SINGLE NONE 14
STI N13 C14 SINGLE NONE 15
STI C14 C19 DOUBLE NONE 16
STI C14 C15 SINGLE NONE 17
STI C19 C18 SINGLE NONE 18
STI C19 C20 SINGLE NONE 19
STI C18 C17 DOUBLE NONE 20
STI C17 C16 SINGLE NONE 21
STI C16 C15 DOUBLE NONE 22
STI C16 N21 SINGLE NONE 23
STI N21 C22 SINGLE NONE 24
STI C22 C23 SINGLE NONE 25
STI C22 O29 DOUBLE NONE 26
STI C23 C25 DOUBLE NONE 27
STI C23 C29 SINGLE NONE 28
STI C25 C26 SINGLE NONE 29
STI C26 C27 DOUBLE NONE 30
STI C27 C28 SINGLE NONE 31
STI C27 C46 SINGLE NONE 32
STI C28 C29 DOUBLE NONE 33
STI C46 N48 SINGLE NONE 34
STI N48 C53 SINGLE NONE 35
STI N48 C49 SINGLE NONE 36
STI C53 C52 SINGLE NONE 37
STI C52 N51 SINGLE NONE 38
STI N51 C54 SINGLE NONE 39
STI N51 C50 SINGLE NONE 40
STI C50 C49 SINGLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
STI MurckoScaffold S1 scaffold O=C(Nc1cccc(Nc2nccc(-c3cccnc3)n2)c1)c1ccc(CN2CCNCC2)cc1 InChI=1S/C27H27N7O/c35-26(21-8-6-20(7-9-21)19-34-15-13-28-14-16-34)31-23-4-1-5-24(17-23)32-27-30-12-10-25(33-27)22-3-2-11-29-18-22/h1-12,17-18,28H,13-16,19H2,(H,31,35)(H,30,32,33) OQFKLAGYMRDHNC-UHFFFAOYSA-N
STI amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
STI phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
STI piperazine F3 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
STI pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
STI pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
STI Z54628578 F6 fragment CNc1ncccn1 InChI=1S/C5H7N3/c1-6-5-7-3-2-4-8-5/h2-4H,1H3,(H,6,7,8) BQNXHDSGGRTFNX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
STI C1 S1 1
STI C6 S1 1
STI C5 S1 1
STI C4 S1 1
STI N3 S1 1
STI C2 S1 1
STI C7 S1 1
STI C12 S1 1
STI C11 S1 1
STI N10 S1 1
STI C9 S1 1
STI N8 S1 1
STI N13 S1 1
STI C14 S1 1
STI C19 S1 1
STI C18 S1 1
STI C17 S1 1
STI C16 S1 1
STI C15 S1 1
STI N21 S1 1
STI C22 S1 1
STI C23 S1 1
STI C25 S1 1
STI C26 S1 1
STI C27 S1 1
STI C28 S1 1
STI C29 S1 1
STI C46 S1 1
STI N48 S1 1
STI C53 S1 1
STI C52 S1 1
STI N51 S1 1
STI C50 S1 1
STI C49 S1 1
STI O29 S1 1
STI N21 F1 1
STI C22 F1 1
STI O29 F1 1
STI C23 F1 1
STI C14 F2 1
STI C19 F2 1
STI C18 F2 1
STI C17 F2 1
STI C16 F2 1
STI C15 F2 1
STI C23 F2 2
STI C25 F2 2
STI C26 F2 2
STI C27 F2 2
STI C28 F2 2
STI C29 F2 2
STI N48 F3 1
STI C53 F3 1
STI C52 F3 1
STI N51 F3 1
STI C50 F3 1
STI C49 F3 1
STI C4 F4 1
STI C5 F4 1
STI C6 F4 1
STI C1 F4 1
STI C2 F4 1
STI N3 F4 1
STI C12 F5 1
STI C7 F5 1
STI N8 F5 1
STI C9 F5 1
STI N10 F5 1
STI C11 F5 1
STI C14 F6 1
STI N13 F6 1
STI C9 F6 1
STI N10 F6 1
STI C11 F6 1
STI C12 F6 1
STI C7 F6 1
STI N8 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id STI
_pdbe_chem_comp_rdkit_properties.exactmw 493.259
_pdbe_chem_comp_rdkit_properties.amw 493.615
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 68
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.241
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 260.626
_pdbe_chem_comp_rdkit_properties.tpsa 86.280
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.904
_pdbe_chem_comp_rdkit_properties.CrippenMR 142.302
_pdbe_chem_comp_rdkit_properties.chi0v 18.039
_pdbe_chem_comp_rdkit_properties.chi1v 9.782
_pdbe_chem_comp_rdkit_properties.chi2v 4.060
_pdbe_chem_comp_rdkit_properties.chi3v 4.060
_pdbe_chem_comp_rdkit_properties.chi4v 2.478
_pdbe_chem_comp_rdkit_properties.chi0n 49.039
_pdbe_chem_comp_rdkit_properties.chi1n 25.176
_pdbe_chem_comp_rdkit_properties.chi2n 4.060
_pdbe_chem_comp_rdkit_properties.chi3n 4.060
_pdbe_chem_comp_rdkit_properties.chi4n 2.478
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.140
_pdbe_chem_comp_rdkit_properties.kappa1 7.243
_pdbe_chem_comp_rdkit_properties.kappa2 11.282
_pdbe_chem_comp_rdkit_properties.kappa3 6.355
_pdbe_chem_comp_rdkit_properties.Phi 2.209
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
STI UniChem DrugBank DB00619
STI UniChem 'Guide to Pharmacology' 5687
STI UniChem ChEBI 45783
STI UniChem ZINC ZINC000019632618
STI UniChem eMolecules 876446
STI UniChem atlas imatinib
STI UniChem fdasrs BKJ8M8G5HI
STI UniChem SureChEMBL SCHEMBL3827
STI UniChem PharmGKB PA10804
STI UniChem HMDB HMDB0014757
STI UniChem Selleck Imatinib(STI571)
STI UniChem Mcule MCULE-2384256888
STI UniChem LINCS LSM-1023
STI UniChem ACTor 152459-95-5
STI UniChem Nikkaji J1.337.143A
STI UniChem BindingDb 13530
STI UniChem 'EPA CompTox Dashboard' DTXSID3037125
STI UniChem DrugCentral 1423
STI UniChem BRENDA 163324
STI UniChem BRENDA 229529
STI UniChem BRENDA 229530
STI UniChem BRENDA 2314
STI UniChem ChemicalBook CB7370890
STI UniChem DailyMed IMATINIB
STI UniChem ClinicalTrials GLAMOX
STI UniChem ClinicalTrials GLEEVEC
STI UniChem ClinicalTrials IMATINIB
STI UniChem ClinicalTrials 'IMATINIB MESILATE'
STI UniChem ClinicalTrials 'IMATINIB MESYLATE'
STI UniChem ClinicalTrials 'IMATINIB METHANESULFONATE'
STI UniChem ClinicalTrials NSC-716051
STI UniChem ClinicalTrials QTI-571
STI UniChem ClinicalTrials QTI571
STI UniChem ClinicalTrials 'STI 571'
STI UniChem ClinicalTrials STI-571
STI UniChem ClinicalTrials STI571
STI UniChem rxnorm GLEEVEC
STI UniChem rxnorm IMATINIB
STI UniChem rxnorm 'IMATINIB MESYLATE'
STI UniChem MedChemExpress HY-15463
STI UniChem 'Probes And Drugs' PD001319
STI UniChem CCDC KIZXAW
STI UniChem PubChem 5291
STI UniChem 'PubChem TPHARMA' 14859628
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
STI C1 6.466 3.198 -1.531 ETKDGv3 1
STI C6 6.720 1.888 -1.604 ETKDGv3 2
STI C5 6.186 0.963 -0.567 ETKDGv3 3
STI C4 5.428 1.484 0.418 ETKDGv3 4
STI N3 5.174 2.899 0.473 ETKDGv3 5
STI C2 5.648 3.716 -0.420 ETKDGv3 6
STI C7 6.439 -0.501 -0.622 ETKDGv3 7
STI C12 7.512 -1.018 -1.246 ETKDGv3 8
STI C11 7.689 -2.481 -1.259 ETKDGv3 9
STI N10 6.819 -3.248 -0.672 ETKDGv3 10
STI C9 5.677 -2.690 -0.004 ETKDGv3 11
STI N8 5.516 -1.398 0.025 ETKDGv3 12
STI N13 4.752 -3.559 0.665 ETKDGv3 13
STI C14 3.514 -3.106 1.245 ETKDGv3 14
STI C19 3.094 -3.576 2.443 ETKDGv3 15
STI C18 1.800 -3.108 2.998 ETKDGv3 16
STI C17 1.059 -2.214 2.336 ETKDGv3 17
STI C16 1.514 -1.682 1.029 ETKDGv3 18
STI C15 2.664 -2.136 0.505 ETKDGv3 19
STI N21 0.714 -0.745 0.288 ETKDGv3 20
STI C22 -0.141 0.228 0.908 ETKDGv3 21
STI C23 -1.241 0.865 0.143 ETKDGv3 22
STI C25 -1.785 2.024 0.559 ETKDGv3 23
STI C26 -2.884 2.655 -0.201 ETKDGv3 24
STI C27 -3.378 2.067 -1.304 ETKDGv3 25
STI C28 -2.769 0.799 -1.776 ETKDGv3 26
STI C29 -1.770 0.229 -1.091 ETKDGv3 27
STI C46 -4.514 2.705 -2.080 ETKDGv3 28
STI N48 -5.858 2.243 -1.668 ETKDGv3 29
STI C53 -6.251 2.684 -0.311 ETKDGv3 30
STI C52 -7.483 1.911 0.171 ETKDGv3 31
STI N51 -7.192 0.463 0.295 ETKDGv3 32
STI C54 -8.437 -0.318 0.233 ETKDGv3 33
STI C50 -6.189 -0.035 -0.681 ETKDGv3 34
STI C49 -6.141 0.818 -1.960 ETKDGv3 35
STI O29 0.070 0.575 2.103 ETKDGv3 36
STI C20 3.905 -4.569 3.230 ETKDGv3 37
STI H11 6.845 3.874 -2.287 ETKDGv3 38
STI H61 7.293 1.515 -2.441 ETKDGv3 39
STI H41 5.011 0.854 1.193 ETKDGv3 40
STI H21 5.437 4.774 -0.350 ETKDGv3 41
STI H121 8.261 -0.396 -1.716 ETKDGv3 42
STI H111 8.545 -2.918 -1.755 ETKDGv3 43
STI H131 5.029 -4.561 0.776 ETKDGv3 44
STI H181 1.444 -3.494 3.944 ETKDGv3 45
STI H171 0.107 -1.909 2.751 ETKDGv3 46
STI H151 2.976 -1.793 -0.473 ETKDGv3 47
STI H211 0.844 -0.695 -0.748 ETKDGv3 48
STI H251 -1.425 2.522 1.450 ETKDGv3 49
STI H261 -3.287 3.596 0.152 ETKDGv3 50
STI H281 -3.120 0.329 -2.684 ETKDGv3 51
STI H291 -1.362 -0.708 -1.447 ETKDGv3 52
STI H461 -4.374 2.503 -3.164 ETKDGv3 53
STI H462 -4.462 3.813 -1.982 ETKDGv3 54
STI H531 -6.485 3.770 -0.332 ETKDGv3 55
STI H532 -5.439 2.515 0.425 ETKDGv3 56
STI H521 -8.317 2.099 -0.544 ETKDGv3 57
STI H522 -7.789 2.304 1.165 ETKDGv3 58
STI H541 -8.884 -0.274 -0.785 ETKDGv3 59
STI H542 -8.234 -1.378 0.496 ETKDGv3 60
STI H543 -9.173 0.070 0.971 ETKDGv3 61
STI H501 -5.189 -0.011 -0.198 ETKDGv3 62
STI H502 -6.372 -1.098 -0.957 ETKDGv3 63
STI H491 -7.130 0.754 -2.461 ETKDGv3 64
STI H492 -5.412 0.386 -2.675 ETKDGv3 65
STI H201 4.958 -4.227 3.312 ETKDGv3 66
STI H202 3.505 -4.686 4.259 ETKDGv3 67
STI H203 3.874 -5.559 2.728 ETKDGv3 68
#