data_SSK
#
_chem_comp.id SSK
_chem_comp.name (1S,2S)-1,2-diphenylethane-1,2-diamine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H16 N2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-09-03
_chem_comp.pdbx_modified_date 2017-10-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 212.290
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SSK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5XF4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SSK N1 N1 N 0 1 N N N N N N -29.486 -53.405 35.322 0.070 1.015 -1.436 N1 SSK 1
SSK C8 C1 C 0 1 N N S N N N -28.098 -53.662 34.940 0.406 -0.182 -0.654 C8 SSK 2
SSK C9 C2 C 0 1 Y N N N N N -27.504 -52.300 34.796 1.880 -0.180 -0.341 C9 SSK 3
SSK C14 C3 C 0 1 Y N N N N N -27.783 -51.282 35.715 2.601 -1.358 -0.398 C14 SSK 4
SSK C13 C4 C 0 1 Y N N N N N -27.260 -50.004 35.530 3.953 -1.357 -0.110 C13 SSK 5
SSK C12 C5 C 0 1 Y N N N N N -26.467 -49.728 34.419 4.584 -0.176 0.235 C12 SSK 6
SSK C11 C6 C 0 1 Y N N N N N -26.203 -50.732 33.492 3.864 1.002 0.291 C11 SSK 7
SSK C10 C7 C 0 1 Y N N N N N -26.731 -52.008 33.672 2.513 1.002 -0.002 C10 SSK 8
SSK C1 C8 C 0 1 N N S N N N -27.364 -54.722 35.801 -0.393 -0.179 0.651 C1 SSK 9
SSK C2 C9 C 0 1 Y N N N N N -28.315 -55.422 36.720 -1.867 -0.181 0.337 C2 SSK 10
SSK C7 C10 C 0 1 Y N N N N N -29.295 -56.237 36.150 -2.499 0.995 -0.018 C7 SSK 11
SSK C6 C11 C 0 1 Y N N N N N -30.203 -56.912 36.957 -3.851 0.993 -0.305 C6 SSK 12
SSK C5 C12 C 0 1 Y N N N N N -30.133 -56.783 38.346 -4.571 -0.185 -0.238 C5 SSK 13
SSK C4 C13 C 0 1 Y N N N N N -29.155 -55.977 38.925 -3.938 -1.362 0.117 C4 SSK 14
SSK C3 C14 C 0 1 Y N N N N N -28.247 -55.299 38.118 -2.585 -1.361 0.400 C3 SSK 15
SSK N2 N2 N 0 1 N N N N N N -26.188 -54.279 36.552 -0.058 1.022 1.427 N2 SSK 16
SSK H1 H1 H 0 1 N N N N N N -29.966 -54.274 35.441 -0.900 1.005 -1.714 H1 SSK 17
SSK H2 H2 H 0 1 N N N N N N -29.506 -52.893 36.181 0.291 1.856 -0.924 H2 SSK 18
SSK H4 H4 H 0 1 N N N N N N -28.131 -54.085 33.925 0.158 -1.073 -1.230 H4 SSK 19
SSK H5 H5 H 0 1 N N N N N N -28.407 -51.488 36.572 2.107 -2.280 -0.667 H5 SSK 20
SSK H6 H6 H 0 1 N N N N N N -27.470 -49.226 36.249 4.515 -2.277 -0.154 H6 SSK 21
SSK H7 H7 H 0 1 N N N N N N -26.058 -48.738 34.277 5.641 -0.175 0.460 H7 SSK 22
SSK H8 H8 H 0 1 N N N N N N -25.587 -50.521 32.631 4.359 1.925 0.556 H8 SSK 23
SSK H9 H9 H 0 1 N N N N N N -26.541 -52.776 32.937 1.951 1.922 0.042 H9 SSK 24
SSK H10 H10 H 0 1 N N N N N N -27.011 -55.484 35.091 -0.143 -1.068 1.231 H10 SSK 25
SSK H11 H11 H 0 1 N N N N N N -29.348 -56.343 35.077 -1.937 1.916 -0.071 H11 SSK 26
SSK H12 H12 H 0 1 N N N N N N -30.963 -57.536 36.510 -4.346 1.913 -0.582 H12 SSK 27
SSK H13 H13 H 0 1 N N N N N N -30.838 -57.309 38.972 -5.627 -0.186 -0.462 H13 SSK 28
SSK H14 H14 H 0 1 N N N N N N -29.102 -55.879 39.999 -4.500 -2.282 0.170 H14 SSK 29
SSK H15 H15 H 0 1 N N N N N N -27.488 -54.676 38.567 -2.090 -2.281 0.673 H15 SSK 30
SSK H16 H16 H 0 1 N N N N N N -25.808 -55.050 37.063 -0.281 1.860 0.910 H16 SSK 31
SSK H17 H17 H 0 1 N N N N N N -25.500 -53.929 35.917 -0.524 1.016 2.322 H17 SSK 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SSK C11 C10 DOUB Y N 1
SSK C11 C12 SING Y N 2
SSK C10 C9 SING Y N 3
SSK C12 C13 DOUB Y N 4
SSK C9 C8 SING N N 5
SSK C9 C14 DOUB Y N 6
SSK C8 N1 SING N N 7
SSK C8 C1 SING N N 8
SSK C13 C14 SING Y N 9
SSK C1 N2 SING N N 10
SSK C1 C2 SING N N 11
SSK C7 C2 DOUB Y N 12
SSK C7 C6 SING Y N 13
SSK C2 C3 SING Y N 14
SSK C6 C5 DOUB Y N 15
SSK C3 C4 DOUB Y N 16
SSK C5 C4 SING Y N 17
SSK N1 H1 SING N N 18
SSK N1 H2 SING N N 19
SSK C8 H4 SING N N 20
SSK C14 H5 SING N N 21
SSK C13 H6 SING N N 22
SSK C12 H7 SING N N 23
SSK C11 H8 SING N N 24
SSK C10 H9 SING N N 25
SSK C1 H10 SING N N 26
SSK C7 H11 SING N N 27
SSK C6 H12 SING N N 28
SSK C5 H13 SING N N 29
SSK C4 H14 SING N N 30
SSK C3 H15 SING N N 31
SSK N2 H16 SING N N 32
SSK N2 H17 SING N N 33
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SSK SMILES ACDLabs 12.01 NC(C(N)c1ccccc1)c2ccccc2
SSK InChI InChI 1.03 InChI=1S/C14H16N2/c15-13(11-7-3-1-4-8-11)14(16)12-9-5-2-6-10-12/h1-10,13-14H,15-16H2/t13-,14-/m0/s1
SSK InChIKey InChI 1.03 PONXTPCRRASWKW-KBPBESRZSA-N
SSK SMILES_CANONICAL CACTVS 3.385 N[C@H]([C@@H](N)c1ccccc1)c2ccccc2
SSK SMILES CACTVS 3.385 N[CH]([CH](N)c1ccccc1)c2ccccc2
SSK SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)[C@@H]([C@H](c2ccccc2)N)N
SSK SMILES "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)C(C(c2ccccc2)N)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SSK "SYSTEMATIC NAME" ACDLabs 12.01 (1S,2S)-1,2-diphenylethane-1,2-diamine
SSK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 (1S,2S)-1,2-diphenylethane-1,2-diamine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SSK 'Create component' 2015-09-03 PDBJ
SSK 'Modify model coordinates code' 2017-10-04 PDBJ
SSK 'Initial release' 2017-10-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
SSK N1 N 3.805 0.375 1
SSK C8 C 5.104 -0.375 2
SSK C9 C 5.104 -1.875 3
SSK C14 C 6.404 -2.625 4
SSK C13 C 6.404 -4.125 5
SSK C12 C 5.104 -4.875 6
SSK C11 C 3.805 -4.125 7
SSK C10 C 3.805 -2.625 8
SSK C1 C 6.404 0.375 9
SSK C2 C 6.404 1.875 10
SSK C7 C 7.702 2.625 11
SSK C6 C 7.702 4.125 12
SSK C5 C 6.404 4.875 13
SSK C4 C 5.104 4.125 14
SSK C3 C 5.104 2.625 15
SSK N2 N 7.702 -0.375 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
SSK C11 C10 DOUBLE NONE 1
SSK C11 C12 SINGLE NONE 2
SSK C10 C9 SINGLE NONE 3
SSK C12 C13 DOUBLE NONE 4
SSK C9 C8 SINGLE NONE 5
SSK C9 C14 DOUBLE NONE 6
SSK C8 N1 SINGLE BEGINDASH 7
SSK C8 C1 SINGLE NONE 8
SSK C13 C14 SINGLE NONE 9
SSK C1 N2 SINGLE BEGINDASH 10
SSK C1 C2 SINGLE NONE 11
SSK C7 C2 DOUBLE NONE 12
SSK C7 C6 SINGLE NONE 13
SSK C2 C3 SINGLE NONE 14
SSK C6 C5 DOUBLE NONE 15
SSK C3 C4 DOUBLE NONE 16
SSK C5 C4 SINGLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
SSK MurckoScaffold S1 scaffold c1ccc(CCc2ccccc2)cc1 InChI=1S/C14H14/c1-3-7-13(8-4-1)11-12-14-9-5-2-6-10-14/h1-10H,11-12H2 QWUWMCYKGHVNAV-UHFFFAOYSA-N
SSK phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
SSK C8 S1 1
SSK C9 S1 1
SSK C14 S1 1
SSK C13 S1 1
SSK C12 S1 1
SSK C11 S1 1
SSK C10 S1 1
SSK C1 S1 1
SSK C2 S1 1
SSK C7 S1 1
SSK C6 S1 1
SSK C5 S1 1
SSK C4 S1 1
SSK C3 S1 1
SSK C9 F1 1
SSK C10 F1 1
SSK C11 F1 1
SSK C12 F1 1
SSK C13 F1 1
SSK C14 F1 1
SSK C2 F1 2
SSK C7 F1 2
SSK C6 F1 2
SSK C5 F1 2
SSK C4 F1 2
SSK C3 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id SSK
_pdbe_chem_comp_rdkit_properties.exactmw 212.131
_pdbe_chem_comp_rdkit_properties.amw 212.296
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 118.610
_pdbe_chem_comp_rdkit_properties.tpsa 52.040
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.277
_pdbe_chem_comp_rdkit_properties.CrippenMR 66.209
_pdbe_chem_comp_rdkit_properties.chi0v 7.894
_pdbe_chem_comp_rdkit_properties.chi1v 4.197
_pdbe_chem_comp_rdkit_properties.chi2v 1.698
_pdbe_chem_comp_rdkit_properties.chi3v 1.698
_pdbe_chem_comp_rdkit_properties.chi4v 0.974
_pdbe_chem_comp_rdkit_properties.chi0n 23.894
_pdbe_chem_comp_rdkit_properties.chi1n 11.986
_pdbe_chem_comp_rdkit_properties.chi2n 1.698
_pdbe_chem_comp_rdkit_properties.chi3n 1.698
_pdbe_chem_comp_rdkit_properties.chi4n 0.974
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.640
_pdbe_chem_comp_rdkit_properties.kappa1 2.606
_pdbe_chem_comp_rdkit_properties.kappa2 4.924
_pdbe_chem_comp_rdkit_properties.kappa3 2.296
_pdbe_chem_comp_rdkit_properties.Phi 0.802
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
SSK UniChem ZINC ZINC000038192988
SSK UniChem eMolecules 501134
SSK UniChem SureChEMBL SCHEMBL150159
SSK UniChem ChemicalBook CB1370520
SSK UniChem ChemicalBook CB7280278
SSK UniChem 'EPA CompTox Dashboard' DTXSID20426127
SSK UniChem 'PubChem TPHARMA' 15924165
SSK UniChem PubChem 6931238
SSK UniChem ACTor 29841-69-8
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
SSK N1 1.321 -2.464 -1.461 ETKDGv3 1
SSK C8 0.659 -1.575 -0.500 ETKDGv3 2
SSK C9 1.508 -0.336 -0.278 ETKDGv3 3
SSK C14 1.857 0.470 -1.301 ETKDGv3 4
SSK C13 2.646 1.694 -1.053 ETKDGv3 5
SSK C12 3.010 2.017 0.193 ETKDGv3 6
SSK C11 2.624 1.149 1.323 ETKDGv3 7
SSK C10 1.915 0.036 1.103 ETKDGv3 8
SSK C1 -0.782 -1.207 -0.955 ETKDGv3 9
SSK C2 -1.450 -0.236 0.008 ETKDGv3 10
SSK C7 -1.700 -0.572 1.290 ETKDGv3 11
SSK C6 -2.317 0.403 2.213 ETKDGv3 12
SSK C5 -2.626 1.631 1.783 ETKDGv3 13
SSK C4 -2.352 2.014 0.384 ETKDGv3 14
SSK C3 -1.797 1.132 -0.457 ETKDGv3 15
SSK N2 -1.593 -2.415 -1.132 ETKDGv3 16
SSK H1 1.182 -2.107 -2.435 ETKDGv3 17
SSK H2 0.870 -3.407 -1.414 ETKDGv3 18
SSK H4 0.587 -2.126 0.465 ETKDGv3 19
SSK H5 1.558 0.243 -2.316 ETKDGv3 20
SSK H6 2.924 2.331 -1.882 ETKDGv3 21
SSK H7 3.585 2.916 0.376 ETKDGv3 22
SSK H8 2.915 1.418 2.330 ETKDGv3 23
SSK H9 1.632 -0.588 1.941 ETKDGv3 24
SSK H10 -0.706 -0.717 -1.952 ETKDGv3 25
SSK H11 -1.443 -1.552 1.671 ETKDGv3 26
SSK H12 -2.514 0.122 3.239 ETKDGv3 27
SSK H13 -3.076 2.347 2.459 ETKDGv3 28
SSK H14 -2.600 3.010 0.041 ETKDGv3 29
SSK H15 -1.597 1.428 -1.479 ETKDGv3 30
SSK H16 -1.686 -2.922 -0.222 ETKDGv3 31
SSK H17 -2.554 -2.135 -1.437 ETKDGv3 32
#