data_SHU
#
_chem_comp.id SHU
_chem_comp.name '4,6-DIOXOHEPTANOIC ACID'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C7 H10 O4'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms SUCCINYLACETONE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2001-07-09
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 158.152
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SHU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1H7R
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SHU C4 C4 C 0 1 N N N N N N 19.622 24.700 15.940 -0.010 0.000 0.639 C4 SHU 1
SHU C5 C5 C 0 1 N N N N N N 19.678 25.142 17.388 -0.912 0.000 1.846 C5 SHU 2
SHU C6 C6 C 0 1 N N N N N N 19.128 24.075 18.328 -0.075 0.000 3.099 C6 SHU 3
SHU O6 O6 O 0 1 N N N N N N 18.491 24.326 19.367 1.129 0.000 3.020 O6 SHU 4
SHU C7 C7 C 0 1 N N N N N N 19.387 22.619 17.952 -0.742 0.000 4.451 C7 SHU 5
SHU C3 C3 C 0 1 N N N N N N 19.973 25.737 14.880 -0.603 0.000 -0.745 C3 SHU 6
SHU C2 C2 C 0 1 N N N N N N 21.470 25.969 14.830 0.521 0.000 -1.782 C2 SHU 7
SHU C1 C1 C 0 1 N N N N N N 21.864 26.956 13.751 -0.072 0.000 -3.167 C1 SHU 8
SHU O1 O1 O 0 1 N N N N N N 21.051 27.836 13.404 -1.272 0.000 -3.310 O1 SHU 9
SHU OH1 OH1 O 0 1 N N N N N N 23.005 26.854 13.249 0.731 0.000 -4.242 OH1 SHU 10
SHU O4L O4L O 0 1 N Y N N N N 19.335 23.482 15.614 1.189 0.000 0.782 O4L SHU 11
SHU HC51 1HC5 H 0 0 N N N N N N 19.160 26.118 17.535 -1.541 -0.890 1.829 HC51 SHU 12
SHU HC52 2HC5 H 0 0 N N N N N N 20.710 25.447 17.680 -1.541 0.890 1.829 HC52 SHU 13
SHU HC1 1HC H 0 1 N N N N N N 18.985 21.839 18.639 0.018 0.000 5.231 HC1 SHU 14
SHU HC2 2HC H 0 1 N N N N N N 20.482 22.461 17.810 -1.364 0.890 4.549 HC2 SHU 15
SHU HC3 3HC H 0 1 N N N N N N 19.015 22.431 16.918 -1.364 -0.890 4.549 HC3 SHU 16
SHU HC31 1HC3 H 0 0 N N N N N N 19.413 26.689 15.032 -1.219 -0.890 -0.876 HC31 SHU 17
SHU HC32 2HC3 H 0 0 N N N N N N 19.565 25.460 13.880 -1.219 0.890 -0.876 HC32 SHU 18
SHU HC21 1HC2 H 0 0 N N N N N N 22.023 25.007 14.717 1.136 0.890 -1.651 HC21 SHU 19
SHU HC22 2HC2 H 0 0 N N N N N N 21.862 26.283 15.825 1.136 -0.890 -1.651 HC22 SHU 20
SHU HH1 HH1 H 0 1 N N N N N N 23.252 27.473 12.572 0.350 0.000 -5.131 HH1 SHU 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SHU C4 C5 SING N N 1
SHU C4 C3 SING N N 2
SHU C4 O4L DOUB N N 3
SHU C5 C6 SING N N 4
SHU C5 HC51 SING N N 5
SHU C5 HC52 SING N N 6
SHU C6 O6 DOUB N N 7
SHU C6 C7 SING N N 8
SHU C7 HC1 SING N N 9
SHU C7 HC2 SING N N 10
SHU C7 HC3 SING N N 11
SHU C3 C2 SING N N 12
SHU C3 HC31 SING N N 13
SHU C3 HC32 SING N N 14
SHU C2 C1 SING N N 15
SHU C2 HC21 SING N N 16
SHU C2 HC22 SING N N 17
SHU C1 O1 DOUB N N 18
SHU C1 OH1 SING N N 19
SHU OH1 HH1 SING N N 20
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SHU SMILES ACDLabs 10.04 'O=C(CC(=O)C)CCC(=O)O'
SHU SMILES_CANONICAL CACTVS 3.341 'CC(=O)CC(=O)CCC(O)=O'
SHU SMILES CACTVS 3.341 'CC(=O)CC(=O)CCC(O)=O'
SHU SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'CC(=O)CC(=O)CCC(=O)O'
SHU SMILES 'OpenEye OEToolkits' 1.5.0 'CC(=O)CC(=O)CCC(=O)O'
SHU InChI InChI 1.03 'InChI=1S/C7H10O4/c1-5(8)4-6(9)2-3-7(10)11/h2-4H2,1H3,(H,10,11)'
SHU InChIKey InChI 1.03 WYEPBHZLDUPIOD-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SHU 'SYSTEMATIC NAME' ACDLabs 10.04 '4,6-dioxoheptanoic acid'
SHU 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '4,6-dioxoheptanoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SHU 'Create component' 2001-07-09 EBI
SHU 'Modify descriptor' 2011-06-04 RCSB
SHU 'Modify synonyms' 2021-03-01 PDBE
SHU 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id SHU
_pdbx_chem_comp_synonyms.name SUCCINYLACETONE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id SHU
_pdbx_chem_comp_pcm.modified_residue_id LYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category Lipid/lipid-like
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C4
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_synonyms.comp_id SHU
_pdbe_chem_comp_synonyms.name SUCCINYLACETONE
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
SHU C4 C 9.002 -0.375 1
SHU C5 C 10.301 0.375 2
SHU C6 C 11.600 -0.375 3
SHU O6 O 11.600 -1.875 4
SHU C7 C 12.899 0.375 5
SHU C3 C 7.702 0.375 6
SHU C2 C 6.404 -0.375 7
SHU C1 C 5.104 0.375 8
SHU O1 O 3.805 -0.375 9
SHU OH1 O 5.104 1.875 10
SHU O4L O 9.002 -1.875 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
SHU C4 C5 SINGLE NONE 1
SHU C4 C3 SINGLE NONE 2
SHU C4 O4L DOUBLE NONE 3
SHU C5 C6 SINGLE NONE 4
SHU C6 O6 DOUBLE NONE 5
SHU C6 C7 SINGLE NONE 6
SHU C3 C2 SINGLE NONE 7
SHU C2 C1 SINGLE NONE 8
SHU C1 O1 DOUBLE NONE 9
SHU C1 OH1 SINGLE NONE 10
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id SHU
_pdbe_chem_comp_rdkit_properties.exactmw 158.058
_pdbe_chem_comp_rdkit_properties.amw 158.153
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.571
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 78.344
_pdbe_chem_comp_rdkit_properties.tpsa 71.440
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.399
_pdbe_chem_comp_rdkit_properties.CrippenMR 37.175
_pdbe_chem_comp_rdkit_properties.chi0v 5.133
_pdbe_chem_comp_rdkit_properties.chi1v 2.316
_pdbe_chem_comp_rdkit_properties.chi2v 0.505
_pdbe_chem_comp_rdkit_properties.chi3v 0.505
_pdbe_chem_comp_rdkit_properties.chi4v 0.242
_pdbe_chem_comp_rdkit_properties.chi0n 15.133
_pdbe_chem_comp_rdkit_properties.chi1n 7.225
_pdbe_chem_comp_rdkit_properties.chi2n 0.505
_pdbe_chem_comp_rdkit_properties.chi3n 0.505
_pdbe_chem_comp_rdkit_properties.chi4n 0.242
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.190
_pdbe_chem_comp_rdkit_properties.kappa1 2.152
_pdbe_chem_comp_rdkit_properties.kappa2 4.599
_pdbe_chem_comp_rdkit_properties.kappa3 6.698
_pdbe_chem_comp_rdkit_properties.Phi 0.900
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
SHU UniChem ChEBI 87897
SHU UniChem ZINC ZINC000100036983
SHU UniChem eMolecules 536931
SHU UniChem fdasrs KZ0KV2Q190
SHU UniChem SureChEMBL SCHEMBL503918
SHU UniChem HMDB HMDB0000635
SHU UniChem MetaboLights MTBLC87897
SHU UniChem BRENDA 11029
SHU UniChem ChemicalBook CB1385063
SHU UniChem MedChemExpress HY-W010184
SHU UniChem 'Probes And Drugs' PD001388
SHU UniChem 'EPA CompTox Dashboard' DTXSID50199519
SHU UniChem 'PubChem TPHARMA' 14748001
SHU UniChem PubChem 5312
SHU UniChem ACTor 51568-18-4
SHU UniChem Nikkaji J228.073F
SHU UniChem BindingDb 50197063
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
SHU C4 -0.019 0.211 -0.020 ETKDGv3 1
SHU C5 1.286 -0.533 0.056 ETKDGv3 2
SHU C6 2.396 0.303 -0.520 ETKDGv3 3
SHU O6 2.433 0.505 -1.724 ETKDGv3 4
SHU C7 3.460 0.897 0.354 ETKDGv3 5
SHU C3 -1.090 -0.195 -1.001 ETKDGv3 6
SHU C2 -2.230 -0.958 -0.316 ETKDGv3 7
SHU C1 -3.036 -0.070 0.582 ETKDGv3 8
SHU O1 -3.891 0.715 0.092 ETKDGv3 9
SHU OH1 -2.817 -0.091 1.956 ETKDGv3 10
SHU O4L -0.208 1.167 0.718 ETKDGv3 11
SHU HC51 1.490 -0.791 1.117 ETKDGv3 12
SHU HC52 1.227 -1.490 -0.505 ETKDGv3 13
SHU HC1 4.453 0.503 0.051 ETKDGv3 14
SHU HC2 3.291 0.650 1.423 ETKDGv3 15
SHU HC3 3.458 2.001 0.243 ETKDGv3 16
SHU HC31 -0.651 -0.851 -1.783 ETKDGv3 17
SHU HC32 -1.484 0.706 -1.518 ETKDGv3 18
SHU HC21 -2.901 -1.380 -1.096 ETKDGv3 19
SHU HC22 -1.819 -1.810 0.268 ETKDGv3 20
SHU HH1 -3.345 0.513 2.575 ETKDGv3 21
#