data_SFK
#
_chem_comp.id SFK
_chem_comp.name N-(4-methylpentanoyl)-L-phenylalanine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H21 N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-04-15
_chem_comp.pdbx_modified_date 2013-04-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 263.332
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SFK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4K3K
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SFK CAR CAR C 0 1 N N N N N N -20.373 0.955 -23.362 -4.369 2.137 0.497 CAR SFK 1
SFK CAQ CAQ C 0 1 N N N N N N -21.403 1.834 -24.081 -4.654 0.654 0.251 CAQ SFK 2
SFK CAS CAS C 0 1 N N N N N N -20.818 2.356 -25.410 -5.874 0.514 -0.661 CAS SFK 3
SFK CAP CAP C 0 1 N N N N N N -22.619 0.986 -24.352 -3.441 0.005 -0.417 CAP SFK 4
SFK CAO CAO C 0 1 N N N N N N -23.716 1.963 -24.724 -2.252 0.035 0.546 CAO SFK 5
SFK CAM CAM C 0 1 N N N N N N -24.929 1.057 -24.994 -1.056 -0.604 -0.112 CAM SFK 6
SFK OAN OAN O 0 1 N N N N N N -24.999 0.409 -26.034 -1.146 -1.040 -1.241 OAN SFK 7
SFK N N N 0 1 N N N N N N -25.843 0.998 -24.012 0.113 -0.691 0.553 N SFK 8
SFK CA CA C 0 1 N N S N N N -27.060 0.169 -24.120 1.275 -1.312 -0.087 CA SFK 9
SFK C C C 0 1 N N N N N N -28.188 0.864 -23.358 1.219 -2.805 0.109 C SFK 10
SFK O O O 0 1 N N N N N N -29.301 0.299 -23.357 0.301 -3.299 0.721 O SFK 11
SFK OXT OXT O 0 1 N N N N N N -27.900 1.923 -22.759 2.187 -3.585 -0.396 OXT SFK 12
SFK CB CB C 0 1 N N N N N N -26.864 -1.254 -23.590 2.557 -0.763 0.542 CB SFK 13
SFK CG CG C 0 1 Y N N N N N -26.211 -1.211 -22.326 2.675 0.709 0.240 CG SFK 14
SFK CD1 CD1 C 0 1 Y N N N N N -26.946 -1.073 -21.142 3.325 1.130 -0.905 CD1 SFK 15
SFK CE1 CE1 C 0 1 Y N N N N N -26.312 -1.055 -19.902 3.433 2.480 -1.182 CE1 SFK 16
SFK CZ CZ C 0 1 Y N N N N N -24.928 -1.169 -19.832 2.891 3.409 -0.315 CZ SFK 17
SFK CE2 CE2 C 0 1 Y N N N N N -24.183 -1.312 -21.001 2.240 2.988 0.830 CE2 SFK 18
SFK CD2 CD2 C 0 1 Y N N N N N -24.822 -1.342 -22.241 2.128 1.638 1.105 CD2 SFK 19
SFK H1 H1 H 0 1 N N N N N N -20.799 0.588 -22.417 -5.234 2.599 0.973 H1 SFK 20
SFK H2 H2 H 0 1 N N N N N N -20.111 0.100 -24.002 -3.500 2.237 1.147 H2 SFK 21
SFK H3 H3 H 0 1 N N N N N N -19.470 1.546 -23.152 -4.171 2.632 -0.454 H3 SFK 22
SFK H4 H4 H 0 1 N N N N N N -21.674 2.686 -23.440 -4.853 0.160 1.202 H4 SFK 23
SFK H5 H5 H 0 1 N N N N N N -19.931 2.974 -25.204 -5.676 1.008 -1.612 H5 SFK 24
SFK H6 H6 H 0 1 N N N N N N -20.532 1.504 -26.044 -6.077 -0.543 -0.836 H6 SFK 25
SFK H7 H7 H 0 1 N N N N N N -21.574 2.962 -25.930 -6.739 0.976 -0.185 H7 SFK 26
SFK H8 H8 H 0 1 N N N N N N -22.899 0.417 -23.454 -3.675 -1.028 -0.673 H8 SFK 27
SFK H9 H9 H 0 1 N N N N N N -22.426 0.290 -25.182 -3.188 0.556 -1.324 H9 SFK 28
SFK H10 H10 H 0 1 N N N N N N -23.445 2.535 -25.624 -2.017 1.068 0.802 H10 SFK 29
SFK H11 H11 H 0 1 N N N N N N -23.921 2.658 -23.896 -2.505 -0.515 1.452 H11 SFK 30
SFK H12 H12 H 0 1 N N N N N N -25.695 1.533 -23.180 0.185 -0.342 1.455 H12 SFK 31
SFK H13 H13 H 0 1 N N N N N N -27.351 0.103 -25.179 1.268 -1.085 -1.153 H13 SFK 32
SFK H14 H14 H 0 1 N N N N N N -28.664 2.242 -22.294 2.108 -4.537 -0.244 H14 SFK 33
SFK H15 H15 H 0 1 N N N N N N -27.844 -1.741 -23.478 2.525 -0.911 1.621 H15 SFK 34
SFK H16 H16 H 0 1 N N N N N N -26.249 -1.827 -24.300 3.418 -1.289 0.129 H16 SFK 35
SFK H17 H17 H 0 1 N N N N N N -28.021 -0.979 -21.191 3.749 0.404 -1.583 H17 SFK 36
SFK H18 H18 H 0 1 N N N N N N -26.894 -0.953 -18.998 3.942 2.808 -2.077 H18 SFK 37
SFK H19 H19 H 0 1 N N N N N N -24.431 -1.147 -18.873 2.975 4.464 -0.531 H19 SFK 38
SFK H20 H20 H 0 1 N N N N N N -23.108 -1.400 -20.947 1.816 3.714 1.509 H20 SFK 39
SFK H21 H21 H 0 1 N N N N N N -24.239 -1.467 -23.142 1.616 1.309 1.997 H21 SFK 40
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SFK OAN CAM DOUB N N 1
SFK CAS CAQ SING N N 2
SFK CAM CAO SING N N 3
SFK CAM N SING N N 4
SFK CAO CAP SING N N 5
SFK CAP CAQ SING N N 6
SFK CA N SING N N 7
SFK CA CB SING N N 8
SFK CA C SING N N 9
SFK CAQ CAR SING N N 10
SFK CB CG SING N N 11
SFK C O DOUB N N 12
SFK C OXT SING N N 13
SFK CG CD2 DOUB Y N 14
SFK CG CD1 SING Y N 15
SFK CD2 CE2 SING Y N 16
SFK CD1 CE1 DOUB Y N 17
SFK CE2 CZ DOUB Y N 18
SFK CE1 CZ SING Y N 19
SFK CAR H1 SING N N 20
SFK CAR H2 SING N N 21
SFK CAR H3 SING N N 22
SFK CAQ H4 SING N N 23
SFK CAS H5 SING N N 24
SFK CAS H6 SING N N 25
SFK CAS H7 SING N N 26
SFK CAP H8 SING N N 27
SFK CAP H9 SING N N 28
SFK CAO H10 SING N N 29
SFK CAO H11 SING N N 30
SFK N H12 SING N N 31
SFK CA H13 SING N N 32
SFK OXT H14 SING N N 33
SFK CB H15 SING N N 34
SFK CB H16 SING N N 35
SFK CD1 H17 SING N N 36
SFK CE1 H18 SING N N 37
SFK CZ H19 SING N N 38
SFK CE2 H20 SING N N 39
SFK CD2 H21 SING N N 40
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SFK SMILES ACDLabs 12.01 O=C(O)C(NC(=O)CCC(C)C)Cc1ccccc1
SFK InChI InChI 1.03 InChI=1S/C15H21NO3/c1-11(2)8-9-14(17)16-13(15(18)19)10-12-6-4-3-5-7-12/h3-7,11,13H,8-10H2,1-2H3,(H,16,17)(H,18,19)/t13-/m0/s1
SFK InChIKey InChI 1.03 SNFOUMUDOQSPKF-ZDUSSCGKSA-N
SFK SMILES_CANONICAL CACTVS 3.370 CC(C)CCC(=O)N[C@@H](Cc1ccccc1)C(O)=O
SFK SMILES CACTVS 3.370 CC(C)CCC(=O)N[CH](Cc1ccccc1)C(O)=O
SFK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CC(C)CCC(=O)N[C@@H](Cc1ccccc1)C(=O)O
SFK SMILES "OpenEye OEToolkits" 1.7.6 CC(C)CCC(=O)NC(Cc1ccccc1)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SFK "SYSTEMATIC NAME" ACDLabs 12.01 N-(4-methylpentanoyl)-L-phenylalanine
SFK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-(4-methylpentanoylamino)-3-phenyl-propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SFK 'Create component' 2013-04-15 PDBJ
SFK 'Initial release' 2013-05-01 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
SFK CAR C 6.897 6.000 1
SFK CAQ C 8.196 5.250 2
SFK CAS C 9.495 6.000 3
SFK CAP C 8.196 3.750 4
SFK CAO C 6.897 3.000 5
SFK CAM C 6.897 1.500 6
SFK OAN O 8.196 0.750 7
SFK N N 5.598 0.750 8
SFK CA C 5.598 -0.750 9
SFK C C 6.897 -1.500 10
SFK O O 8.196 -0.750 11
SFK OXT O 6.897 -3.000 12
SFK CB C 4.299 -1.500 13
SFK CG C 4.299 -3.000 14
SFK CD1 C 5.598 -3.750 15
SFK CE1 C 5.598 -5.250 16
SFK CZ C 4.299 -6.000 17
SFK CE2 C 3.000 -5.250 18
SFK CD2 C 3.000 -3.750 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
SFK OAN CAM DOUBLE NONE 1
SFK CAS CAQ SINGLE NONE 2
SFK CAM CAO SINGLE NONE 3
SFK CAM N SINGLE NONE 4
SFK CAO CAP SINGLE NONE 5
SFK CAP CAQ SINGLE NONE 6
SFK CA N SINGLE NONE 7
SFK CA CB SINGLE BEGINDASH 8
SFK CA C SINGLE NONE 9
SFK CAQ CAR SINGLE NONE 10
SFK CB CG SINGLE NONE 11
SFK C O DOUBLE NONE 12
SFK C OXT SINGLE NONE 13
SFK CG CD2 DOUBLE NONE 14
SFK CG CD1 SINGLE NONE 15
SFK CD2 CE2 SINGLE NONE 16
SFK CD1 CE1 DOUBLE NONE 17
SFK CE2 CZ DOUBLE NONE 18
SFK CE1 CZ SINGLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
SFK MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
SFK amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
SFK peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
SFK phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
SFK CG S1 1
SFK CD1 S1 1
SFK CE1 S1 1
SFK CZ S1 1
SFK CE2 S1 1
SFK CD2 S1 1
SFK N F1 1
SFK CAM F1 1
SFK OAN F1 1
SFK CAO F1 1
SFK O F2 1
SFK C F2 1
SFK CA F2 1
SFK N F2 1
SFK CG F3 1
SFK CD2 F3 1
SFK CE2 F3 1
SFK CZ F3 1
SFK CE1 F3 1
SFK CD1 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id SFK
_pdbe_chem_comp_rdkit_properties.exactmw 263.152
_pdbe_chem_comp_rdkit_properties.amw 263.337
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 40
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.467
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 143.032
_pdbe_chem_comp_rdkit_properties.tpsa 66.400
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.180
_pdbe_chem_comp_rdkit_properties.CrippenMR 73.519
_pdbe_chem_comp_rdkit_properties.chi0v 9.172
_pdbe_chem_comp_rdkit_properties.chi1v 4.560
_pdbe_chem_comp_rdkit_properties.chi2v 1.445
_pdbe_chem_comp_rdkit_properties.chi3v 1.445
_pdbe_chem_comp_rdkit_properties.chi4v 0.801
_pdbe_chem_comp_rdkit_properties.chi0n 30.172
_pdbe_chem_comp_rdkit_properties.chi1n 14.915
_pdbe_chem_comp_rdkit_properties.chi2n 1.445
_pdbe_chem_comp_rdkit_properties.chi3n 1.445
_pdbe_chem_comp_rdkit_properties.chi4n 0.801
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.840
_pdbe_chem_comp_rdkit_properties.kappa1 3.077
_pdbe_chem_comp_rdkit_properties.kappa2 7.563
_pdbe_chem_comp_rdkit_properties.kappa3 6.041
_pdbe_chem_comp_rdkit_properties.Phi 1.225
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
SFK UniChem SureChEMBL SCHEMBL8138539
SFK UniChem PubChem 28777137
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
SFK CAR 5.248 -0.885 -1.735 ETKDGv3 1
SFK CAQ 4.711 -0.067 -0.553 ETKDGv3 2
SFK CAS 5.130 -0.728 0.769 ETKDGv3 3
SFK CAP 3.177 0.079 -0.664 ETKDGv3 4
SFK CAO 2.603 1.094 0.334 ETKDGv3 5
SFK CAM 1.139 1.299 0.086 ETKDGv3 6
SFK OAN 0.757 2.287 -0.599 ETKDGv3 7
SFK N 0.184 0.353 0.589 ETKDGv3 8
SFK CA -1.256 0.501 0.359 ETKDGv3 9
SFK C -1.793 1.623 1.203 ETKDGv3 10
SFK O -1.532 1.673 2.435 ETKDGv3 11
SFK OXT -2.606 2.593 0.626 ETKDGv3 12
SFK CB -1.986 -0.819 0.673 ETKDGv3 13
SFK CG -3.440 -0.761 0.278 ETKDGv3 14
SFK CD1 -3.827 -0.969 -1.139 ETKDGv3 15
SFK CE1 -5.111 -0.884 -1.508 ETKDGv3 16
SFK CZ -6.151 -0.579 -0.503 ETKDGv3 17
SFK CE2 -5.808 -0.383 0.775 ETKDGv3 18
SFK CD2 -4.391 -0.472 1.186 ETKDGv3 19
SFK H1 4.812 -1.907 -1.734 ETKDGv3 20
SFK H2 4.992 -0.387 -2.695 ETKDGv3 21
SFK H3 6.354 -0.965 -1.678 ETKDGv3 22
SFK H4 5.176 0.943 -0.604 ETKDGv3 23
SFK H5 6.229 -0.891 0.787 ETKDGv3 24
SFK H6 4.880 -0.075 1.631 ETKDGv3 25
SFK H7 4.623 -1.709 0.896 ETKDGv3 26
SFK H8 2.924 0.424 -1.692 ETKDGv3 27
SFK H9 2.691 -0.911 -0.512 ETKDGv3 28
SFK H10 3.135 2.065 0.235 ETKDGv3 29
SFK H11 2.737 0.732 1.375 ETKDGv3 30
SFK H12 0.539 -0.465 1.137 ETKDGv3 31
SFK H13 -1.420 0.739 -0.716 ETKDGv3 32
SFK H14 -2.989 3.348 1.183 ETKDGv3 33
SFK H15 -1.500 -1.645 0.109 ETKDGv3 34
SFK H16 -1.882 -1.066 1.754 ETKDGv3 35
SFK H17 -3.070 -1.189 -1.882 ETKDGv3 36
SFK H18 -5.391 -1.037 -2.542 ETKDGv3 37
SFK H19 -7.188 -0.512 -0.805 ETKDGv3 38
SFK H20 -6.568 -0.155 1.512 ETKDGv3 39
SFK H21 -4.132 -0.295 2.222 ETKDGv3 40
#