data_SAR
#
_chem_comp.id SAR
_chem_comp.name SARCOSINE
_chem_comp.type 'PEPTIDE LINKING'
_chem_comp.pdbx_type ATOMP
_chem_comp.formula 'C3 H7 N O2'
_chem_comp.mon_nstd_parent_comp_id GLY
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces MGY
_chem_comp.formula_weight 89.093
_chem_comp.one_letter_code G
_chem_comp.three_letter_code SAR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SAR N N N 0 1 N N N Y Y N 45.346 99.027 28.101 1.376 -0.391 -0.022 N SAR 1
SAR CA CA C 0 1 N N N Y N N 45.601 99.706 26.834 0.333 0.644 0.002 CA SAR 2
SAR C C C 0 1 N N N Y N Y 46.937 100.430 26.842 -1.024 -0.011 -0.005 C SAR 3
SAR O O O 0 1 N N N Y N Y 47.878 99.899 26.239 -1.114 -1.216 -0.027 O SAR 4
SAR CN CN C 0 1 N N N N N N 46.442 98.097 28.524 2.716 0.212 -0.015 CN SAR 5
SAR OXT OXT O 0 1 N Y N Y N Y 47.131 101.584 27.485 -2.134 0.744 0.014 OXT SAR 6
SAR H HN H 0 1 N Y N Y Y N 45.242 99.724 28.810 1.265 -1.034 0.748 H SAR 7
SAR HA2 HA1 H 0 1 N N N Y N N 45.610 98.958 26.028 0.441 1.247 0.903 HA2 SAR 8
SAR HA3 HA2 H 0 1 N N N Y N N 44.802 100.442 26.661 0.434 1.281 -0.877 HA3 SAR 9
SAR HN1 HN1 H 0 1 N N N N N N 46.176 97.627 29.482 2.833 0.846 -0.894 HN1 SAR 10
SAR HN2 HN2 H 0 1 N N N N N N 46.577 97.318 27.759 2.840 0.812 0.886 HN2 SAR 11
SAR HN3 HN3 H 0 1 N N N N N N 47.378 98.663 28.641 3.468 -0.577 -0.033 HN3 SAR 12
SAR HXT HXT H 0 1 N Y N Y N Y 48.035 101.857 27.381 -2.981 0.280 0.008 HXT SAR 13
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SAR N CA SING N N 1
SAR N CN SING N N 2
SAR N H SING N N 3
SAR CA C SING N N 4
SAR CA HA2 SING N N 5
SAR CA HA3 SING N N 6
SAR C O DOUB N N 7
SAR C OXT SING N N 8
SAR CN HN1 SING N N 9
SAR CN HN2 SING N N 10
SAR CN HN3 SING N N 11
SAR OXT HXT SING N N 12
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SAR SMILES ACDLabs 12.01 'O=C(O)CNC'
SAR SMILES_CANONICAL CACTVS 3.370 'CNCC(O)=O'
SAR SMILES CACTVS 3.370 'CNCC(O)=O'
SAR SMILES_CANONICAL 'OpenEye OEToolkits' 1.7.0 'CNCC(=O)O'
SAR SMILES 'OpenEye OEToolkits' 1.7.0 'CNCC(=O)O'
SAR InChI InChI 1.03 'InChI=1S/C3H7NO2/c1-4-2-3(5)6/h4H,2H2,1H3,(H,5,6)'
SAR InChIKey InChI 1.03 FSYKKLYZXJSNPZ-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SAR 'SYSTEMATIC NAME' ACDLabs 12.01 N-methylglycine
SAR 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.7.0 '2-(methylamino)ethanoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SAR 'Create component' 1999-07-08 PDBJ
SAR 'Modify leaving atom flag' 2011-02-07 RCSB
SAR 'Modify descriptor' 2011-06-04 RCSB
SAR 'Modify backbone' 2023-11-03 PDBE
SAR 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id SAR
_pdbx_chem_comp_pcm.modified_residue_id GLY
_pdbx_chem_comp_pcm.type Methylation
_pdbx_chem_comp_pcm.category 'Named protein modification'
_pdbx_chem_comp_pcm.position 'Amino-acid backbone'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0483
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id SAR
_pdbe_chem_comp_drugbank_details.drugbank_id DB12519
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Sarcosine
_pdbe_chem_comp_drugbank_details.description 'Sarcosine has been investigated for the treatment of Schizophrenia.'
_pdbe_chem_comp_drugbank_details.cas_number 107-97-1
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id SAR
_pdbe_chem_comp_drugbank_classification.drugbank_id DB12519
_pdbe_chem_comp_drugbank_classification.parent 'Alpha amino acids'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as alpha amino acids. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon).'
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
SAR N N 6.897 0.347 1
SAR CA C 5.598 1.097 2
SAR C C 4.299 0.347 3
SAR O O 3.000 1.097 4
SAR CN C 8.196 -0.403 5
SAR OXT O 4.299 -1.153 6
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
SAR N CA SINGLE NONE 1
SAR N CN SINGLE NONE 2
SAR CA C SINGLE NONE 3
SAR C O DOUBLE NONE 4
SAR C OXT SINGLE NONE 5
#
_pdbe_chem_comp_substructure.comp_id SAR
_pdbe_chem_comp_substructure.substructure_name peptide
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles NCC=O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2
_pdbe_chem_comp_substructure.substructure_inchikeys LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
SAR O F1 1
SAR C F1 1
SAR CA F1 1
SAR N F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id SAR
_pdbe_chem_comp_rdkit_properties.exactmw 89.048
_pdbe_chem_comp_rdkit_properties.amw 89.094
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 6
_pdbe_chem_comp_rdkit_properties.NumAtoms 13
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.667
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 45.954
_pdbe_chem_comp_rdkit_properties.tpsa 49.330
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.710
_pdbe_chem_comp_rdkit_properties.CrippenMR 21.562
_pdbe_chem_comp_rdkit_properties.chi0v 2.764
_pdbe_chem_comp_rdkit_properties.chi1v 1.105
_pdbe_chem_comp_rdkit_properties.chi2v 0.147
_pdbe_chem_comp_rdkit_properties.chi3v 0.147
_pdbe_chem_comp_rdkit_properties.chi4v 0.046
_pdbe_chem_comp_rdkit_properties.chi0n 9.764
_pdbe_chem_comp_rdkit_properties.chi1n 4.461
_pdbe_chem_comp_rdkit_properties.chi2n 0.147
_pdbe_chem_comp_rdkit_properties.chi3n 0.147
_pdbe_chem_comp_rdkit_properties.chi4n 0.046
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.570
_pdbe_chem_comp_rdkit_properties.kappa1 0.816
_pdbe_chem_comp_rdkit_properties.kappa2 2.656
_pdbe_chem_comp_rdkit_properties.kappa3 3.430
_pdbe_chem_comp_rdkit_properties.Phi 0.361
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
SAR UniChem DrugBank DB12519
SAR UniChem 'Guide to Pharmacology' 4713
SAR UniChem 'PubChem DOTF' 57304408
SAR UniChem 'KEGG LIGAND' C00213
SAR UniChem ChEBI 15611
SAR UniChem ChEBI 57433
SAR UniChem ZINC ZINC000004658561
SAR UniChem fdasrs Z711V88R5F
SAR UniChem HMDB HMDB0000271
SAR UniChem NMRShiftDB 10016973
SAR UniChem LINCS LSM-45898
SAR UniChem ACTor 107-97-1
SAR UniChem Recon sarcs
SAR UniChem Nikkaji J5.067I
SAR UniChem BindingDb 50017225
SAR UniChem MetaboLights MTBLC15611
SAR UniChem MetaboLights MTBLC57433
SAR UniChem BRENDA 119072
SAR UniChem BRENDA 2750
SAR UniChem BRENDA 50132
SAR UniChem BRENDA 594
SAR UniChem Rhea 57433
SAR UniChem ChemicalBook CB9712144
SAR UniChem ClinicalTrials SARCOSINE
SAR UniChem rxnorm SARCOSINE
SAR UniChem MedChemExpress HY-101037
SAR UniChem 'Probes And Drugs' PD047812
SAR UniChem CCDC YIHHON
SAR UniChem 'EPA CompTox Dashboard' DTXSID1047025
SAR UniChem eMolecules 480611
SAR UniChem SureChEMBL SCHEMBL149
SAR UniChem 'PubChem TPHARMA' 14842807
SAR UniChem PubChem 1088
SAR UniChem PubChem 7311726
SAR UniChem Mcule MCULE-4484444573
SAR UniChem ACTor 25951-24-0
SAR UniChem ACTor 68411-97-2
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
SAR N -0.648 0.569 0.359 ETKDGv3 1
SAR CA 0.307 -0.520 0.131 ETKDGv3 2
SAR C 1.663 0.047 -0.141 ETKDGv3 3
SAR O 2.028 0.268 -1.327 ETKDGv3 4
SAR CN -1.955 0.026 0.732 ETKDGv3 5
SAR OXT 2.502 0.376 0.918 ETKDGv3 6
SAR H -0.771 1.088 -0.543 ETKDGv3 7
SAR HA2 -0.014 -1.149 -0.731 ETKDGv3 8
SAR HA3 0.374 -1.168 1.034 ETKDGv3 9
SAR HN1 -2.350 -0.644 -0.063 ETKDGv3 10
SAR HN2 -1.882 -0.532 1.691 ETKDGv3 11
SAR HN3 -2.672 0.862 0.876 ETKDGv3 12
SAR HXT 3.417 0.777 0.751 ETKDGv3 13
#