data_S7E
#
_chem_comp.id S7E
_chem_comp.name
4-[[4-[(4-azanyl-1-methyl-pyrrol-2-yl)carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]-~{N}-[2-[[(3~{S})-3-azanyl-4-oxidanylidene-butyl]carbamoyl]-1-methyl-imidazol-4-yl]-1-methyl-imidazole-2-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H32 N12 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-03-18
_chem_comp.pdbx_modified_date 2020-06-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 592.610
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S7E
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6M5B
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S7E C18 C1 C 0 1 Y N N N N N 3.724 1.496 18.173 5.103 0.770 0.038 C18 S7E 1
S7E C21 C2 C 0 1 Y N N N N N 1.384 1.645 13.429 8.181 -3.543 0.090 C21 S7E 2
S7E C22 C3 C 0 1 N N N N N N -1.171 -1.837 30.369 -7.797 -6.129 -0.396 C22 S7E 3
S7E C26 C4 C 0 1 N N N N N N -1.984 1.155 29.364 -7.181 0.008 -0.104 C26 S7E 4
S7E C27 C5 C 0 1 Y N N N N N 0.540 2.103 27.040 -4.155 1.937 -0.067 C27 S7E 5
S7E C29 C6 C 0 1 Y N N N N N 0.751 3.050 28.036 -5.065 2.950 -0.034 C29 S7E 6
S7E C30 C7 C 0 1 N N N N N N -0.293 3.559 30.202 -7.586 3.078 -0.017 C30 S7E 7
S7E C31 C8 C 0 1 Y N N N N N -0.865 1.778 28.570 -6.114 1.023 -0.082 C31 S7E 8
S7E C32 C9 C 0 1 N N N N N N 2.683 2.378 25.848 -2.214 3.316 -0.034 C32 S7E 9
S7E C34 C10 C 0 1 Y N N N N N 4.007 1.928 22.571 1.361 3.001 -0.047 C34 S7E 10
S7E C35 C11 C 0 1 Y N N N N N 5.160 2.279 23.263 1.257 4.358 -0.012 C35 S7E 11
S7E C36 C12 C 0 1 N N N N N N 5.717 2.836 25.586 -0.663 5.996 0.033 C36 S7E 12
S7E C37 C13 C 0 1 Y N N N N N 3.506 2.236 24.587 -0.749 3.470 -0.032 C37 S7E 13
S7E C38 C14 C 0 1 N N N N N N 5.081 1.580 20.353 3.741 2.909 -0.041 C38 S7E 14
S7E C39 C15 C 0 1 Y N N N N N 4.058 1.229 16.860 6.468 0.469 0.154 C39 S7E 15
S7E C40 C16 C 0 1 Y N N N N N 5.421 0.963 16.799 7.146 1.644 0.240 C40 S7E 16
S7E C41 C17 C 0 1 N N N N N N 7.277 0.839 18.388 6.587 4.093 0.242 C41 S7E 17
S7E C42 C18 C 0 1 Y N N N N N 4.917 1.354 18.870 4.988 2.144 0.058 C42 S7E 18
S7E C43 C19 C 0 1 N N N N N N 3.510 0.698 14.478 6.242 -1.905 0.082 C43 S7E 19
S7E C44 C20 C 0 1 Y N N N N N 2.498 0.815 13.365 6.838 -3.242 -0.008 C44 S7E 20
S7E C45 C21 C 0 1 Y N N N N N 0.731 1.480 12.221 8.304 -4.931 -0.059 C45 S7E 21
S7E C46 C22 C 0 1 Y N N N N N 1.473 0.565 11.483 7.058 -5.442 -0.236 C46 S7E 22
S7E C47 C23 C 0 1 N N N N N N 3.533 -0.755 11.765 4.708 -4.557 -0.361 C47 S7E 23
S7E C49 C24 C 0 1 N N S N N N -2.485 -2.604 30.440 -8.408 -4.762 -0.230 C49 S7E 24
S7E C50 C25 C 0 1 N N N N N N -3.566 -2.056 29.507 -7.300 -3.707 -0.207 C50 S7E 25
S7E C51 C26 C 0 1 N N N N N N -3.765 -0.542 29.559 -7.925 -2.311 -0.164 C51 S7E 26
S7E N12 N1 N 0 1 N N N N N N -2.723 0.076 28.760 -6.864 -1.301 -0.142 N12 S7E 27
S7E N13 N2 N 0 1 Y N N N N N -0.141 2.801 28.969 -6.300 2.376 -0.043 N13 S7E 28
S7E N14 N3 N 0 1 N N N N N N 1.294 1.959 25.823 -2.761 2.084 -0.065 N14 S7E 29
S7E N15 N4 N 0 1 Y N N N N N 4.805 2.462 24.515 -0.071 4.656 -0.002 N15 S7E 30
S7E N16 N5 N 0 1 N N N N N N 3.896 1.661 21.155 2.556 2.267 -0.062 N16 S7E 31
S7E N17 N6 N 0 1 Y N N N N N 5.887 1.060 18.030 6.254 2.668 0.182 N17 S7E 32
S7E N19 N7 N 0 1 N N N N N N 3.142 1.264 15.758 7.034 -0.819 0.177 N19 S7E 33
S7E N20 N8 N 0 1 Y N N N N N 2.527 0.196 12.198 6.159 -4.422 -0.207 N20 S7E 34
S7E N22 N9 N 0 1 N N N N N N -0.494 2.152 11.845 9.505 -5.665 -0.029 N22 S7E 35
S7E N23 N10 N 0 1 N N N N N N -2.930 -2.660 31.823 -9.158 -4.711 1.032 N23 S7E 36
S7E N28 N11 N 0 1 Y N N N N N -0.461 1.321 27.396 -4.819 0.781 -0.096 N28 S7E 37
S7E N33 N12 N 0 1 Y N N N N N 3.000 1.920 23.415 0.129 2.489 -0.059 N33 S7E 38
S7E O4 O1 O 0 1 N N N N N N -0.838 -1.125 31.258 -7.968 -6.974 0.450 O4 S7E 39
S7E O5 O2 O 0 1 N N N N N N -2.207 1.518 30.474 -8.347 0.351 -0.087 O5 S7E 40
S7E O6 O3 O 0 1 N N N N N N 3.191 2.888 26.798 -2.929 4.299 -0.007 O6 S7E 41
S7E O7 O4 O 0 1 N N N N N N 6.163 1.699 20.819 3.776 4.124 -0.105 O7 S7E 42
S7E O8 O5 O 0 1 N N N N N N 4.554 0.174 14.288 5.031 -1.777 0.072 O8 S7E 43
S7E H1 H1 H 0 1 N N N N N N 2.754 1.757 18.569 4.295 0.059 -0.053 H1 S7E 44
S7E H2 H2 H 0 1 N N N N N N 1.091 2.284 14.249 8.986 -2.840 0.247 H2 S7E 45
S7E H3 H3 H 0 1 N N N N N N -0.536 -1.942 29.501 -7.205 -6.354 -1.271 H3 S7E 46
S7E H4 H4 H 0 1 N N N N N N 1.496 3.831 28.042 -4.849 4.008 -0.005 H4 S7E 47
S7E H5 H5 H 0 1 N N N N N N -1.114 3.132 30.796 -7.910 3.281 -1.037 H5 S7E 48
S7E H6 H6 H 0 1 N N N N N N 0.642 3.510 30.780 -8.328 2.456 0.484 H6 S7E 49
S7E H7 H7 H 0 1 N N N N N N -0.521 4.608 29.962 -7.476 4.018 0.523 H7 S7E 50
S7E H8 H8 H 0 1 N N N N N N 6.154 2.381 22.852 2.074 5.064 0.006 H8 S7E 51
S7E H9 H9 H 0 1 N N N N N N 5.159 2.922 26.530 -0.810 6.355 -0.986 H9 S7E 52
S7E H10 H10 H 0 1 N N N N N N 6.496 2.066 25.690 -1.623 5.956 0.547 H10 S7E 53
S7E H11 H11 H 0 1 N N N N N N 6.186 3.802 25.348 0.005 6.674 0.564 H11 S7E 54
S7E H12 H12 H 0 1 N N N N N N 5.990 0.723 15.913 8.216 1.746 0.338 H12 S7E 55
S7E H13 H13 H 0 1 N N N N N N 7.404 0.981 19.471 6.671 4.489 -0.770 H13 S7E 56
S7E H14 H14 H 0 1 N N N N N N 7.567 -0.187 18.116 5.801 4.627 0.777 H14 S7E 57
S7E H15 H15 H 0 1 N N N N N N 7.913 1.556 17.848 7.535 4.224 0.764 H15 S7E 58
S7E H16 H16 H 0 1 N N N N N N 1.231 0.213 10.491 6.820 -6.486 -0.377 H16 S7E 59
S7E H17 H17 H 0 1 N N N N N N 4.291 -0.873 12.554 4.242 -4.615 0.622 H17 S7E 60
S7E H18 H18 H 0 1 N N N N N N 3.057 -1.727 11.566 4.318 -3.693 -0.898 H18 S7E 61
S7E H19 H19 H 0 1 N N N N N N 4.014 -0.387 10.847 4.486 -5.464 -0.923 H19 S7E 62
S7E H20 H20 H 0 1 N N N N N N -2.273 -3.633 30.114 -9.083 -4.562 -1.062 H20 S7E 63
S7E H21 H21 H 0 1 N N N N N N -4.520 -2.534 29.774 -6.677 -3.853 0.675 H21 S7E 64
S7E H22 H22 H 0 1 N N N N N N -3.296 -2.328 28.476 -6.688 -3.804 -1.104 H22 S7E 65
S7E H23 H23 H 0 1 N N N N N N -3.694 -0.192 30.599 -8.548 -2.165 -1.047 H23 S7E 66
S7E H24 H24 H 0 1 N N N N N N -4.753 -0.281 29.151 -8.537 -2.215 0.733 H24 S7E 67
S7E H25 H25 H 0 1 N N N N N N -2.526 -0.234 27.830 -5.934 -1.575 -0.156 H25 S7E 68
S7E H26 H26 H 0 1 N N N N N N 0.878 1.585 24.994 -2.191 1.300 -0.087 H26 S7E 69
S7E H27 H27 H 0 1 N N N N N N 2.997 1.533 20.737 2.530 1.298 -0.088 H27 S7E 70
S7E H28 H28 H 0 1 N N N N N N 2.241 1.683 15.875 7.994 -0.925 0.261 H28 S7E 71
S7E H29 H29 H 0 1 N N N N N N -0.788 2.752 12.589 10.350 -5.207 0.104 H29 S7E 72
S7E H30 H30 H 0 1 N N N N N N -0.336 2.696 11.021 9.488 -6.628 -0.142 H30 S7E 73
S7E H31 H31 H 0 1 N N N N N N -2.195 -3.023 32.396 -8.554 -4.893 1.819 H31 S7E 74
S7E H32 H32 H 0 1 N N N N N N -3.171 -1.740 32.133 -9.631 -3.826 1.136 H32 S7E 75
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S7E C46 N20 SING Y N 1
S7E C46 C45 DOUB Y N 2
S7E C47 N20 SING N N 3
S7E N22 C45 SING N N 4
S7E N20 C44 SING Y N 5
S7E C45 C21 SING Y N 6
S7E C44 C21 DOUB Y N 7
S7E C44 C43 SING N N 8
S7E O8 C43 DOUB N N 9
S7E C43 N19 SING N N 10
S7E N19 C39 SING N N 11
S7E C40 C39 DOUB Y N 12
S7E C40 N17 SING Y N 13
S7E C39 C18 SING Y N 14
S7E N17 C41 SING N N 15
S7E N17 C42 SING Y N 16
S7E C18 C42 DOUB Y N 17
S7E C42 C38 SING N N 18
S7E C38 O7 DOUB N N 19
S7E C38 N16 SING N N 20
S7E N16 C34 SING N N 21
S7E C34 C35 DOUB Y N 22
S7E C34 N33 SING Y N 23
S7E C35 N15 SING Y N 24
S7E N33 C37 DOUB Y N 25
S7E N15 C37 SING Y N 26
S7E N15 C36 SING N N 27
S7E C37 C32 SING N N 28
S7E N14 C32 SING N N 29
S7E N14 C27 SING N N 30
S7E C32 O6 DOUB N N 31
S7E C27 N28 SING Y N 32
S7E C27 C29 DOUB Y N 33
S7E N28 C31 DOUB Y N 34
S7E C29 N13 SING Y N 35
S7E C31 N13 SING Y N 36
S7E C31 C26 SING N N 37
S7E N12 C26 SING N N 38
S7E N12 C51 SING N N 39
S7E N13 C30 SING N N 40
S7E C26 O5 DOUB N N 41
S7E C50 C51 SING N N 42
S7E C50 C49 SING N N 43
S7E C22 C49 SING N N 44
S7E C22 O4 DOUB N N 45
S7E C49 N23 SING N N 46
S7E C18 H1 SING N N 47
S7E C21 H2 SING N N 48
S7E C22 H3 SING N N 49
S7E C29 H4 SING N N 50
S7E C30 H5 SING N N 51
S7E C30 H6 SING N N 52
S7E C30 H7 SING N N 53
S7E C35 H8 SING N N 54
S7E C36 H9 SING N N 55
S7E C36 H10 SING N N 56
S7E C36 H11 SING N N 57
S7E C40 H12 SING N N 58
S7E C41 H13 SING N N 59
S7E C41 H14 SING N N 60
S7E C41 H15 SING N N 61
S7E C46 H16 SING N N 62
S7E C47 H17 SING N N 63
S7E C47 H18 SING N N 64
S7E C47 H19 SING N N 65
S7E C49 H20 SING N N 66
S7E C50 H21 SING N N 67
S7E C50 H22 SING N N 68
S7E C51 H23 SING N N 69
S7E C51 H24 SING N N 70
S7E N12 H25 SING N N 71
S7E N14 H26 SING N N 72
S7E N16 H27 SING N N 73
S7E N19 H28 SING N N 74
S7E N22 H29 SING N N 75
S7E N22 H30 SING N N 76
S7E N23 H31 SING N N 77
S7E N23 H32 SING N N 78
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S7E InChI InChI 1.03 InChI=1S/C26H32N12O5/c1-35-9-15(28)7-17(35)23(40)30-16-8-18(36(2)10-16)24(41)33-19-11-38(4)22(32-19)26(43)34-20-12-37(3)21(31-20)25(42)29-6-5-14(27)13-39/h7-14H,5-6,27-28H2,1-4H3,(H,29,42)(H,30,40)(H,33,41)(H,34,43)/t14-/m0/s1
S7E InChIKey InChI 1.03 UZFBAFZKKPMVCV-AWEZNQCLSA-N
S7E SMILES_CANONICAL CACTVS 3.385 Cn1cc(N)cc1C(=O)Nc2cn(C)c(c2)C(=O)Nc3cn(C)c(n3)C(=O)Nc4cn(C)c(n4)C(=O)NCC[C@H](N)C=O
S7E SMILES CACTVS 3.385 Cn1cc(N)cc1C(=O)Nc2cn(C)c(c2)C(=O)Nc3cn(C)c(n3)C(=O)Nc4cn(C)c(n4)C(=O)NCC[CH](N)C=O
S7E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cn1cc(cc1C(=O)Nc2cc(n(c2)C)C(=O)Nc3cn(c(n3)C(=O)Nc4cn(c(n4)C(=O)NCC[C@@H](C=O)N)C)C)N
S7E SMILES "OpenEye OEToolkits" 2.0.7 Cn1cc(cc1C(=O)Nc2cc(n(c2)C)C(=O)Nc3cn(c(n3)C(=O)Nc4cn(c(n4)C(=O)NCCC(C=O)N)C)C)N
#
_pdbx_chem_comp_identifier.comp_id S7E
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
4-[[4-[(4-azanyl-1-methyl-pyrrol-2-yl)carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]-~{N}-[2-[[(3~{S})-3-azanyl-4-oxidanylidene-butyl]carbamoyl]-1-methyl-imidazol-4-yl]-1-methyl-imidazole-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S7E 'Create component' 2020-03-18 PDBJ
S7E 'Initial release' 2020-06-24 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
S7E C18 C 10.399 1.824 1
S7E C21 C 6.307 7.071 2
S7E C22 C 28.067 -7.921 3
S7E C26 C 23.930 -4.437 4
S7E C27 C 21.085 -1.797 5
S7E C29 C 22.299 -0.915 6
S7E C30 C 24.939 -1.333 7
S7E C31 C 23.049 -3.223 8
S7E C32 C 18.544 -2.337 9
S7E C34 C 15.154 -0.447 10
S7E C35 C 14.690 -1.873 11
S7E C36 C 15.904 -4.255 12
S7E C37 C 17.117 -1.873 13
S7E C38 C 12.780 0.610 14
S7E C39 C 9.935 3.250 15
S7E C40 C 11.149 4.132 16
S7E C41 C 13.789 3.714 17
S7E C42 C 11.899 1.824 18
S7E C43 C 8.197 5.181 19
S7E C44 C 6.770 5.644 20
S7E C45 C 4.807 7.071 21
S7E C46 C 4.343 5.644 22
S7E C47 C 5.557 3.263 23
S7E C49 C 28.677 -6.550 24
S7E C50 C 27.796 -5.337 25
S7E C51 C 26.304 -5.494 26
S7E N12 N 25.422 -4.280 27
S7E N13 N 23.512 -1.797 28
S7E N14 N 19.659 -1.333 29
S7E N15 N 15.904 -2.755 30
S7E N16 N 14.272 0.767 31
S7E N17 N 12.362 3.250 32
S7E N19 N 8.509 3.714 33
S7E N20 N 5.557 4.763 34
S7E N22 N 3.925 8.284 35
S7E N23 N 30.169 -6.393 36
S7E N28 N 21.549 -3.223 37
S7E N33 N 16.654 -0.447 38
S7E O4 O 28.949 -9.134 39
S7E O5 O 23.320 -5.807 40
S7E O6 O 18.856 -3.804 41
S7E O7 O 12.170 -0.760 42
S7E O8 O 9.311 6.184 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
S7E C46 N20 SINGLE NONE 1
S7E C46 C45 DOUBLE NONE 2
S7E C47 N20 SINGLE NONE 3
S7E N22 C45 SINGLE NONE 4
S7E N20 C44 SINGLE NONE 5
S7E C45 C21 SINGLE NONE 6
S7E C44 C21 DOUBLE NONE 7
S7E C44 C43 SINGLE NONE 8
S7E O8 C43 DOUBLE NONE 9
S7E C43 N19 SINGLE NONE 10
S7E N19 C39 SINGLE NONE 11
S7E C40 C39 DOUBLE NONE 12
S7E C40 N17 SINGLE NONE 13
S7E C39 C18 SINGLE NONE 14
S7E N17 C41 SINGLE NONE 15
S7E N17 C42 SINGLE NONE 16
S7E C18 C42 DOUBLE NONE 17
S7E C42 C38 SINGLE NONE 18
S7E C38 O7 DOUBLE NONE 19
S7E C38 N16 SINGLE NONE 20
S7E N16 C34 SINGLE NONE 21
S7E C34 C35 DOUBLE NONE 22
S7E C34 N33 SINGLE NONE 23
S7E C35 N15 SINGLE NONE 24
S7E N33 C37 DOUBLE NONE 25
S7E N15 C37 SINGLE NONE 26
S7E N15 C36 SINGLE NONE 27
S7E C37 C32 SINGLE NONE 28
S7E N14 C32 SINGLE NONE 29
S7E N14 C27 SINGLE NONE 30
S7E C32 O6 DOUBLE NONE 31
S7E C27 N28 SINGLE NONE 32
S7E C27 C29 DOUBLE NONE 33
S7E N28 C31 DOUBLE NONE 34
S7E C29 N13 SINGLE NONE 35
S7E C31 N13 SINGLE NONE 36
S7E C31 C26 SINGLE NONE 37
S7E N12 C26 SINGLE NONE 38
S7E N12 C51 SINGLE NONE 39
S7E N13 C30 SINGLE NONE 40
S7E C26 O5 DOUBLE NONE 41
S7E C50 C51 SINGLE NONE 42
S7E C50 C49 SINGLE NONE 43
S7E C22 C49 SINGLE NONE 44
S7E C22 O4 DOUBLE NONE 45
S7E C49 N23 SINGLE BEGINDASH 46
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
S7E MurckoScaffold S1 scaffold 'O=C(Nc1c[nH]c(C(=O)Nc2c[nH]c(C(=O)Nc3c[nH]cn3)n2)c1)c1ccc[nH]1' InChI=1S/C17H15N9O3/c27-15(10-2-1-3-19-10)23-9-4-11(20-5-9)16(28)26-13-7-21-14(24-13)17(29)25-12-6-18-8-22-12/h1-8,19-20H,(H,18,22)(H,21,24)(H,23,27)(H,25,29)(H,26,28) HRUGWEMGUJNFBC-UHFFFAOYSA-N
S7E amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
S7E imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
S7E peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
S7E pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
S7E C18 S1 1
S7E C21 S1 1
S7E C27 S1 1
S7E C29 S1 1
S7E C31 S1 1
S7E C32 S1 1
S7E C34 S1 1
S7E C35 S1 1
S7E C37 S1 1
S7E C38 S1 1
S7E C39 S1 1
S7E C40 S1 1
S7E C42 S1 1
S7E C43 S1 1
S7E C44 S1 1
S7E C45 S1 1
S7E C46 S1 1
S7E N13 S1 1
S7E N14 S1 1
S7E N15 S1 1
S7E N16 S1 1
S7E N17 S1 1
S7E N19 S1 1
S7E N20 S1 1
S7E N28 S1 1
S7E N33 S1 1
S7E O6 S1 1
S7E O7 S1 1
S7E O8 S1 1
S7E N12 F1 1
S7E C26 F1 1
S7E O5 F1 1
S7E C31 F1 1
S7E N14 F1 2
S7E C32 F1 2
S7E O6 F1 2
S7E C37 F1 2
S7E N16 F1 3
S7E C38 F1 3
S7E O7 F1 3
S7E C42 F1 3
S7E N19 F1 4
S7E C43 F1 4
S7E O8 F1 4
S7E C44 F1 4
S7E C27 F2 1
S7E C29 F2 1
S7E N13 F2 1
S7E C31 F2 1
S7E N28 F2 1
S7E C34 F2 2
S7E C35 F2 2
S7E N15 F2 2
S7E C37 F2 2
S7E N33 F2 2
S7E O4 F3 1
S7E C22 F3 1
S7E C49 F3 1
S7E N23 F3 1
S7E C40 F4 1
S7E C39 F4 1
S7E C18 F4 1
S7E C42 F4 1
S7E N17 F4 1
S7E C44 F4 2
S7E C21 F4 2
S7E C45 F4 2
S7E C46 F4 2
S7E N20 F4 2
#
_pdbe_chem_comp_rdkit_properties.comp_id S7E
_pdbe_chem_comp_rdkit_properties.exactmw 592.262
_pdbe_chem_comp_rdkit_properties.amw 592.621
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 17
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 13
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 75
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 17
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.269
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 290.208
_pdbe_chem_comp_rdkit_properties.tpsa 231.010
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.925
_pdbe_chem_comp_rdkit_properties.CrippenMR 152.144
_pdbe_chem_comp_rdkit_properties.chi0v 20.408
_pdbe_chem_comp_rdkit_properties.chi1v 10.584
_pdbe_chem_comp_rdkit_properties.chi2v 4.471
_pdbe_chem_comp_rdkit_properties.chi3v 4.471
_pdbe_chem_comp_rdkit_properties.chi4v 2.767
_pdbe_chem_comp_rdkit_properties.chi0n 52.408
_pdbe_chem_comp_rdkit_properties.chi1n 26.162
_pdbe_chem_comp_rdkit_properties.chi2n 4.471
_pdbe_chem_comp_rdkit_properties.chi3n 4.471
_pdbe_chem_comp_rdkit_properties.chi4n 2.767
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.710
_pdbe_chem_comp_rdkit_properties.kappa1 9.397
_pdbe_chem_comp_rdkit_properties.kappa2 12.434
_pdbe_chem_comp_rdkit_properties.kappa3 6.962
_pdbe_chem_comp_rdkit_properties.Phi 2.717
#
_pdbe_chem_comp_external_mappings.comp_id S7E
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 146171216
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
S7E C18 4.255 -1.157 1.677 ETKDGv3 1
S7E C21 8.391 -3.013 4.623 ETKDGv3 2
S7E C22 -10.259 1.251 0.115 ETKDGv3 3
S7E C26 -7.247 1.969 -2.270 ETKDGv3 4
S7E C27 -3.971 3.447 -2.266 ETKDGv3 5
S7E C29 -4.652 4.556 -2.492 ETKDGv3 6
S7E C30 -7.128 5.163 -2.393 ETKDGv3 7
S7E C31 -6.035 2.811 -2.334 ETKDGv3 8
S7E C32 -1.844 2.179 -1.785 ETKDGv3 9
S7E C34 1.682 1.576 -1.579 ETKDGv3 10
S7E C35 1.715 2.411 -2.601 ETKDGv3 11
S7E C36 -0.046 3.147 -4.251 ETKDGv3 12
S7E C37 -0.380 2.103 -1.924 ETKDGv3 13
S7E C38 2.767 0.039 0.101 ETKDGv3 14
S7E C39 5.431 -2.011 1.572 ETKDGv3 15
S7E C40 5.731 -2.151 0.287 ETKDGv3 16
S7E C41 4.445 -1.846 -1.867 ETKDGv3 17
S7E C42 3.905 -0.837 0.436 ETKDGv3 18
S7E C43 7.069 -3.653 2.606 ETKDGv3 19
S7E C44 8.066 -3.890 3.675 ETKDGv3 20
S7E C45 9.449 -3.631 5.417 ETKDGv3 21
S7E C46 9.714 -4.829 4.924 ETKDGv3 22
S7E C47 8.973 -6.199 2.891 ETKDGv3 23
S7E C49 -8.929 0.674 0.537 ETKDGv3 24
S7E C50 -8.563 -0.581 -0.282 ETKDGv3 25
S7E C51 -8.312 -0.290 -1.770 ETKDGv3 26
S7E N12 -7.143 0.573 -1.944 ETKDGv3 27
S7E N13 -6.029 4.223 -2.579 ETKDGv3 28
S7E N14 -2.546 3.384 -2.122 ETKDGv3 29
S7E N15 0.388 2.828 -2.895 ETKDGv3 30
S7E N16 2.828 0.905 -1.041 ETKDGv3 31
S7E N17 4.800 -1.427 -0.515 ETKDGv3 32
S7E N19 6.158 -2.543 2.689 ETKDGv3 33
S7E N20 8.855 -5.078 3.817 ETKDGv3 34
S7E N22 10.121 -3.028 6.522 ETKDGv3 35
S7E N23 -8.952 0.332 1.961 ETKDGv3 36
S7E N28 -4.845 2.325 -2.162 ETKDGv3 37
S7E N33 0.343 1.364 -1.143 ETKDGv3 38
S7E O4 -10.619 2.337 0.541 ETKDGv3 39
S7E O5 -8.375 2.479 -2.501 ETKDGv3 40
S7E O6 -2.466 1.191 -1.310 ETKDGv3 41
S7E O7 1.760 0.059 0.860 ETKDGv3 42
S7E O8 7.000 -4.451 1.635 ETKDGv3 43
S7E H1 3.765 -0.835 2.586 ETKDGv3 44
S7E H2 7.989 -2.018 4.755 ETKDGv3 45
S7E H3 -10.906 0.714 -0.572 ETKDGv3 46
S7E H4 -4.242 5.555 -2.576 ETKDGv3 47
S7E H5 -6.790 6.195 -2.624 ETKDGv3 48
S7E H6 -7.962 4.913 -3.080 ETKDGv3 49
S7E H7 -7.481 5.124 -1.341 ETKDGv3 50
S7E H8 2.594 2.686 -3.170 ETKDGv3 51
S7E H9 0.700 3.810 -4.738 ETKDGv3 52
S7E H10 -0.141 2.212 -4.843 ETKDGv3 53
S7E H11 -1.021 3.671 -4.243 ETKDGv3 54
S7E H12 6.556 -2.722 -0.117 ETKDGv3 55
S7E H13 3.767 -2.724 -1.818 ETKDGv3 56
S7E H14 5.361 -2.125 -2.428 ETKDGv3 57
S7E H15 3.939 -1.029 -2.416 ETKDGv3 58
S7E H16 10.471 -5.511 5.288 ETKDGv3 59
S7E H17 9.428 -5.852 1.940 ETKDGv3 60
S7E H18 9.614 -6.992 3.330 ETKDGv3 61
S7E H19 7.970 -6.630 2.693 ETKDGv3 62
S7E H20 -8.143 1.444 0.379 ETKDGv3 63
S7E H21 -9.378 -1.332 -0.195 ETKDGv3 64
S7E H22 -7.645 -1.040 0.147 ETKDGv3 65
S7E H23 -9.214 0.151 -2.243 ETKDGv3 66
S7E H24 -8.118 -1.253 -2.289 ETKDGv3 67
S7E H25 -6.206 0.166 -1.728 ETKDGv3 68
S7E H26 -1.998 4.266 -2.236 ETKDGv3 69
S7E H27 3.759 1.083 -1.483 ETKDGv3 70
S7E H28 5.952 -2.134 3.628 ETKDGv3 71
S7E H29 10.880 -3.538 7.026 ETKDGv3 72
S7E H30 9.856 -2.068 6.836 ETKDGv3 73
S7E H31 -9.769 -0.293 2.155 ETKDGv3 74
S7E H32 -9.089 1.208 2.517 ETKDGv3 75
#