data_S51
#
_chem_comp.id S51
_chem_comp.name 2-benzyl-1-phenyl-3-(piperazin-1-ylcarbonyl)-1H-indole
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H25 N3 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms (2-Benzyl-1-phenyl-1H-indol-3-yl)-piperazin-1-yl-methanone
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-09-03
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 395.496
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S51
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3OOT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S51 C1 C1 C 0 1 Y N N N N N -29.584 -51.492 -22.054 -5.003 -1.308 -1.673 C1 S51 1
S51 C2 C2 C 0 1 Y N N N N N -30.348 -51.283 -20.905 -4.825 -1.233 -0.303 C2 S51 2
S51 C3 C3 C 0 1 Y N N N N N -31.419 -52.142 -20.624 -3.553 -1.135 0.225 C3 S51 3
S51 C4 C4 C 0 1 Y N N N N N -31.795 -53.227 -21.445 -2.452 -1.112 -0.620 C4 S51 4
S51 C5 C5 C 0 1 Y N N N N N -30.996 -53.385 -22.598 -2.633 -1.188 -1.995 C5 S51 5
S51 C6 C6 C 0 1 Y N N N N N -29.909 -52.555 -22.897 -3.908 -1.285 -2.517 C6 S51 6
S51 N12 N12 N 0 1 Y N N N N N -32.837 -54.039 -21.134 -1.160 -1.012 -0.087 N12 S51 7
S51 C13 C13 C 0 1 Y N N N N N -34.117 -53.649 -21.290 -0.557 -1.970 0.704 C13 S51 8
S51 C14 C14 C 0 1 Y N N N N N -34.888 -54.769 -20.936 0.725 -1.499 1.031 C14 S51 9
S51 C15 C15 C 0 1 Y N N N N N -33.991 -55.756 -20.501 0.852 -0.183 0.378 C15 S51 10
S51 C16 C16 C 0 1 Y N N N N N -32.683 -55.327 -20.751 -0.322 0.038 -0.280 C16 S51 11
S51 C17 C17 C 0 1 Y N N N N N -34.749 -52.455 -21.667 -0.972 -3.207 1.184 C17 S51 12
S51 C18 C18 C 0 1 Y N N N N N -36.145 -52.393 -21.693 -0.127 -3.958 1.972 C18 S51 13
S51 C19 C19 C 0 1 Y N N N N N -36.909 -53.515 -21.342 1.139 -3.492 2.295 C19 S51 14
S51 C20 C20 C 0 1 Y N N N N N -36.289 -54.712 -20.962 1.568 -2.268 1.829 C20 S51 15
S51 C26 C26 C 0 1 Y N N N N N -31.326 -56.500 -19.027 -1.200 2.335 -0.195 C26 S51 16
S51 C29 C29 C 0 1 Y N N N N N -31.167 -57.858 -18.741 -0.370 3.322 0.303 C29 S51 17
S51 C30 C30 C 0 1 Y N N N N N -31.123 -58.279 -17.416 -0.884 4.308 1.124 C30 S51 18
S51 C31 C31 C 0 1 Y N N N N N -31.240 -57.329 -16.397 -2.228 4.307 1.447 C31 S51 19
S51 C32 C32 C 0 1 Y N N N N N -31.422 -55.971 -16.680 -3.059 3.321 0.948 C32 S51 20
S51 C33 C33 C 0 1 Y N N N N N -31.454 -55.550 -18.007 -2.544 2.334 0.128 C33 S51 21
S51 C39 C39 C 0 1 N N N N N N -34.463 -57.157 -20.158 2.016 0.711 0.423 C39 S51 22
S51 N40 N40 N 0 1 N N N N N N -35.202 -57.447 -19.063 3.006 0.576 -0.482 N40 S51 23
S51 O41 O41 O 0 1 N N N N N N -34.117 -58.062 -20.906 2.087 1.575 1.278 O41 S51 24
S51 C42 C42 C 0 1 N N N N N N -35.665 -56.431 -18.104 4.126 1.528 -0.524 C42 S51 25
S51 C43 C43 C 0 1 N N N N N N -35.142 -56.826 -16.729 5.438 0.736 -0.507 C43 S51 26
S51 N44 N44 N 0 1 N N N N N N -35.455 -58.207 -16.404 5.423 -0.253 -1.592 N44 S51 27
S51 C45 C45 C 0 1 N N N N N N -35.166 -59.240 -17.390 4.350 -1.238 -1.401 C45 S51 28
S51 C46 C46 C 0 1 N N N N N N -35.645 -58.830 -18.788 2.997 -0.531 -1.450 C46 S51 29
S51 C60 C60 C 0 1 N N N N N N -31.387 -56.067 -20.467 -0.641 1.264 -1.096 C60 S51 30
S51 H1 H1 H 0 1 N N N N N N -28.754 -50.841 -22.287 -5.998 -1.389 -2.083 H1 S51 31
S51 H2 H2 H 0 1 N N N N N N -30.116 -50.466 -20.238 -5.682 -1.252 0.354 H2 S51 32
S51 H3 H3 H 0 1 N N N N N N -31.991 -51.963 -19.726 -3.415 -1.076 1.295 H3 S51 33
S51 H5 H5 H 0 1 N N N N N N -31.235 -54.185 -23.283 -1.778 -1.169 -2.655 H5 S51 34
S51 H6 H6 H 0 1 N N N N N N -29.320 -52.738 -23.783 -4.050 -1.344 -3.586 H6 S51 35
S51 H17 H17 H 0 1 N N N N N N -34.161 -51.590 -21.935 -1.956 -3.580 0.939 H17 S51 36
S51 H18 H18 H 0 1 N N N N N N -36.637 -51.477 -21.985 -0.454 -4.919 2.342 H18 S51 37
S51 H19 H19 H 0 1 N N N N N N -37.987 -53.456 -21.365 1.791 -4.091 2.913 H19 S51 38
S51 H20 H20 H 0 1 N N N N N N -36.879 -55.576 -20.694 2.555 -1.908 2.082 H20 S51 39
S51 H29 H29 H 0 1 N N N N N N -31.079 -58.576 -19.543 0.680 3.322 0.051 H29 S51 40
S51 H30 H30 H 0 1 N N N N N N -31.000 -59.325 -17.178 -0.236 5.078 1.514 H30 S51 41
S51 H31 H31 H 0 1 N N N N N N -31.189 -57.651 -15.367 -2.630 5.077 2.089 H31 S51 42
S51 H32 H32 H 0 1 N N N N N N -31.536 -55.257 -15.878 -4.109 3.320 1.201 H32 S51 43
S51 H33 H33 H 0 1 N N N N N N -31.576 -54.504 -18.246 -3.193 1.563 -0.262 H33 S51 44
S51 H42 H42 H 0 1 N N N N N N -35.278 -55.441 -18.386 4.068 2.122 -1.436 H42 S51 45
S51 H42A H42A H 0 0 N N N N N N -36.764 -56.393 -18.094 4.082 2.183 0.346 H42A S51 46
S51 H43 H43 H 0 1 N N N N N N -34.049 -56.702 -16.719 6.276 1.419 -0.649 H43 S51 47
S51 H43A H43A H 0 0 N N N N N N -35.607 -56.173 -15.975 5.542 0.225 0.450 H43A S51 48
S51 HN44 HN44 H 0 0 N N N N N N -34.922 -58.435 -15.589 5.344 0.197 -2.492 HN44 S51 49
S51 H45 H45 H 0 1 N N N N N N -34.079 -59.406 -17.422 4.399 -1.988 -2.190 H45 S51 50
S51 H45A H45A H 0 0 N N N N N N -35.682 -60.166 -17.096 4.470 -1.722 -0.431 H45A S51 51
S51 H46 H46 H 0 1 N N N N N N -36.743 -58.882 -18.832 2.207 -1.237 -1.192 H46 S51 52
S51 H46A H46A H 0 0 N N N N N N -35.218 -59.511 -19.539 2.828 -0.139 -2.453 H46A S51 53
S51 H60 H60 H 0 1 N N N N N N -31.332 -56.956 -21.112 0.268 1.629 -1.574 H60 S51 54
S51 H60A H60A H 0 0 N N N N N N -30.539 -55.399 -20.678 -1.376 1.011 -1.860 H60A S51 55
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S51 C1 C2 DOUB Y N 1
S51 C1 C6 SING Y N 2
S51 C2 C3 SING Y N 3
S51 C3 C4 DOUB Y N 4
S51 C4 C5 SING Y N 5
S51 C4 N12 SING Y N 6
S51 C5 C6 DOUB Y N 7
S51 N12 C13 SING Y N 8
S51 N12 C16 SING Y N 9
S51 C13 C14 DOUB Y N 10
S51 C13 C17 SING Y N 11
S51 C14 C15 SING Y N 12
S51 C14 C20 SING Y N 13
S51 C15 C16 DOUB Y N 14
S51 C15 C39 SING N N 15
S51 C16 C60 SING N N 16
S51 C17 C18 DOUB Y N 17
S51 C18 C19 SING Y N 18
S51 C19 C20 DOUB Y N 19
S51 C26 C29 DOUB Y N 20
S51 C26 C33 SING Y N 21
S51 C26 C60 SING N N 22
S51 C29 C30 SING Y N 23
S51 C30 C31 DOUB Y N 24
S51 C31 C32 SING Y N 25
S51 C32 C33 DOUB Y N 26
S51 C39 N40 SING N N 27
S51 C39 O41 DOUB N N 28
S51 N40 C42 SING N N 29
S51 N40 C46 SING N N 30
S51 C42 C43 SING N N 31
S51 C43 N44 SING N N 32
S51 N44 C45 SING N N 33
S51 C45 C46 SING N N 34
S51 C1 H1 SING N N 35
S51 C2 H2 SING N N 36
S51 C3 H3 SING N N 37
S51 C5 H5 SING N N 38
S51 C6 H6 SING N N 39
S51 C17 H17 SING N N 40
S51 C18 H18 SING N N 41
S51 C19 H19 SING N N 42
S51 C20 H20 SING N N 43
S51 C29 H29 SING N N 44
S51 C30 H30 SING N N 45
S51 C31 H31 SING N N 46
S51 C32 H32 SING N N 47
S51 C33 H33 SING N N 48
S51 C42 H42 SING N N 49
S51 C42 H42A SING N N 50
S51 C43 H43 SING N N 51
S51 C43 H43A SING N N 52
S51 N44 HN44 SING N N 53
S51 C45 H45 SING N N 54
S51 C45 H45A SING N N 55
S51 C46 H46 SING N N 56
S51 C46 H46A SING N N 57
S51 C60 H60 SING N N 58
S51 C60 H60A SING N N 59
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S51 SMILES ACDLabs 12.01 O=C(c3c1ccccc1n(c2ccccc2)c3Cc4ccccc4)N5CCNCC5
S51 SMILES_CANONICAL CACTVS 3.370 O=C(N1CCNCC1)c2c(Cc3ccccc3)n(c4ccccc4)c5ccccc25
S51 SMILES CACTVS 3.370 O=C(N1CCNCC1)c2c(Cc3ccccc3)n(c4ccccc4)c5ccccc25
S51 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 c1ccc(cc1)Cc2c(c3ccccc3n2c4ccccc4)C(=O)N5CCNCC5
S51 SMILES "OpenEye OEToolkits" 1.7.0 c1ccc(cc1)Cc2c(c3ccccc3n2c4ccccc4)C(=O)N5CCNCC5
S51 InChI InChI 1.03 InChI=1S/C26H25N3O/c30-26(28-17-15-27-16-18-28)25-22-13-7-8-14-23(22)29(21-11-5-2-6-12-21)24(25)19-20-9-3-1-4-10-20/h1-14,27H,15-19H2
S51 InChIKey InChI 1.03 FYDPGAJRQXSCCK-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S51 "SYSTEMATIC NAME" ACDLabs 12.01 (2-benzyl-1-phenyl-1H-indol-3-yl)(piperazin-1-yl)methanone
S51 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[1-phenyl-2-(phenylmethyl)indol-3-yl]-piperazin-1-yl-methanone"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S51 'Create component' 2010-09-03 RCSB
S51 'Modify aromatic_flag' 2011-06-04 RCSB
S51 'Modify descriptor' 2011-06-04 RCSB
S51 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id S51
_pdbx_chem_comp_synonyms.name (2-Benzyl-1-phenyl-1H-indol-3-yl)-piperazin-1-yl-methanone
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id S51
_pdbe_chem_comp_synonyms.name (2-Benzyl-1-phenyl-1H-indol-3-yl)-piperazin-1-yl-methanone
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
S51 C1 C 6.868 -5.191 1
S51 C2 C 5.595 -4.398 2
S51 C3 C 5.644 -2.899 3
S51 C4 C 6.968 -2.193 4
S51 C5 C 8.241 -2.985 5
S51 C6 C 8.191 -4.484 6
S51 N12 N 7.018 -0.694 7
S51 C13 C 5.598 -0.236 8
S51 C14 C 5.598 1.264 9
S51 C15 C 7.018 1.721 10
S51 C16 C 7.893 0.514 11
S51 C17 C 4.299 -0.986 12
S51 C18 C 3.000 -0.236 13
S51 C19 C 3.000 1.264 14
S51 C20 C 4.299 2.014 15
S51 C26 C 10.542 -0.451 16
S51 C29 C 10.282 -1.928 17
S51 C30 C 11.431 -2.892 18
S51 C31 C 12.840 -2.379 19
S51 C32 C 13.101 -0.902 20
S51 C33 C 11.951 0.062 21
S51 C39 C 7.483 3.147 22
S51 N40 N 8.951 3.456 23
S51 O41 O 6.482 4.263 24
S51 C42 C 9.953 2.339 25
S51 C43 C 11.421 2.649 26
S51 N44 N 11.887 4.074 27
S51 C45 C 10.885 5.191 28
S51 C46 C 9.417 4.882 29
S51 C60 C 9.393 0.514 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
S51 C1 C2 DOUBLE NONE 1
S51 C1 C6 SINGLE NONE 2
S51 C2 C3 SINGLE NONE 3
S51 C3 C4 DOUBLE NONE 4
S51 C4 C5 SINGLE NONE 5
S51 C4 N12 SINGLE NONE 6
S51 C5 C6 DOUBLE NONE 7
S51 N12 C13 SINGLE NONE 8
S51 N12 C16 SINGLE NONE 9
S51 C13 C14 SINGLE NONE 10
S51 C13 C17 DOUBLE NONE 11
S51 C14 C15 SINGLE NONE 12
S51 C14 C20 DOUBLE NONE 13
S51 C15 C16 DOUBLE NONE 14
S51 C15 C39 SINGLE NONE 15
S51 C16 C60 SINGLE NONE 16
S51 C17 C18 SINGLE NONE 17
S51 C18 C19 DOUBLE NONE 18
S51 C19 C20 SINGLE NONE 19
S51 C26 C29 DOUBLE NONE 20
S51 C26 C33 SINGLE NONE 21
S51 C26 C60 SINGLE NONE 22
S51 C29 C30 SINGLE NONE 23
S51 C30 C31 DOUBLE NONE 24
S51 C31 C32 SINGLE NONE 25
S51 C32 C33 DOUBLE NONE 26
S51 C39 N40 SINGLE NONE 27
S51 C39 O41 DOUBLE NONE 28
S51 N40 C42 SINGLE NONE 29
S51 N40 C46 SINGLE NONE 30
S51 C42 C43 SINGLE NONE 31
S51 C43 N44 SINGLE NONE 32
S51 N44 C45 SINGLE NONE 33
S51 C45 C46 SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
S51 MurckoScaffold S1 scaffold O=C(c1c(Cc2ccccc2)n(-c2ccccc2)c2ccccc12)N1CCNCC1 InChI=1S/C26H25N3O/c30-26(28-17-15-27-16-18-28)25-22-13-7-8-14-23(22)29(21-11-5-2-6-12-21)24(25)19-20-9-3-1-4-10-20/h1-14,27H,15-19H2 FYDPGAJRQXSCCK-UHFFFAOYSA-N
S51 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
S51 indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
S51 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
S51 piperazine F4 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
S51 pyrrole F5 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
S51 C1 S1 1
S51 C2 S1 1
S51 C3 S1 1
S51 C4 S1 1
S51 C5 S1 1
S51 C6 S1 1
S51 N12 S1 1
S51 C13 S1 1
S51 C14 S1 1
S51 C15 S1 1
S51 C16 S1 1
S51 C17 S1 1
S51 C18 S1 1
S51 C19 S1 1
S51 C20 S1 1
S51 C26 S1 1
S51 C29 S1 1
S51 C30 S1 1
S51 C31 S1 1
S51 C32 S1 1
S51 C33 S1 1
S51 C39 S1 1
S51 N40 S1 1
S51 O41 S1 1
S51 C42 S1 1
S51 C43 S1 1
S51 N44 S1 1
S51 C45 S1 1
S51 C46 S1 1
S51 C60 S1 1
S51 N40 F1 1
S51 C39 F1 1
S51 O41 F1 1
S51 C15 F1 1
S51 C13 F2 1
S51 C14 F2 1
S51 C15 F2 1
S51 C16 F2 1
S51 N12 F2 1
S51 C20 F2 1
S51 C19 F2 1
S51 C18 F2 1
S51 C17 F2 1
S51 C1 F3 1
S51 C2 F3 1
S51 C3 F3 1
S51 C4 F3 1
S51 C5 F3 1
S51 C6 F3 1
S51 C13 F3 2
S51 C14 F3 2
S51 C20 F3 2
S51 C19 F3 2
S51 C18 F3 2
S51 C17 F3 2
S51 C26 F3 3
S51 C29 F3 3
S51 C30 F3 3
S51 C31 F3 3
S51 C32 F3 3
S51 C33 F3 3
S51 N40 F4 1
S51 C42 F4 1
S51 C43 F4 1
S51 N44 F4 1
S51 C45 F4 1
S51 C46 F4 1
S51 C13 F5 1
S51 C14 F5 1
S51 C15 F5 1
S51 C16 F5 1
S51 N12 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id S51
_pdbe_chem_comp_rdkit_properties.exactmw 395.200
_pdbe_chem_comp_rdkit_properties.amw 395.506
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 30
_pdbe_chem_comp_rdkit_properties.NumAtoms 55
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.192
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 211.484
_pdbe_chem_comp_rdkit_properties.tpsa 37.270
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.484
_pdbe_chem_comp_rdkit_properties.CrippenMR 117.631
_pdbe_chem_comp_rdkit_properties.chi0v 14.750
_pdbe_chem_comp_rdkit_properties.chi1v 8.243
_pdbe_chem_comp_rdkit_properties.chi2v 3.908
_pdbe_chem_comp_rdkit_properties.chi3v 3.908
_pdbe_chem_comp_rdkit_properties.chi4v 2.752
_pdbe_chem_comp_rdkit_properties.chi0n 39.750
_pdbe_chem_comp_rdkit_properties.chi1n 20.690
_pdbe_chem_comp_rdkit_properties.chi2n 3.908
_pdbe_chem_comp_rdkit_properties.chi3n 3.908
_pdbe_chem_comp_rdkit_properties.chi4n 2.752
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.370
_pdbe_chem_comp_rdkit_properties.kappa1 5.653
_pdbe_chem_comp_rdkit_properties.kappa2 8.168
_pdbe_chem_comp_rdkit_properties.kappa3 3.397
_pdbe_chem_comp_rdkit_properties.Phi 1.539
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
S51 UniChem ZINC ZINC000058660699
S51 UniChem PubChem 46912134
S51 UniChem BindingDb 50329046
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
S51 C1 -4.308 3.608 -1.795 ETKDGv3 1
S51 C2 -4.641 2.387 -1.359 ETKDGv3 2
S51 C3 -3.644 1.554 -0.655 ETKDGv3 3
S51 C4 -2.398 2.015 -0.455 ETKDGv3 4
S51 C5 -2.035 3.370 -0.938 ETKDGv3 5
S51 C6 -2.942 4.124 -1.573 ETKDGv3 6
S51 N12 -1.427 1.213 0.235 ETKDGv3 7
S51 C13 -0.569 1.683 1.269 ETKDGv3 8
S51 C14 0.576 0.820 1.378 ETKDGv3 9
S51 C15 0.411 -0.198 0.344 ETKDGv3 10
S51 C16 -0.749 0.054 -0.300 ETKDGv3 11
S51 C17 -0.753 2.720 2.093 ETKDGv3 12
S51 C18 0.281 2.967 3.134 ETKDGv3 13
S51 C19 1.352 2.151 3.240 ETKDGv3 14
S51 C20 1.512 0.997 2.316 ETKDGv3 15
S51 C26 -1.867 -2.068 -1.064 ETKDGv3 16
S51 C29 -2.673 -2.182 0.011 ETKDGv3 17
S51 C30 -3.272 -3.487 0.361 ETKDGv3 18
S51 C31 -3.035 -4.561 -0.401 ETKDGv3 19
S51 C32 -2.176 -4.443 -1.595 ETKDGv3 20
S51 C33 -1.627 -3.264 -1.913 ETKDGv3 21
S51 C39 1.377 -1.274 0.044 ETKDGv3 22
S51 N40 2.789 -1.004 0.007 ETKDGv3 23
S51 O41 0.959 -2.445 -0.161 ETKDGv3 24
S51 C42 3.740 -2.060 0.370 ETKDGv3 25
S51 C43 4.995 -1.475 1.056 ETKDGv3 26
S51 N44 5.307 -0.084 0.672 ETKDGv3 27
S51 C45 4.804 0.260 -0.662 ETKDGv3 28
S51 C46 3.273 0.200 -0.681 ETKDGv3 29
S51 C60 -1.269 -0.743 -1.474 ETKDGv3 30
S51 H1 -5.038 4.219 -2.310 ETKDGv3 31
S51 H2 -5.642 2.007 -1.519 ETKDGv3 32
S51 H3 -3.933 0.575 -0.300 ETKDGv3 33
S51 H5 -1.033 3.750 -0.784 ETKDGv3 34
S51 H6 -2.675 5.111 -1.928 ETKDGv3 35
S51 H17 -1.630 3.350 2.020 ETKDGv3 36
S51 H18 0.168 3.803 3.812 ETKDGv3 37
S51 H19 2.097 2.332 4.003 ETKDGv3 38
S51 H20 2.356 0.326 2.406 ETKDGv3 39
S51 H29 -2.886 -1.331 0.643 ETKDGv3 40
S51 H30 -3.905 -3.571 1.235 ETKDGv3 41
S51 H31 -3.475 -5.516 -0.146 ETKDGv3 42
S51 H32 -1.994 -5.311 -2.214 ETKDGv3 43
S51 H33 -1.001 -3.188 -2.794 ETKDGv3 44
S51 H42 4.041 -2.602 -0.553 ETKDGv3 45
S51 H42A 3.267 -2.797 1.056 ETKDGv3 46
S51 H43 4.858 -1.525 2.159 ETKDGv3 47
S51 H43A 5.869 -2.117 0.814 ETKDGv3 48
S51 HN44 4.871 0.566 1.369 ETKDGv3 49
S51 H45 5.226 -0.439 -1.418 ETKDGv3 50
S51 H45A 5.138 1.286 -0.930 ETKDGv3 51
S51 H46 2.880 1.106 -0.175 ETKDGv3 52
S51 H46A 2.914 0.203 -1.733 ETKDGv3 53
S51 H60 -0.429 -0.907 -2.184 ETKDGv3 54
S51 H60A -2.034 -0.167 -2.031 ETKDGv3 55
#