data_S10
#
_chem_comp.id S10
_chem_comp.name "DIETHYL PROPANE-1,3-DIYLBISCARBAMATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H18 N2 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-10-26
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 218.250
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S10
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2C5C
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S10 O15 O15 O 0 1 N N N N N N -35.216 56.246 20.944 3.781 -1.422 0.000 O15 S10 1
S10 C10 C10 C 0 1 N N N N N N -35.832 55.260 21.309 3.670 -0.212 0.000 C10 S10 2
S10 O11 O11 O 0 1 N N N N N N -36.222 55.134 22.694 4.769 0.566 0.000 O11 S10 3
S10 C12 C12 C 0 1 N N N N N N -36.819 56.242 23.319 6.088 -0.042 0.000 C12 S10 4
S10 C13 C13 C 0 1 N N N N N N -36.929 55.877 24.758 7.154 1.055 0.000 C13 S10 5
S10 N9 N9 N 0 1 N N N N N N -36.034 54.166 20.603 2.445 0.352 0.000 N9 S10 6
S10 C8 C8 C 0 1 N N N N N N -35.053 53.778 19.637 1.249 -0.494 0.000 C8 S10 7
S10 C7 C7 C 0 1 N N N N N N -33.919 53.103 20.435 0.000 0.390 0.000 C7 S10 8
S10 C6 C6 C 0 1 N N N N N N -33.699 51.644 19.993 -1.249 -0.494 0.000 C6 S10 9
S10 N5 N5 N 0 1 N N N N N N -34.404 50.596 20.740 -2.445 0.352 0.000 N5 S10 10
S10 C4 C4 C 0 1 N N N N N N -35.734 50.336 20.818 -3.670 -0.212 0.000 C4 S10 11
S10 O14 O14 O 0 1 N N N N N N -36.704 51.032 20.484 -3.781 -1.422 0.000 O14 S10 12
S10 O3 O3 O 0 1 N N N N N N -36.003 48.986 21.330 -4.769 0.566 0.000 O3 S10 13
S10 C2 C2 C 0 1 N N N N N N -36.544 47.902 20.537 -6.088 -0.042 0.000 C2 S10 14
S10 C1 C1 C 0 1 N N N N N N -36.017 46.584 21.081 -7.154 1.055 0.000 C1 S10 15
S10 H121 1H12 H 0 0 N N N N N N -37.802 56.473 22.883 6.203 -0.661 -0.890 H121 S10 16
S10 H122 2H12 H 0 0 N N N N N N -36.201 57.143 23.191 6.203 -0.661 0.890 H122 S10 17
S10 H131 1H13 H 0 0 N N N N N N -37.852 56.306 25.175 7.039 1.673 0.890 H131 S10 18
S10 H132 2H13 H 0 0 N N N N N N -36.060 56.273 25.304 8.144 0.599 0.000 H132 S10 19
S10 H133 3H13 H 0 0 N N N N N N -36.956 54.782 24.858 7.039 1.673 -0.890 H133 S10 20
S10 H9 H9 H 0 1 N N N N N N -36.858 53.617 20.740 2.356 1.318 0.000 H9 S10 21
S10 H8C1 1H8C H 0 0 N N N N N N -34.684 54.644 19.068 1.249 -1.123 -0.890 H8C1 S10 22
S10 H8C2 2H8C H 0 0 N N N N N N -35.483 53.078 18.906 1.249 -1.123 0.890 H8C2 S10 23
S10 H7C1 1H7C H 0 0 N N N N N N -32.988 53.666 20.270 0.000 1.019 0.890 H7C1 S10 24
S10 H7C2 2H7C H 0 0 N N N N N N -34.202 53.101 21.498 0.000 1.019 -0.890 H7C2 S10 25
S10 H6C1 1H6C H 0 0 N N N N N N -32.631 51.451 20.170 -1.249 -1.123 -0.890 H6C1 S10 26
S10 H6C2 2H6C H 0 0 N N N N N N -34.035 51.573 18.948 -1.249 -1.123 0.890 H6C2 S10 27
S10 H5 H5 H 0 1 N N N N N N -33.818 49.983 21.270 -2.356 1.318 0.000 H5 S10 28
S10 H2C1 1H2C H 0 0 N N N N N N -36.239 48.020 19.487 -6.203 -0.661 -0.890 H2C1 S10 29
S10 H2C2 2H2C H 0 0 N N N N N N -37.642 47.914 20.595 -6.203 -0.661 0.890 H2C2 S10 30
S10 H1C1 1H1C H 0 0 N N N N N N -36.733 46.176 21.810 -8.144 0.599 0.000 H1C1 S10 31
S10 H1C2 2H1C H 0 0 N N N N N N -35.047 46.752 21.573 -7.039 1.673 0.890 H1C2 S10 32
S10 H1C3 3H1C H 0 0 N N N N N N -35.890 45.870 20.254 -7.039 1.673 -0.890 H1C3 S10 33
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S10 O15 C10 DOUB N N 1
S10 C10 O11 SING N N 2
S10 C10 N9 SING N N 3
S10 O11 C12 SING N N 4
S10 C12 C13 SING N N 5
S10 C12 H121 SING N N 6
S10 C12 H122 SING N N 7
S10 C13 H131 SING N N 8
S10 C13 H132 SING N N 9
S10 C13 H133 SING N N 10
S10 N9 C8 SING N N 11
S10 N9 H9 SING N N 12
S10 C8 C7 SING N N 13
S10 C8 H8C1 SING N N 14
S10 C8 H8C2 SING N N 15
S10 C7 C6 SING N N 16
S10 C7 H7C1 SING N N 17
S10 C7 H7C2 SING N N 18
S10 C6 N5 SING N N 19
S10 C6 H6C1 SING N N 20
S10 C6 H6C2 SING N N 21
S10 N5 C4 SING N N 22
S10 N5 H5 SING N N 23
S10 C4 O14 DOUB N N 24
S10 C4 O3 SING N N 25
S10 O3 C2 SING N N 26
S10 C2 C1 SING N N 27
S10 C2 H2C1 SING N N 28
S10 C2 H2C2 SING N N 29
S10 C1 H1C1 SING N N 30
S10 C1 H1C2 SING N N 31
S10 C1 H1C3 SING N N 32
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S10 SMILES ACDLabs 10.04 O=C(OCC)NCCCNC(=O)OCC
S10 SMILES_CANONICAL CACTVS 3.341 CCOC(=O)NCCCNC(=O)OCC
S10 SMILES CACTVS 3.341 CCOC(=O)NCCCNC(=O)OCC
S10 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCOC(=O)NCCCNC(=O)OCC
S10 SMILES "OpenEye OEToolkits" 1.5.0 CCOC(=O)NCCCNC(=O)OCC
S10 InChI InChI 1.03 InChI=1S/C9H18N2O4/c1-3-14-8(12)10-6-5-7-11-9(13)15-4-2/h3-7H2,1-2H3,(H,10,12)(H,11,13)
S10 InChIKey InChI 1.03 BWWHOVJFNMPUKF-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S10 "SYSTEMATIC NAME" ACDLabs 10.04 "diethyl propane-1,3-diylbiscarbamate"
S10 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "ethyl N-[3-(ethoxycarbonylamino)propyl]carbamate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S10 'Create component' 2005-10-26 EBI
S10 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id S10
_pdbe_chem_comp_drugbank_details.drugbank_id DB08501
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'DIETHYL PROPANE-1,3-DIYLBISCARBAMATE'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id S10
_pdbe_chem_comp_synonyms.name 'DIETHYL PROPANE-1,3-DIYLBISCARBAMATE'
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id S10
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08501
_pdbe_chem_comp_drugbank_classification.parent 'Carbamate esters'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as carbamate esters. These are compounds containing an ester of carbamic acid with the general structure R2NC(=O)OR' (R' not H). They are esters of carbamic acids."
#
_pdbe_chem_comp_drugbank_targets.comp_id S10
_pdbe_chem_comp_drugbank_targets.drugbank_id DB08501
_pdbe_chem_comp_drugbank_targets.name 'Shiga-like toxin 1 subunit B'
_pdbe_chem_comp_drugbank_targets.organism 'Bacteriophage H30'
_pdbe_chem_comp_drugbank_targets.uniprot_id P69178
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
S10 O15 O 14.691 -1.590 1
S10 C10 C 14.691 -0.090 2
S10 O11 O 15.990 0.660 3
S10 C12 C 17.290 -0.090 4
S10 C13 C 18.588 0.660 5
S10 N9 N 13.392 0.660 6
S10 C8 C 12.093 -0.090 7
S10 C7 C 10.794 0.660 8
S10 C6 C 9.495 -0.090 9
S10 N5 N 8.196 0.660 10
S10 C4 C 6.897 -0.090 11
S10 O14 O 6.897 -1.590 12
S10 O3 O 5.598 0.660 13
S10 C2 C 4.299 -0.090 14
S10 C1 C 3.000 0.660 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
S10 O15 C10 DOUBLE NONE 1
S10 C10 O11 SINGLE NONE 2
S10 C10 N9 SINGLE NONE 3
S10 O11 C12 SINGLE NONE 4
S10 C12 C13 SINGLE NONE 5
S10 N9 C8 SINGLE NONE 6
S10 C8 C7 SINGLE NONE 7
S10 C7 C6 SINGLE NONE 8
S10 C6 N5 SINGLE NONE 9
S10 N5 C4 SINGLE NONE 10
S10 C4 O14 DOUBLE NONE 11
S10 C4 O3 SINGLE NONE 12
S10 O3 C2 SINGLE NONE 13
S10 C2 C1 SINGLE NONE 14
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id S10
_pdbe_chem_comp_rdkit_properties.exactmw 218.127
_pdbe_chem_comp_rdkit_properties.amw 218.253
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 33
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.778
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 114.714
_pdbe_chem_comp_rdkit_properties.tpsa 76.660
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.869
_pdbe_chem_comp_rdkit_properties.CrippenMR 54.666
_pdbe_chem_comp_rdkit_properties.chi0v 7.027
_pdbe_chem_comp_rdkit_properties.chi1v 3.119
_pdbe_chem_comp_rdkit_properties.chi2v 0.683
_pdbe_chem_comp_rdkit_properties.chi3v 0.683
_pdbe_chem_comp_rdkit_properties.chi4v 0.305
_pdbe_chem_comp_rdkit_properties.chi0n 25.027
_pdbe_chem_comp_rdkit_properties.chi1n 12.014
_pdbe_chem_comp_rdkit_properties.chi2n 0.683
_pdbe_chem_comp_rdkit_properties.chi3n 0.683
_pdbe_chem_comp_rdkit_properties.chi4n 0.305
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.460
_pdbe_chem_comp_rdkit_properties.kappa1 2.283
_pdbe_chem_comp_rdkit_properties.kappa2 9.109
_pdbe_chem_comp_rdkit_properties.kappa3 8.859
_pdbe_chem_comp_rdkit_properties.Phi 1.386
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
S10 UniChem DrugBank DB08501
S10 UniChem ZINC ZINC000001648938
S10 UniChem ACTor 818-45-1
S10 UniChem 'Probes And Drugs' PD004800
S10 UniChem 'EPA CompTox Dashboard' DTXSID50304388
S10 UniChem eMolecules 4995200
S10 UniChem fdasrs F54CSU6844
S10 UniChem PubChem 295941
S10 UniChem Mcule MCULE-6546189117
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
S10 O15 -0.958 1.189 1.388 ETKDGv3 1
S10 C10 -1.476 0.332 0.620 ETKDGv3 2
S10 O11 -2.437 0.711 -0.324 ETKDGv3 3
S10 C12 -2.910 2.048 -0.469 ETKDGv3 4
S10 C13 -3.885 2.399 0.649 ETKDGv3 5
S10 N9 -1.072 -1.038 0.694 ETKDGv3 6
S10 C8 -0.020 -1.478 1.612 ETKDGv3 7
S10 C7 0.434 -2.917 1.316 ETKDGv3 8
S10 C6 1.035 -3.097 -0.087 ETKDGv3 9
S10 N5 2.147 -2.172 -0.306 ETKDGv3 10
S10 C4 2.012 -0.966 -1.068 ETKDGv3 11
S10 O14 0.987 -0.771 -1.777 ETKDGv3 12
S10 O3 3.027 -0.005 -1.009 ETKDGv3 13
S10 C2 2.931 1.274 -1.634 ETKDGv3 14
S10 C1 1.972 2.178 -0.866 ETKDGv3 15
S10 H121 -3.438 2.132 -1.442 ETKDGv3 16
S10 H122 -2.057 2.762 -0.477 ETKDGv3 17
S10 H131 -4.730 1.679 0.654 ETKDGv3 18
S10 H132 -3.374 2.369 1.633 ETKDGv3 19
S10 H133 -4.285 3.422 0.487 ETKDGv3 20
S10 H9 -1.541 -1.724 0.061 ETKDGv3 21
S10 H8C1 0.852 -0.792 1.545 ETKDGv3 22
S10 H8C2 -0.407 -1.428 2.652 ETKDGv3 23
S10 H7C1 -0.432 -3.605 1.431 ETKDGv3 24
S10 H7C2 1.195 -3.209 2.072 ETKDGv3 25
S10 H6C1 1.413 -4.137 -0.180 ETKDGv3 26
S10 H6C2 0.251 -2.971 -0.864 ETKDGv3 27
S10 H5 3.025 -2.316 0.241 ETKDGv3 28
S10 H2C1 3.938 1.742 -1.638 ETKDGv3 29
S10 H2C2 2.597 1.165 -2.689 ETKDGv3 30
S10 H1C1 2.297 2.263 0.192 ETKDGv3 31
S10 H1C2 1.966 3.190 -1.324 ETKDGv3 32
S10 H1C3 0.941 1.768 -0.898 ETKDGv3 33
#