data_RTL
#
_chem_comp.id RTL
_chem_comp.name RETINOL
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H30 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2020-09-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 286.452
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RTL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1AQB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RTL C1 C1 C 0 1 N N N N N N 0.507 4.585 -7.709 -4.435 0.902 -0.408 C1 RTL 1
RTL C2 C2 C 0 1 N N N N N N 0.780 6.020 -8.208 -5.583 0.142 -1.075 C2 RTL 2
RTL C3 C3 C 0 1 N N N N N N -0.086 7.022 -7.465 -6.084 -0.934 -0.103 C3 RTL 3
RTL C4 C4 C 0 1 N N N N N N -0.682 7.049 -6.069 -4.993 -1.997 0.049 C4 RTL 4
RTL C5 C5 C 0 1 N N N N N N -0.603 5.593 -5.622 -3.675 -1.345 0.349 C5 RTL 5
RTL C6 C6 C 0 1 N N N N N N -0.146 4.500 -6.320 -3.427 -0.064 0.143 C6 RTL 6
RTL C7 C7 C 0 1 N N N N N N -0.288 3.138 -5.805 -2.095 0.442 0.470 C7 RTL 7
RTL C8 C8 C 0 1 N N N N N N -1.467 2.550 -5.517 -0.998 -0.125 -0.091 C8 RTL 8
RTL C9 C9 C 0 1 N N N N N N -1.531 1.175 -5.043 0.288 0.334 0.257 C9 RTL 9
RTL C10 C10 C 0 1 N N N N N N -2.732 0.697 -4.592 1.388 -0.234 -0.306 C10 RTL 10
RTL C11 C11 C 0 1 N N N N N N -3.071 -0.664 -4.129 2.674 0.225 0.042 C11 RTL 11
RTL C12 C12 C 0 1 N N N N N N -4.419 -0.846 -4.040 3.772 -0.341 -0.519 C12 RTL 12
RTL C13 C13 C 0 1 N N N N N N -5.257 -2.000 -3.734 5.106 0.135 -0.158 C13 RTL 13
RTL C14 C14 C 0 1 N N N N N N -6.485 -2.094 -3.147 6.186 -0.423 -0.711 C14 RTL 14
RTL C15 C15 C 0 1 N N N N N N -6.895 -3.403 -2.612 7.561 0.068 -0.338 C15 RTL 15
RTL O1 O1 O 0 1 N N N N N N -7.316 -3.327 -1.315 8.418 -1.051 -0.102 O1 RTL 16
RTL C16 C16 C 0 1 N N N N N N 1.944 4.031 -7.690 -4.989 1.762 0.730 C16 RTL 17
RTL C17 C17 C 0 1 N N N N N N -0.274 3.923 -8.847 -3.759 1.807 -1.441 C17 RTL 18
RTL C18 C18 C 0 1 N N N N N N -1.516 5.371 -4.416 -2.572 -2.200 0.917 C18 RTL 19
RTL C19 C19 C 0 1 N N N N N N -0.216 0.485 -4.685 0.445 1.455 1.252 C19 RTL 20
RTL C20 C20 C 0 1 N N N N N N -4.209 -3.037 -3.331 5.262 1.255 0.837 C20 RTL 21
RTL H21 H21 H 0 1 N N N N N N 1.839 6.265 -8.041 -6.395 0.832 -1.306 H21 RTL 22
RTL H22 H22 H 0 1 N N N N N N 0.556 6.077 -9.283 -5.228 -0.329 -1.991 H22 RTL 23
RTL H31 H31 H 0 1 N N N N N N 0.509 7.946 -7.503 -6.293 -0.483 0.867 H31 RTL 24
RTL H32 H32 H 0 1 N N N N N N -0.966 7.126 -8.117 -6.989 -1.393 -0.500 H32 RTL 25
RTL H41 H41 H 0 1 N N N N N N -0.094 7.698 -5.403 -5.257 -2.671 0.864 H41 RTL 26
RTL H42 H42 H 0 1 N N N N N N -1.725 7.397 -6.093 -4.913 -2.567 -0.876 H42 RTL 27
RTL H7 H7 H 0 1 N N N N N N 0.613 2.564 -5.645 -1.984 1.267 1.158 H7 RTL 28
RTL H8 H8 H 0 1 N N N N N N -2.382 3.110 -5.640 -1.110 -0.928 -0.805 H8 RTL 29
RTL H10 H10 H 0 1 N N N N N N -3.541 1.412 -4.572 1.276 -1.037 -1.019 H10 RTL 30
RTL H11 H11 H 0 1 N N N N N N -2.340 -1.422 -3.890 2.787 1.028 0.756 H11 RTL 31
RTL H12 H12 H 0 1 N N N N N N -4.985 0.052 -4.237 3.659 -1.144 -1.232 H12 RTL 32
RTL H14 H14 H 0 1 N N N N N N -7.136 -1.235 -3.077 6.074 -1.226 -1.424 H14 RTL 33
RTL H151 H151 H 0 0 N N N N N N -7.718 -3.794 -3.228 7.965 0.669 -1.153 H151 RTL 34
RTL H152 H152 H 0 0 N N N N N N -6.038 -4.091 -2.665 7.498 0.674 0.565 H152 RTL 35
RTL HO1 HO1 H 0 1 N N N N N N -7.570 -4.191 -1.013 9.322 -0.809 0.142 HO1 RTL 36
RTL H161 H161 H 0 0 N N N N N N 1.930 2.986 -7.347 -5.477 1.121 1.465 H161 RTL 37
RTL H162 H162 H 0 0 N N N N N N 2.369 4.079 -8.704 -4.173 2.305 1.206 H162 RTL 38
RTL H163 H163 H 0 0 N N N N N N 2.560 4.633 -7.006 -5.713 2.472 0.330 H163 RTL 39
RTL H171 H171 H 0 0 N N N N N N -0.513 2.885 -8.573 -4.507 2.452 -1.903 H171 RTL 40
RTL H172 H172 H 0 0 N N N N N N -1.206 4.479 -9.024 -3.005 2.420 -0.948 H172 RTL 41
RTL H173 H173 H 0 0 N N N N N N 0.336 3.929 -9.762 -3.285 1.193 -2.207 H173 RTL 42
RTL H181 H181 H 0 0 N N N N N N -1.455 4.320 -4.098 -2.954 -3.201 1.115 H181 RTL 43
RTL H182 H182 H 0 0 N N N N N N -1.197 6.023 -3.590 -1.752 -2.259 0.201 H182 RTL 44
RTL H183 H183 H 0 0 N N N N N N -2.553 5.611 -4.693 -2.212 -1.758 1.847 H183 RTL 45
RTL H191 H191 H 0 0 N N N N N N -0.420 -0.541 -4.345 0.520 1.040 2.257 H191 RTL 46
RTL H192 H192 H 0 0 N N N N N N 0.435 0.455 -5.571 1.348 2.020 1.024 H192 RTL 47
RTL H193 H193 H 0 0 N N N N N N 0.284 1.045 -3.881 -0.421 2.115 1.195 H193 RTL 48
RTL H201 H201 H 0 0 N N N N N N -4.709 -3.981 -3.068 5.337 0.840 1.843 H201 RTL 49
RTL H202 H202 H 0 0 N N N N N N -3.521 -3.209 -4.172 6.166 1.821 0.609 H202 RTL 50
RTL H203 H203 H 0 0 N N N N N N -3.643 -2.668 -2.463 4.396 1.915 0.781 H203 RTL 51
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RTL C1 C2 SING N N 1
RTL C1 C6 SING N N 2
RTL C1 C16 SING N N 3
RTL C1 C17 SING N N 4
RTL C2 C3 SING N N 5
RTL C2 H21 SING N N 6
RTL C2 H22 SING N N 7
RTL C3 C4 SING N N 8
RTL C3 H31 SING N N 9
RTL C3 H32 SING N N 10
RTL C4 C5 SING N N 11
RTL C4 H41 SING N N 12
RTL C4 H42 SING N N 13
RTL C5 C6 DOUB N N 14
RTL C5 C18 SING N N 15
RTL C6 C7 SING N N 16
RTL C7 C8 DOUB N E 17
RTL C7 H7 SING N N 18
RTL C8 C9 SING N N 19
RTL C8 H8 SING N N 20
RTL C9 C10 DOUB N E 21
RTL C9 C19 SING N N 22
RTL C10 C11 SING N N 23
RTL C10 H10 SING N N 24
RTL C11 C12 DOUB N E 25
RTL C11 H11 SING N N 26
RTL C12 C13 SING N N 27
RTL C12 H12 SING N N 28
RTL C13 C14 DOUB N E 29
RTL C13 C20 SING N N 30
RTL C14 C15 SING N N 31
RTL C14 H14 SING N N 32
RTL C15 O1 SING N N 33
RTL C15 H151 SING N N 34
RTL C15 H152 SING N N 35
RTL O1 HO1 SING N N 36
RTL C16 H161 SING N N 37
RTL C16 H162 SING N N 38
RTL C16 H163 SING N N 39
RTL C17 H171 SING N N 40
RTL C17 H172 SING N N 41
RTL C17 H173 SING N N 42
RTL C18 H181 SING N N 43
RTL C18 H182 SING N N 44
RTL C18 H183 SING N N 45
RTL C19 H191 SING N N 46
RTL C19 H192 SING N N 47
RTL C19 H193 SING N N 48
RTL C20 H201 SING N N 49
RTL C20 H202 SING N N 50
RTL C20 H203 SING N N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RTL SMILES ACDLabs 12.01 C1(CCCC(=C1\C=C\C(=C\C=C\C(=C\CO)C)C)C)(C)C
RTL InChI InChI 1.03 InChI=1S/C20H30O/c1-16(8-6-9-17(2)13-15-21)11-12-19-18(3)10-7-14-20(19,4)5/h6,8-9,11-13,21H,7,10,14-15H2,1-5H3/b9-6+,12-11+,16-8+,17-13+
RTL InChIKey InChI 1.03 FPIPGXGPPPQFEQ-OVSJKPMPSA-N
RTL SMILES_CANONICAL CACTVS 3.385 CC(=C\CO)/C=C/C=C(C)/C=C/C1=C(C)CCCC1(C)C
RTL SMILES CACTVS 3.385 CC(=CCO)C=CC=C(C)C=CC1=C(C)CCCC1(C)C
RTL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/CO)/C)/C
RTL SMILES "OpenEye OEToolkits" 2.0.7 CC1=C(C(CCC1)(C)C)C=CC(=CC=CC(=CCO)C)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RTL "SYSTEMATIC NAME" ACDLabs 12.01 retinol
RTL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 (2~{E},4~{E},6~{E},8~{E})-3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,4,6,8-tetraen-1-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RTL 'Create component' 1999-07-08 RCSB
RTL 'Modify descriptor' 2011-06-04 RCSB
RTL 'Modify coordinates' 2020-06-03 RCSB
RTL 'Other modification' 2020-09-03 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id RTL
_pdbe_chem_comp_drugbank_details.drugbank_id DB00162
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Vitamin A'
_pdbe_chem_comp_drugbank_details.description
'Retinol and derivatives of retinol that play an essential role in metabolic functioning of the retina, the growth of and differentiation of epithelial tissue, the growth of bone, reproduction, and the immune response. Dietary vitamin A is derived from a variety of carotenoids found in plants. It is enriched in the liver, egg yolks, and the fat component of dairy products.'
_pdbe_chem_comp_drugbank_details.cas_number 68-26-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Vision:Vitamin A (all-trans retinol) is converted in the retina to the 11-cis-isomer of retinaldehyde or 11-cis-retinal. 11-cis-retinal functions in the retina in the transduction of light into the neural signals necessary for vision. 11-cis-retinal, while attached to opsin in rhodopsin is isomerized to all-trans-retinal by light. This is the event that triggers the nerve impulse to the brain which allows for the perception of light. All-trans-retinal is then released from opsin and reduced to all-trans-retinol. All-trans-retinol is isomerized to 11-cis-retinol in the dark, and then oxidized to 11-cis-retinal. 11-cis-retinal recombines with opsin to re-form rhodopsin. Night blindness or defective vision at low illumination results from a failure to re-synthesize 11-cis retinal rapidly. Epithelial differentiation: The role of Vitamin A in epithelial differentiation, as well as in other physiological processes, involves the binding of Vitamin A to two families of nuclear retinoid receptors (retinoic acid receptors, RARs; and retinoid-X receptors, RXRs). These receptors function as ligand-activated transcription factors that modulate gene transcription. When there is not enough Vitamin A to bind these receptors, natural cell differentiation and growth are interrupted.'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
RTL (2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)nona-2,4,6,8-tetraen-1-ol DrugBank ?
RTL all-trans-retinol DrugBank ?
RTL 'all-trans-retinyl alcohol' DrugBank ?
RTL 'all-trans-vitamin A alcohol' DrugBank ?
RTL Retinol DrugBank ?
RTL Retinolum DrugBank ?
RTL 'Vitamin A Alcohol' DrugBank ?
RTL 'Vitamin A1' DrugBank ?
RTL Alphalin DrugBank 'International brand'
RTL 'Chocola A' DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id RTL
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00162
_pdbe_chem_comp_drugbank_classification.parent Retinoids
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Prenol lipids'
_pdbe_chem_comp_drugbank_classification.superclass 'Lipids and lipid-like molecules'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as retinoids. These are oxygenated derivatives of 3,7-dimethyl-1-(2,6,6-trimethylcyclohex-1-enyl)nona-1,3,5,7-tetraene and derivatives thereof.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
RTL DB00162 'Retinoic acid receptor RXR-gamma' Humans P48443 unknown 1
RTL DB00162 'Apolipoprotein D' Humans P05090 unknown 2
RTL DB00162 'Prostaglandin-H2 D-isomerase' Humans P41222 unknown 3
RTL DB00162 'Retinol dehydrogenase 12' Humans Q96NR8 unknown 4
RTL DB00162 'Retinol dehydrogenase 5' Humans Q92781 unknown 5
RTL DB00162 'Retinol dehydrogenase 13' Humans Q8NBN7 unknown 6
RTL DB00162 'Retinal dehydrogenase 2' Humans O94788 unknown 7
RTL DB00162 'Aldehyde dehydrogenase 1A1' Humans P00352 unknown 8
RTL DB00162 'Lecithin retinol acyltransferase' Humans O95237 unknown 9
RTL DB00162 'Short-chain dehydrogenase/reductase 3' Humans O75911 unknown 10
RTL DB00162 'Retinaldehyde dehydrogenase 3' Humans P47895 unknown 11
RTL DB00162 'All-trans-retinol 13,14-reductase' Humans Q6NUM9 unknown 12
RTL DB00162 'Retinol dehydrogenase 11' Humans Q8TC12 unknown 13
RTL DB00162 'Dehydrogenase/reductase SDR family member 4' Humans Q9BTZ2 unknown 14
RTL DB00162 'Retinol dehydrogenase 14' Humans Q9HBH5 unknown 15
RTL DB00162 'Retinol dehydrogenase 8' Humans Q9NYR8 unknown 16
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RTL C1 C 4.500 -5.340 1
RTL C2 C 4.500 -6.840 2
RTL C3 C 5.799 -7.590 3
RTL C4 C 7.098 -6.840 4
RTL C5 C 7.098 -5.340 5
RTL C6 C 5.799 -4.590 6
RTL C7 C 5.799 -3.090 7
RTL C8 C 7.098 -2.340 8
RTL C9 C 7.098 -0.840 9
RTL C10 C 8.397 -0.090 10
RTL C11 C 8.397 1.410 11
RTL C12 C 9.696 2.160 12
RTL C13 C 9.696 3.660 13
RTL C14 C 10.995 4.410 14
RTL C15 C 10.995 5.910 15
RTL O1 O 12.294 6.660 16
RTL C16 C 3.000 -5.340 17
RTL C17 C 3.750 -4.041 18
RTL C18 C 8.397 -4.590 19
RTL C19 C 5.799 -0.090 20
RTL C20 C 8.397 4.410 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RTL C1 C2 SINGLE NONE 1
RTL C1 C6 SINGLE NONE 2
RTL C1 C16 SINGLE NONE 3
RTL C1 C17 SINGLE NONE 4
RTL C2 C3 SINGLE NONE 5
RTL C3 C4 SINGLE NONE 6
RTL C4 C5 SINGLE NONE 7
RTL C5 C6 DOUBLE NONE 8
RTL C5 C18 SINGLE NONE 9
RTL C6 C7 SINGLE ENDUPRIGHT 10
RTL C7 C8 DOUBLE NONE 11
RTL C8 C9 SINGLE ENDUPRIGHT 12
RTL C9 C10 DOUBLE NONE 13
RTL C9 C19 SINGLE ENDUPRIGHT 14
RTL C10 C11 SINGLE ENDUPRIGHT 15
RTL C11 C12 DOUBLE NONE 16
RTL C12 C13 SINGLE ENDUPRIGHT 17
RTL C13 C14 DOUBLE NONE 18
RTL C13 C20 SINGLE ENDUPRIGHT 19
RTL C14 C15 SINGLE ENDUPRIGHT 20
RTL C15 O1 SINGLE NONE 21
#
_pdbe_chem_comp_substructure.comp_id RTL
_pdbe_chem_comp_substructure.substructure_name MurckoScaffold
_pdbe_chem_comp_substructure.id S1
_pdbe_chem_comp_substructure.substructure_type scaffold
_pdbe_chem_comp_substructure.substructure_smiles C1=CCCCC1
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C6H10/c1-2-4-6-5-3-1/h1-2H,3-6H2
_pdbe_chem_comp_substructure.substructure_inchikeys HGCIXCUEYOPUTN-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RTL C1 S1 1
RTL C2 S1 1
RTL C3 S1 1
RTL C4 S1 1
RTL C5 S1 1
RTL C6 S1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RTL
_pdbe_chem_comp_rdkit_properties.exactmw 286.230
_pdbe_chem_comp_rdkit_properties.amw 286.459
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 51
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 172.249
_pdbe_chem_comp_rdkit_properties.tpsa 20.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.510
_pdbe_chem_comp_rdkit_properties.CrippenMR 93.212
_pdbe_chem_comp_rdkit_properties.chi0v 10.408
_pdbe_chem_comp_rdkit_properties.chi1v 5.204
_pdbe_chem_comp_rdkit_properties.chi2v 1.926
_pdbe_chem_comp_rdkit_properties.chi3v 1.926
_pdbe_chem_comp_rdkit_properties.chi4v 1.051
_pdbe_chem_comp_rdkit_properties.chi0n 40.408
_pdbe_chem_comp_rdkit_properties.chi1n 20.112
_pdbe_chem_comp_rdkit_properties.chi2n 1.926
_pdbe_chem_comp_rdkit_properties.chi3n 1.926
_pdbe_chem_comp_rdkit_properties.chi4n 1.051
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.340
_pdbe_chem_comp_rdkit_properties.kappa1 2.776
_pdbe_chem_comp_rdkit_properties.kappa2 8.188
_pdbe_chem_comp_rdkit_properties.kappa3 5.887
_pdbe_chem_comp_rdkit_properties.Phi 1.082
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RTL UniChem DrugBank DB00162
RTL UniChem 'Guide to Pharmacology' 4053
RTL UniChem 'KEGG LIGAND' C00473
RTL UniChem 'KEGG LIGAND' C17276
RTL UniChem ChEBI 17336
RTL UniChem ZINC ZINC000003831417
RTL UniChem atlas 'vitamin A'
RTL UniChem fdasrs G2SH0XKK91
RTL UniChem PharmGKB PA451884
RTL UniChem HMDB HMDB0000305
RTL UniChem NMRShiftDB 60018867
RTL UniChem LINCS LSM-43173
RTL UniChem ACTor 11103-57-4
RTL UniChem ACTor 13123-33-6
RTL UniChem Recon 'retinol_9_cis'
RTL UniChem Nikkaji J1.417F
RTL UniChem Nikkaji J641.435D
RTL UniChem BindingDb 50092056
RTL UniChem DrugCentral 2831
RTL UniChem MetaboLights MTBLC17336
RTL UniChem BRENDA 1356
RTL UniChem BRENDA 136538
RTL UniChem BRENDA 30643
RTL UniChem BRENDA 5515
RTL UniChem BRENDA 57274
RTL UniChem BRENDA 7302
RTL UniChem BRENDA 847
RTL UniChem Rhea 17336
RTL UniChem ChemicalBook CB3512063
RTL UniChem ChemicalBook CB8194893
RTL UniChem SwissLipids SLM:000000511
RTL UniChem eMolecules 485716
RTL UniChem eMolecules 6760397
RTL UniChem SureChEMBL SCHEMBL3112
RTL UniChem 'PubChem TPHARMA' 14799924
RTL UniChem PubChem 445354
RTL UniChem Mcule MCULE-4951251283
RTL UniChem ACTor 22737-96-8
RTL UniChem ACTor 68-26-8
RTL UniChem Nikkaji J490.500H
RTL UniChem Nikkaji J540.270K
RTL UniChem Nikkaji J641.040E
RTL UniChem Nikkaji J641.434F
RTL UniChem 'EPA CompTox Dashboard' DTXSID3023556
RTL UniChem LipidMaps LMPR01090001
RTL UniChem DailyMed RETINOL
RTL UniChem ClinicalTrials RETINOL
RTL UniChem ClinicalTrials 'VITAMIN A'
RTL UniChem rxnorm ALL-TRANS-RETINOL
RTL UniChem rxnorm 'RETINOL ACETATE'
RTL UniChem rxnorm 'VITAMIN A'
RTL UniChem 'Probes And Drugs' PD001451
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RTL C1 -3.589 -0.222 1.803 ETKDGv3 1
RTL C2 -5.097 -0.586 1.874 ETKDGv3 2
RTL C3 -5.548 -1.368 0.646 ETKDGv3 3
RTL C4 -5.347 -0.517 -0.603 ETKDGv3 4
RTL C5 -3.963 0.085 -0.694 ETKDGv3 5
RTL C6 -3.181 0.274 0.406 ETKDGv3 6
RTL C7 -1.837 0.885 0.261 ETKDGv3 7
RTL C8 -0.828 0.211 -0.303 ETKDGv3 8
RTL C9 0.545 0.760 -0.424 ETKDGv3 9
RTL C10 1.572 -0.112 -0.467 ETKDGv3 10
RTL C11 2.996 0.285 -0.512 ETKDGv3 11
RTL C12 3.959 -0.639 -0.623 ETKDGv3 12
RTL C13 5.409 -0.312 -0.655 ETKDGv3 13
RTL C14 6.283 -1.295 -0.362 ETKDGv3 14
RTL C15 7.773 -1.115 -0.295 ETKDGv3 15
RTL O1 8.290 -0.969 -1.588 ETKDGv3 16
RTL C16 -2.736 -1.460 2.159 ETKDGv3 17
RTL C17 -3.324 0.876 2.859 ETKDGv3 18
RTL C18 -3.545 0.612 -2.047 ETKDGv3 19
RTL C19 0.770 2.253 -0.486 ETKDGv3 20
RTL C20 5.865 1.103 -0.938 ETKDGv3 21
RTL H21 -5.315 -1.182 2.787 ETKDGv3 22
RTL H22 -5.713 0.340 1.940 ETKDGv3 23
RTL H31 -4.984 -2.320 0.555 ETKDGv3 24
RTL H32 -6.626 -1.622 0.746 ETKDGv3 25
RTL H41 -6.093 0.307 -0.610 ETKDGv3 26
RTL H42 -5.538 -1.156 -1.493 ETKDGv3 27
RTL H7 -1.673 1.859 0.702 ETKDGv3 28
RTL H8 -1.009 -0.805 -0.638 ETKDGv3 29
RTL H10 1.352 -1.174 -0.441 ETKDGv3 30
RTL H11 3.263 1.328 -0.416 ETKDGv3 31
RTL H12 3.672 -1.685 -0.662 ETKDGv3 32
RTL H14 5.907 -2.283 -0.120 ETKDGv3 33
RTL H151 8.221 -2.016 0.179 ETKDGv3 34
RTL H152 8.025 -0.231 0.332 ETKDGv3 35
RTL HO1 9.267 -0.830 -1.478 ETKDGv3 36
RTL H161 -2.836 -2.251 1.388 ETKDGv3 37
RTL H162 -1.659 -1.192 2.226 ETKDGv3 38
RTL H163 -3.041 -1.882 3.141 ETKDGv3 39
RTL H171 -2.238 1.089 2.960 ETKDGv3 40
RTL H172 -3.841 1.819 2.577 ETKDGv3 41
RTL H173 -3.695 0.557 3.857 ETKDGv3 42
RTL H181 -4.361 0.504 -2.792 ETKDGv3 43
RTL H182 -3.292 1.692 -1.976 ETKDGv3 44
RTL H183 -2.666 0.048 -2.421 ETKDGv3 45
RTL H191 -0.164 2.794 -0.743 ETKDGv3 46
RTL H192 1.145 2.618 0.493 ETKDGv3 47
RTL H193 1.498 2.506 -1.285 ETKDGv3 48
RTL H201 6.883 1.142 -1.372 ETKDGv3 49
RTL H202 5.195 1.583 -1.681 ETKDGv3 50
RTL H203 5.850 1.692 0.003 ETKDGv3 51
#