data_RIX
#
_chem_comp.id RIX
_chem_comp.name "methyl 2-(4-chloranylindol-1-yl)-2-oxidanylidene-ethanoate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H8 Cl N O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-11-30
_chem_comp.pdbx_modified_date 2022-12-09
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 237.639
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RIX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8BTE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RIX C01 C1 C 0 1 N N N N N N 22.933 67.065 71.663 5.462 -0.522 0.006 C01 RIX 1
RIX C03 C2 C 0 1 N N N N N N 25.001 67.857 72.406 3.091 -0.257 0.000 C03 RIX 2
RIX C05 C3 C 0 1 N N N N N N 26.390 67.646 72.941 1.846 0.567 -0.003 C05 RIX 3
RIX C08 C4 C 0 1 Y N N N N N 26.678 65.607 71.419 0.433 -1.392 -0.006 C08 RIX 4
RIX C09 C5 C 0 1 Y N N N N N 27.797 64.627 71.244 -0.882 -1.653 -0.004 C09 RIX 5
RIX C10 C6 C 0 1 Y N N N N N 28.901 65.094 72.187 -1.579 -0.362 -0.002 C10 RIX 6
RIX C11 C7 C 0 1 Y N N N N N 30.156 64.564 72.441 -2.924 0.012 0.002 C11 RIX 7
RIX C12 C8 C 0 1 Y N N N N N 31.035 65.123 73.355 -3.260 1.349 0.003 C12 RIX 8
RIX C13 C9 C 0 1 Y N N N N N 30.643 66.282 74.039 -2.270 2.320 0.002 C13 RIX 9
RIX C14 C10 C 0 1 Y N N N N N 29.391 66.835 73.795 -0.937 1.965 -0.002 C14 RIX 10
RIX C15 C11 C 0 1 Y N N N N N 28.522 66.235 72.856 -0.577 0.623 -0.003 C15 RIX 11
RIX N07 N1 N 0 1 Y N N N N N 27.158 66.564 72.411 0.640 -0.034 -0.006 N07 RIX 12
RIX O02 O1 O 0 1 N N N N N N 24.079 66.812 72.419 4.295 0.343 0.004 O02 RIX 13
RIX O04 O2 O 0 1 N N N N N N 24.719 68.926 72.022 3.016 -1.468 0.000 O04 RIX 14
RIX O06 O3 O 0 1 N N N N N N 26.836 68.375 73.751 1.921 1.778 -0.002 O06 RIX 15
RIX CL16 CL1 CL 0 0 N N N N N N 30.533 63.108 71.542 -4.167 -1.200 0.003 CL16 RIX 16
RIX H1 H1 H 0 1 N N N N N N 22.256 66.200 71.721 6.366 0.088 0.009 H1 RIX 17
RIX H2 H2 H 0 1 N N N N N N 22.423 67.956 72.057 5.446 -1.151 0.896 H2 RIX 18
RIX H3 H3 H 0 1 N N N N N N 23.217 67.239 70.614 5.451 -1.151 -0.884 H3 RIX 19
RIX H4 H4 H 0 1 N N N N N N 25.721 65.606 70.918 1.213 -2.138 -0.004 H4 RIX 20
RIX H5 H5 H 0 1 N N N N N N 27.818 63.770 70.588 -1.342 -2.630 -0.004 H5 RIX 21
RIX H6 H6 H 0 1 N N N N N N 32.001 64.675 73.536 -4.299 1.642 0.006 H6 RIX 22
RIX H7 H7 H 0 1 N N N N N N 31.310 66.743 74.752 -2.545 3.365 0.003 H7 RIX 23
RIX H8 H8 H 0 1 N N N N N N 29.082 67.725 74.324 -0.174 2.729 -0.004 H8 RIX 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RIX C09 C08 DOUB Y N 1
RIX C09 C10 SING Y N 2
RIX C08 N07 SING Y N 3
RIX CL16 C11 SING N N 4
RIX C01 O02 SING N N 5
RIX O04 C03 DOUB N N 6
RIX C10 C11 DOUB Y N 7
RIX C10 C15 SING Y N 8
RIX C03 O02 SING N N 9
RIX C03 C05 SING N N 10
RIX N07 C15 SING Y N 11
RIX N07 C05 SING N N 12
RIX C11 C12 SING Y N 13
RIX C15 C14 DOUB Y N 14
RIX C05 O06 DOUB N N 15
RIX C12 C13 DOUB Y N 16
RIX C14 C13 SING Y N 17
RIX C01 H1 SING N N 18
RIX C01 H2 SING N N 19
RIX C01 H3 SING N N 20
RIX C08 H4 SING N N 21
RIX C09 H5 SING N N 22
RIX C12 H6 SING N N 23
RIX C13 H7 SING N N 24
RIX C14 H8 SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RIX InChI InChI 1.06 InChI=1S/C11H8ClNO3/c1-16-11(15)10(14)13-6-5-7-8(12)3-2-4-9(7)13/h2-6H,1H3
RIX InChIKey InChI 1.06 QRAIXQAFCRLHNQ-UHFFFAOYSA-N
RIX SMILES_CANONICAL CACTVS 3.385 COC(=O)C(=O)n1ccc2c(Cl)cccc12
RIX SMILES CACTVS 3.385 COC(=O)C(=O)n1ccc2c(Cl)cccc12
RIX SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 COC(=O)C(=O)n1ccc2c1cccc2Cl
RIX SMILES "OpenEye OEToolkits" 3.1.0.0 COC(=O)C(=O)n1ccc2c1cccc2Cl
#
_pdbx_chem_comp_identifier.comp_id RIX
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 3.1.0.0
_pdbx_chem_comp_identifier.identifier "methyl 2-(4-chloranylindol-1-yl)-2-oxidanylidene-ethanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RIX 'Create component' 2022-11-30 PDBE
RIX 'Initial release' 2022-12-14 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RIX C01 C 10.885 -3.839 1
RIX C03 C 8.951 -2.104 2
RIX C05 C 7.483 -1.794 3
RIX C08 C 7.893 0.839 4
RIX C09 C 7.018 2.046 5
RIX C10 C 5.598 1.589 6
RIX C11 C 4.299 2.339 7
RIX C12 C 3.000 1.589 8
RIX C13 C 3.000 0.089 9
RIX C14 C 4.299 -0.661 10
RIX C15 C 5.598 0.089 11
RIX N07 N 7.018 -0.368 12
RIX O02 O 9.417 -3.529 13
RIX O04 O 9.953 -0.987 14
RIX O06 O 6.482 -2.911 15
RIX CL16 Cl 4.299 3.839 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RIX C09 C08 DOUBLE NONE 1
RIX C09 C10 SINGLE NONE 2
RIX C08 N07 SINGLE NONE 3
RIX CL16 C11 SINGLE NONE 4
RIX C01 O02 SINGLE NONE 5
RIX O04 C03 DOUBLE NONE 6
RIX C10 C11 SINGLE NONE 7
RIX C10 C15 DOUBLE NONE 8
RIX C03 O02 SINGLE NONE 9
RIX C03 C05 SINGLE NONE 10
RIX N07 C15 SINGLE NONE 11
RIX N07 C05 SINGLE NONE 12
RIX C11 C12 DOUBLE NONE 13
RIX C15 C14 SINGLE NONE 14
RIX C05 O06 DOUBLE NONE 15
RIX C12 C13 SINGLE NONE 16
RIX C14 C13 DOUBLE NONE 17
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RIX MurckoScaffold S1 scaffold 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
RIX indole F1 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
RIX peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
RIX phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
RIX pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RIX C08 S1 1
RIX C09 S1 1
RIX C10 S1 1
RIX C11 S1 1
RIX C12 S1 1
RIX C13 S1 1
RIX C14 S1 1
RIX C15 S1 1
RIX N07 S1 1
RIX C15 F1 1
RIX C10 F1 1
RIX C09 F1 1
RIX C08 F1 1
RIX N07 F1 1
RIX C11 F1 1
RIX C12 F1 1
RIX C13 F1 1
RIX C14 F1 1
RIX O04 F2 1
RIX C03 F2 1
RIX C05 F2 1
RIX N07 F2 1
RIX C10 F3 1
RIX C11 F3 1
RIX C12 F3 1
RIX C13 F3 1
RIX C14 F3 1
RIX C15 F3 1
RIX C08 F4 1
RIX C09 F4 1
RIX C10 F4 1
RIX C15 F4 1
RIX N07 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RIX
_pdbe_chem_comp_rdkit_properties.exactmw 237.019
_pdbe_chem_comp_rdkit_properties.amw 237.642
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 24
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.091
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 107.607
_pdbe_chem_comp_rdkit_properties.tpsa 48.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.679
_pdbe_chem_comp_rdkit_properties.CrippenMR 57.385
_pdbe_chem_comp_rdkit_properties.chi0v 8.306
_pdbe_chem_comp_rdkit_properties.chi1v 4.304
_pdbe_chem_comp_rdkit_properties.chi2v 2.080
_pdbe_chem_comp_rdkit_properties.chi3v 2.080
_pdbe_chem_comp_rdkit_properties.chi4v 1.295
_pdbe_chem_comp_rdkit_properties.chi0n 15.550
_pdbe_chem_comp_rdkit_properties.chi1n 7.926
_pdbe_chem_comp_rdkit_properties.chi2n 1.796
_pdbe_chem_comp_rdkit_properties.chi3n 1.796
_pdbe_chem_comp_rdkit_properties.chi4n 1.111
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.810
_pdbe_chem_comp_rdkit_properties.kappa1 4.591
_pdbe_chem_comp_rdkit_properties.kappa2 3.980
_pdbe_chem_comp_rdkit_properties.kappa3 1.569
_pdbe_chem_comp_rdkit_properties.Phi 1.142
#
_pdbe_chem_comp_external_mappings.comp_id RIX
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 166001322
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RIX C01 5.045 0.113 -0.044 ETKDGv3 1
RIX C03 2.580 -0.105 -0.045 ETKDGv3 2
RIX C05 1.266 0.541 0.103 ETKDGv3 3
RIX C08 -0.162 -1.158 -1.188 ETKDGv3 4
RIX C09 -1.459 -1.416 -1.339 ETKDGv3 5
RIX C10 -2.168 -0.552 -0.402 ETKDGv3 6
RIX C11 -3.611 -0.415 -0.134 ETKDGv3 7
RIX C12 -4.002 0.463 0.808 ETKDGv3 8
RIX C13 -2.993 1.265 1.558 ETKDGv3 9
RIX C14 -1.681 1.127 1.296 ETKDGv3 10
RIX C15 -1.273 0.169 0.248 ETKDGv3 11
RIX N07 0.046 -0.164 -0.178 ETKDGv3 12
RIX O02 3.740 0.667 0.075 ETKDGv3 13
RIX O04 2.660 -1.347 -0.251 ETKDGv3 14
RIX O06 1.220 1.740 0.487 ETKDGv3 15
RIX CL16 -4.789 -1.369 -1.017 ETKDGv3 16
RIX H1 5.175 -0.341 -1.049 ETKDGv3 17
RIX H2 5.204 -0.657 0.740 ETKDGv3 18
RIX H3 5.796 0.919 0.087 ETKDGv3 19
RIX H4 0.622 -1.610 -1.780 ETKDGv3 20
RIX H5 -1.891 -2.113 -2.045 ETKDGv3 21
RIX H6 -5.054 0.589 1.033 ETKDGv3 22
RIX H7 -3.321 1.957 2.322 ETKDGv3 23
RIX H8 -0.950 1.697 1.853 ETKDGv3 24
#