data_REA
#
_chem_comp.id REA
_chem_comp.name "RETINOIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H28 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2016-10-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces 3KV
_chem_comp.formula_weight 300.435
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code REA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1CBS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
REA C1 C1 C 0 1 N N N N N N 21.972 29.831 16.739 -4.684 0.932 -0.497 C1 REA 1
REA C2 C2 C 0 1 N N N N N N 20.921 30.524 15.841 -5.837 0.190 -1.176 C2 REA 2
REA C3 C3 C 0 1 N N N N N N 20.245 29.635 14.848 -6.441 -0.798 -0.171 C3 REA 3
REA C4 C4 C 0 1 N N N N N N 19.555 28.479 15.488 -5.418 -1.903 0.100 C4 REA 4
REA C5 C5 C 0 1 N N N N N N 20.389 27.812 16.587 -4.082 -1.301 0.429 C5 REA 5
REA C6 C6 C 0 1 N N N N N N 21.425 28.446 17.218 -3.756 -0.048 0.161 C6 REA 6
REA C7 C7 C 0 1 N N N N N N 22.242 27.851 18.297 -2.457 0.396 0.516 C7 REA 7
REA C8 C8 C 0 1 N N N N N N 21.868 26.977 19.240 -1.363 -0.229 0.007 C8 REA 8
REA C9 C9 C 0 1 N N N N N N 22.705 26.434 20.286 -0.076 0.257 0.298 C9 REA 9
REA C10 C10 C 0 1 N N N N N N 22.159 25.536 21.131 1.022 -0.370 -0.213 C10 REA 10
REA C11 C11 C 0 1 N N N N N N 22.875 24.924 22.234 2.306 0.115 0.077 C11 REA 11
REA C12 C12 C 0 1 N N N N N N 22.237 24.026 22.990 3.405 -0.513 -0.435 C12 REA 12
REA C13 C13 C 0 1 N N N N N N 22.856 23.377 24.125 4.689 -0.028 -0.144 C13 REA 13
REA C14 C14 C 0 1 N N N N N N 22.135 22.473 24.834 5.787 -0.655 -0.656 C14 REA 14
REA C15 C15 C 0 1 N N N N N N 22.563 21.710 26.016 7.077 -0.265 -0.244 C15 REA 15
REA C16 C16 C 0 1 N N N N N N 22.238 30.737 17.948 -5.246 1.886 0.559 C16 REA 16
REA C17 C17 C 0 1 N N N N N N 23.292 29.620 15.948 -3.911 1.737 -1.544 C17 REA 17
REA C18 C18 C 0 1 N N N N N N 19.791 26.449 16.947 -3.056 -2.175 1.103 C18 REA 18
REA C19 C19 C 0 1 N N N N N N 24.181 26.841 20.385 0.090 1.471 1.175 C19 REA 19
REA C20 C20 C 0 1 N N N N N N 24.303 23.747 24.489 4.855 1.186 0.733 C20 REA 20
REA O1 O1 O 0 1 N N N N N N 23.640 21.075 25.978 7.210 0.553 0.648 O1 REA 21
REA O2 O2 O 0 1 N N N N N N 21.840 21.712 27.037 8.166 -0.798 -0.840 O2 REA 22
REA H21 H21 H 0 1 N N N N N N 20.147 30.955 16.494 -6.598 0.905 -1.490 H21 REA 23
REA H22 H22 H 0 1 N N N N N N 21.425 31.330 15.288 -5.462 -0.353 -2.044 H22 REA 24
REA H31 H31 H 0 1 N N N N N N 19.501 30.227 14.295 -6.673 -0.278 0.759 H31 REA 25
REA H32 H32 H 0 1 N N N N N N 21.001 29.250 14.148 -7.349 -1.234 -0.586 H32 REA 26
REA H41 H41 H 0 1 N N N N N N 18.613 28.835 15.931 -5.756 -2.511 0.938 H41 REA 27
REA H42 H42 H 0 1 N N N N N N 19.335 27.730 14.713 -5.322 -2.531 -0.786 H42 REA 28
REA H7 H7 H 0 1 N N N N N N 23.276 28.162 18.329 -2.337 1.230 1.191 H7 REA 29
REA H8 H8 H 0 1 N N N N N N 20.840 26.645 19.217 -1.482 -1.100 -0.622 H8 REA 30
REA H10 H10 H 0 1 N N N N N N 21.127 25.256 20.977 0.903 -1.241 -0.842 H10 REA 31
REA H11 H11 H 0 1 N N N N N N 23.902 25.189 22.440 2.425 0.985 0.706 H11 REA 32
REA H12 H12 H 0 1 N N N N N N 21.216 23.774 22.743 3.286 -1.383 -1.063 H12 REA 33
REA H14 H14 H 0 1 N N N N N N 21.127 22.292 24.490 5.667 -1.451 -1.376 H14 REA 34
REA H161 H161 H 0 0 N N N N N N 22.984 30.265 18.604 -5.802 1.316 1.303 H161 REA 35
REA H162 H162 H 0 0 N N N N N N 22.618 31.709 17.601 -4.426 2.415 1.044 H162 REA 36
REA H163 H163 H 0 0 N N N N N N 21.302 30.887 18.506 -5.911 2.605 0.081 H163 REA 37
REA H171 H171 H 0 0 N N N N N N 24.033 29.127 16.595 -4.598 2.394 -2.077 H171 REA 38
REA H172 H172 H 0 0 N N N N N N 23.095 28.989 15.069 -3.146 2.335 -1.050 H172 REA 39
REA H173 H173 H 0 0 N N N N N N 23.683 30.595 15.620 -3.439 1.054 -2.251 H173 REA 40
REA H181 H181 H 0 0 N N N N N N 20.397 25.979 17.736 -3.448 -3.187 1.201 H181 REA 41
REA H182 H182 H 0 0 N N N N N N 18.761 26.584 17.308 -2.145 -2.194 0.503 H182 REA 42
REA H183 H183 H 0 0 N N N N N N 19.786 25.804 16.056 -2.831 -1.775 2.092 H183 REA 43
REA H191 H191 H 0 0 N N N N N N 24.647 26.327 21.238 0.171 1.159 2.216 H191 REA 44
REA H192 H192 H 0 0 N N N N N N 24.702 26.559 19.458 0.993 2.008 0.885 H192 REA 45
REA H193 H193 H 0 0 N N N N N N 24.252 27.929 20.529 -0.774 2.125 1.058 H193 REA 46
REA H201 H201 H 0 0 N N N N N N 24.620 23.168 25.369 5.026 0.871 1.762 H201 REA 47
REA H202 H202 H 0 0 N N N N N N 24.965 23.516 23.641 5.707 1.771 0.386 H202 REA 48
REA H203 H203 H 0 0 N N N N N N 24.360 24.822 24.717 3.952 1.795 0.685 H203 REA 49
REA HO2 HO2 H 0 1 N N N N N N 22.244 21.180 27.713 9.006 -0.469 -0.490 HO2 REA 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
REA C1 C2 SING N N 1
REA C1 C6 SING N N 2
REA C1 C16 SING N N 3
REA C1 C17 SING N N 4
REA C2 C3 SING N N 5
REA C2 H21 SING N N 6
REA C2 H22 SING N N 7
REA C3 C4 SING N N 8
REA C3 H31 SING N N 9
REA C3 H32 SING N N 10
REA C4 C5 SING N N 11
REA C4 H41 SING N N 12
REA C4 H42 SING N N 13
REA C5 C6 DOUB N N 14
REA C5 C18 SING N N 15
REA C6 C7 SING N N 16
REA C7 C8 DOUB N E 17
REA C7 H7 SING N N 18
REA C8 C9 SING N N 19
REA C8 H8 SING N N 20
REA C9 C10 DOUB N E 21
REA C9 C19 SING N N 22
REA C10 C11 SING N N 23
REA C10 H10 SING N N 24
REA C11 C12 DOUB N E 25
REA C11 H11 SING N N 26
REA C12 C13 SING N N 27
REA C12 H12 SING N N 28
REA C13 C14 DOUB N E 29
REA C13 C20 SING N N 30
REA C14 C15 SING N N 31
REA C14 H14 SING N N 32
REA C15 O1 DOUB N N 33
REA C15 O2 SING N N 34
REA C16 H161 SING N N 35
REA C16 H162 SING N N 36
REA C16 H163 SING N N 37
REA C17 H171 SING N N 38
REA C17 H172 SING N N 39
REA C17 H173 SING N N 40
REA C18 H181 SING N N 41
REA C18 H182 SING N N 42
REA C18 H183 SING N N 43
REA C19 H191 SING N N 44
REA C19 H192 SING N N 45
REA C19 H193 SING N N 46
REA C20 H201 SING N N 47
REA C20 H202 SING N N 48
REA C20 H203 SING N N 49
REA O2 HO2 SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
REA SMILES ACDLabs 12.01 C1(CCCC(=C1\C=C\C(=C\C=C\C(=C\C(=O)O)C)C)C)(C)C
REA InChI InChI 1.03 InChI=1S/C20H28O2/c1-15(8-6-9-16(2)14-19(21)22)11-12-18-17(3)10-7-13-20(18,4)5/h6,8-9,11-12,14H,7,10,13H2,1-5H3,(H,21,22)/b9-6+,12-11+,15-8+,16-14+
REA InChIKey InChI 1.03 SHGAZHPCJJPHSC-YCNIQYBTSA-N
REA SMILES_CANONICAL CACTVS 3.385 CC1=C(\C=C\C(C)=C\C=C\C(C)=C\C(O)=O)C(C)(C)CCC1
REA SMILES CACTVS 3.385 CC1=C(C=CC(C)=CC=CC(C)=CC(O)=O)C(C)(C)CCC1
REA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/C(=O)O)/C)/C
REA SMILES "OpenEye OEToolkits" 1.7.6 CC1=C(C(CCC1)(C)C)C=CC(=CC=CC(=CC(=O)O)C)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
REA "SYSTEMATIC NAME" ACDLabs 12.01 "retinoic acid"
REA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,4,6,8-tetraenoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
REA 'Create component' 1999-07-08 RCSB
REA 'Modify descriptor' 2011-06-04 RCSB
REA 'Other modification' 2016-10-18 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id REA
_pdbe_chem_comp_drugbank_details.drugbank_id DB00755
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Tretinoin
_pdbe_chem_comp_drugbank_details.description
'Tretinoin, also known as all-trans-retinoic acid (ATRA), is a naturally occurring derivative of [vitamin A] (retinol).[A257474] It is an oxidation product in the physiological pathway of vitamin A metabolism.[A257689] In human circulation, tretinoin is normally found at very low concentrations, approximately 4 to 14 nmol/L.[A257689] Tretinoin exhibits anti-inflammatory, antineoplastic, antioxidant, and free radical-scavenging activities.[A257689] It has been used in dermatology for many years to treat various skin conditions ranging from acne to wrinkles [A257474,A258185] and activates nuclear receptors to regulate epithelial cell growth and differentiation.[A257474,A257629,A257609] Tretinoin is given orally to treat acute promyelocytic leukemia [L45349] and topically to treat skin conditions such as acne.[L45389,L34869,L45384]'
_pdbe_chem_comp_drugbank_details.cas_number 302-79-4
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'The exact mechanism of action of tretinoin in skin conditions and acute promyelocytic leukemia (APL) has not been fully elucidated; however, several proposed mechanisms exist. Tretinoin is believed to exert its pharmacological actions by binding to and activating two types of nuclear receptors - retinoic acid receptors (RARs) alpha, beta, and gamma and retinoid X receptors (RXRs). In the human skin, RARs (especially RAR-alpha) form heterodimers with RXR to act as inducible transcription regulators of genes involved in cell differentiation by binding to retinoic acid response elements.[A257724,A258185] Tretinoin binds to RXRs to promote epidermal proliferation. It also blocks the actions of inflammatory mediators, enhancing procollagen production and collagen type I and III formations.[A257474,A257629,A257609,A257699] Some animal and human studies suggest that tretinoin induces the expression of transforming growth factor beta (TGF-β), which stimulates the transcription of several types of collagen messenger RNA. Collagen formation curtails further solar UV-induced skin damage and aging processes.[A257699]  Acne is associated with abnormal follicular formation from excessive keratinization of epithelial cells. Tretinoin promotes cornified cell detachment and enhances keratinocyte shedding. It also stimulates mitotic activity and loosely-adherent corneocyte turnover to expel comedo contents, reducing microcomedo precursor lesions of acne vulgaris.[A257474,L34869] Tretinoin may reduce epidermal melanin and pigmentation by increasing keratinocyte turnover and reducing tyrosinase activity.[A257609,A258180]  RAR-alpha and -beta have also been implicated in APL.[A257724] APL is characterized by a t(15;17) chromosomal translocation, which fuses the promyelocytic myeloid leukemia (PML) gene with the RAR-alpha gene.[A257689,A257694] The resulting PML-RAR-alpha fusion protein plays a role in the pathogenesis of APL by aberrating promyelocyte differentiation. The PML-RAR-alpha fusion protein is found to be predominant in leukemic cells, exerting a dominant negative effect on RAR, RXR and PML function.[A257689] Tretinoin induces terminal differentiation in hemopoietic precursor cell lines and APL cells.[A257694] Tretinoin is believed to promote caspase-mediated cleavage and proteasome-dependent degradation to cause apoptosis and degradation of the PML-RAR-alpha fusion protein.[A257474] It may also convert the fusion protein from a transcription repressor to an activator.[A257474]'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
REA '(all-E)-3,7-Dimethyl-9-(2,6,6-trimethyl-1-cyclohexen-1-yl)-2,4,6,8-nonatetraenoic acid' DrugBank ?
REA '3,7-Dimethyl-9-(2,6,6-trimethyl-1-cyclohexene-1-yl)-2,4,6,8-nonatetraenoic acid (ECL)' DrugBank ?
REA 'all trans Retinoic acid' DrugBank ?
REA 'all trans-Retinoic acid' DrugBank ?
REA 'all-(E)-Retinoic acid' DrugBank ?
REA 'all-trans-beta-Retinoic acid' DrugBank ?
REA 'all-trans-Retinoic acid' DrugBank ?
REA all-trans-Tretinoin DrugBank ?
REA 'all-trans-Vitamin A acid' DrugBank ?
REA 'all-trans-Vitamin A1 acid' DrugBank ?
REA ATRA DrugBank ?
REA 'beta-Retinoic acid' DrugBank ?
REA 'Retinoic acid' DrugBank ?
REA 'Retionic acid' DrugBank ?
REA 'trans-Retinoic acid' DrugBank ?
REA 'Tretin M' DrugBank ?
REA Tretinoin DrugBank ?
REA Tretinoinum DrugBank ?
REA 'Vitamin A acid' DrugBank ?
REA Aberel DrugBank 'International brand'
REA Aberela DrugBank 'International brand'
REA Airol DrugBank 'International brand'
REA Dermairol DrugBank 'International brand'
REA Eudyna DrugBank 'International brand'
REA 'Kétrel' DrugBank 'International brand'
REA Sotret DrugBank 'International brand'
REA Stieva-A DrugBank 'International brand'
REA Vitinoin DrugBank 'International brand'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
REA DB00755 'Retinoic acid receptor alpha' Humans P10276 yes 1
REA DB00755 'Retinoic acid receptor beta' Humans P10826 yes 2
REA DB00755 'Retinoic acid receptor gamma' Humans P13631 yes 3
REA DB00755 'Retinoic acid receptor RXR-beta' Humans P28702 yes 4
REA DB00755 'Retinoic acid receptor RXR-gamma' Humans P48443 yes 5
REA DB00755 'Retinoic acid receptor RXR-alpha' Humans P19793 unknown 6
REA DB00755 'Cellular retinoic acid-binding protein 1' Humans P29762 unknown 7
REA DB00755 'Retinoic acid receptor responder protein 1' Humans P49788 unknown 8
REA DB00755 'Aldehyde dehydrogenase 1A1' Humans P00352 unknown 9
REA DB00755 'Retinal dehydrogenase 2' Humans O94788 unknown 10
REA DB00755 'Retinoic acid-induced protein 3' Humans Q8NFJ5 unknown 11
REA DB00755 Lipocalin-1 Humans P31025 unknown 12
REA DB00755 'Odorant-binding protein 2a' Humans Q9NY56 unknown 13
REA DB00755 'Retinol-binding protein 4' Humans P02753 unknown 14
REA DB00755 '[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial' Humans Q16654 unknown 15
REA DB00755 'Carcinoembryonic antigen' Humans Q14081 unknown 16
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
REA C1 C 4.500 -5.340 1
REA C2 C 4.500 -6.840 2
REA C3 C 5.799 -7.590 3
REA C4 C 7.098 -6.840 4
REA C5 C 7.098 -5.340 5
REA C6 C 5.799 -4.590 6
REA C7 C 5.799 -3.090 7
REA C8 C 7.098 -2.340 8
REA C9 C 7.098 -0.840 9
REA C10 C 8.397 -0.090 10
REA C11 C 8.397 1.410 11
REA C12 C 9.696 2.160 12
REA C13 C 9.696 3.660 13
REA C14 C 10.995 4.410 14
REA C15 C 10.995 5.910 15
REA C16 C 3.000 -5.340 16
REA C17 C 3.750 -4.041 17
REA C18 C 8.397 -4.590 18
REA C19 C 5.799 -0.090 19
REA C20 C 8.397 4.410 20
REA O1 O 12.294 6.660 21
REA O2 O 9.696 6.660 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
REA C1 C2 SINGLE NONE 1
REA C1 C6 SINGLE NONE 2
REA C1 C16 SINGLE NONE 3
REA C1 C17 SINGLE NONE 4
REA C2 C3 SINGLE NONE 5
REA C3 C4 SINGLE NONE 6
REA C4 C5 SINGLE NONE 7
REA C5 C6 DOUBLE NONE 8
REA C5 C18 SINGLE NONE 9
REA C6 C7 SINGLE ENDUPRIGHT 10
REA C7 C8 DOUBLE NONE 11
REA C8 C9 SINGLE ENDUPRIGHT 12
REA C9 C10 DOUBLE NONE 13
REA C9 C19 SINGLE ENDUPRIGHT 14
REA C10 C11 SINGLE ENDUPRIGHT 15
REA C11 C12 DOUBLE NONE 16
REA C12 C13 SINGLE ENDUPRIGHT 17
REA C13 C14 DOUBLE NONE 18
REA C13 C20 SINGLE ENDUPRIGHT 19
REA C14 C15 SINGLE ENDUPRIGHT 20
REA C15 O1 DOUBLE NONE 21
REA C15 O2 SINGLE NONE 22
#
_pdbe_chem_comp_substructure.comp_id REA
_pdbe_chem_comp_substructure.substructure_name MurckoScaffold
_pdbe_chem_comp_substructure.id S1
_pdbe_chem_comp_substructure.substructure_type scaffold
_pdbe_chem_comp_substructure.substructure_smiles C1=CCCCC1
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C6H10/c1-2-4-6-5-3-1/h1-2H,3-6H2
_pdbe_chem_comp_substructure.substructure_inchikeys HGCIXCUEYOPUTN-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
REA C1 S1 1
REA C2 S1 1
REA C3 S1 1
REA C4 S1 1
REA C5 S1 1
REA C6 S1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id REA
_pdbe_chem_comp_rdkit_properties.exactmw 300.209
_pdbe_chem_comp_rdkit_properties.amw 300.442
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 50
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.450
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 173.601
_pdbe_chem_comp_rdkit_properties.tpsa 37.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.603
_pdbe_chem_comp_rdkit_properties.CrippenMR 93.762
_pdbe_chem_comp_rdkit_properties.chi0v 10.816
_pdbe_chem_comp_rdkit_properties.chi1v 5.408
_pdbe_chem_comp_rdkit_properties.chi2v 1.977
_pdbe_chem_comp_rdkit_properties.chi3v 1.977
_pdbe_chem_comp_rdkit_properties.chi4v 1.102
_pdbe_chem_comp_rdkit_properties.chi0n 38.816
_pdbe_chem_comp_rdkit_properties.chi1n 19.316
_pdbe_chem_comp_rdkit_properties.chi2n 1.977
_pdbe_chem_comp_rdkit_properties.chi3n 1.977
_pdbe_chem_comp_rdkit_properties.chi4n 1.102
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.830
_pdbe_chem_comp_rdkit_properties.kappa1 3.194
_pdbe_chem_comp_rdkit_properties.kappa2 7.976
_pdbe_chem_comp_rdkit_properties.kappa3 5.885
_pdbe_chem_comp_rdkit_properties.Phi 1.158
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
REA UniChem DrugBank DB00755
REA UniChem 'Guide to Pharmacology' 2644
REA UniChem 'PubChem DOTF' 12014646
REA UniChem 'KEGG LIGAND' C00777
REA UniChem ChEBI 15367
REA UniChem NIH SAM002264647
REA UniChem ZINC ZINC000012358651
REA UniChem eMolecules 1934590
REA UniChem atlas '9-cis retinoic-acid'
REA UniChem atlas 'all-trans retinoic acid'
REA UniChem atlas 'retinoic acid'
REA UniChem atlas tretinoin
REA UniChem fdasrs 5688UTC01R
REA UniChem PharmGKB PA164746900
REA UniChem HMDB HMDB0001852
REA UniChem Selleck Tretinoin(Aberela)
REA UniChem NMRShiftDB 60021090
REA UniChem LINCS LSM-42854
REA UniChem ACTor 4759-48-2
REA UniChem Nikkaji J494.243D
REA UniChem Nikkaji J528.606I
REA UniChem Nikkaji J970.183D
REA UniChem BindingDb 31883
REA UniChem BindingDb 323588
REA UniChem LipidMaps LMPR01090019
REA UniChem DrugCentral 2722
REA UniChem MetaboLights MTBLC15367
REA UniChem BRENDA 12679
REA UniChem BRENDA 193381
REA UniChem BRENDA 21231
REA UniChem BRENDA 2354
REA UniChem BRENDA 260365
REA UniChem BRENDA 5126
REA UniChem BRENDA 6481
REA UniChem ChemicalBook CB6222631
REA UniChem DailyMed TRETINOIN
REA UniChem ClinicalTrials ABEREL
REA UniChem ClinicalTrials ALTRENO
REA UniChem ClinicalTrials AVITA
REA UniChem ClinicalTrials EUDYNA
REA UniChem ClinicalTrials NSC-122758
REA UniChem ClinicalTrials RENOVA
REA UniChem ClinicalTrials 'RETIN A'
REA UniChem ClinicalTrials RETIN-A
REA UniChem ClinicalTrials 'RETINOIC ACID'
REA UniChem ClinicalTrials TRETINOIN
REA UniChem ClinicalTrials VESANOID
REA UniChem rxnorm ACTICIN
REA UniChem rxnorm ALTRENO
REA UniChem rxnorm ATRALIN
REA UniChem rxnorm AVITA
REA UniChem rxnorm RENOVA
REA UniChem rxnorm RETIN-A
REA UniChem rxnorm TRETINOIN
REA UniChem rxnorm 'TRETINOIN MICROSPHERE'
REA UniChem MedChemExpress HY-14649
REA UniChem 'Probes And Drugs' PD001430
REA UniChem CCDC VITAAC
REA UniChem 'EPA CompTox Dashboard' DTXSID7021239
REA UniChem SureChEMBL SCHEMBL19091395
REA UniChem SureChEMBL SCHEMBL3145
REA UniChem 'PubChem TPHARMA' 14825303
REA UniChem 'PubChem TPHARMA' 14849563
REA UniChem PubChem 444795
REA UniChem ACTor 187175-63-9
REA UniChem ACTor 302-79-4
REA UniChem Nikkaji J1.313.469C
REA UniChem Nikkaji J1.518K
REA UniChem Nikkaji J2.378.058E
REA UniChem Nikkaji J623.910B
REA UniChem Nikkaji J646.157C
REA UniChem Nikkaji J646.158A
REA UniChem Nikkaji J690.379G
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
REA C1 -4.020 -0.072 0.786 ETKDGv3 1
REA C2 -5.265 0.690 0.259 ETKDGv3 2
REA C3 -5.670 0.216 -1.132 ETKDGv3 3
REA C4 -4.530 0.466 -2.113 ETKDGv3 4
REA C5 -3.194 -0.042 -1.615 ETKDGv3 5
REA C6 -2.928 -0.192 -0.287 ETKDGv3 6
REA C7 -1.589 -0.654 0.151 ETKDGv3 7
REA C8 -0.539 0.175 0.154 ETKDGv3 8
REA C9 0.815 -0.234 0.599 ETKDGv3 9
REA C10 1.875 0.397 0.056 ETKDGv3 10
REA C11 3.284 0.050 0.342 ETKDGv3 11
REA C12 4.283 0.778 -0.171 ETKDGv3 12
REA C13 5.717 0.482 0.083 ETKDGv3 13
REA C14 6.589 1.510 0.029 ETKDGv3 14
REA C15 8.033 1.439 0.336 ETKDGv3 15
REA C16 -3.479 0.704 2.009 ETKDGv3 16
REA C17 -4.430 -1.490 1.248 ETKDGv3 17
REA C18 -2.128 -0.284 -2.658 ETKDGv3 18
REA C19 0.985 -1.332 1.624 ETKDGv3 19
REA C20 6.159 -0.934 0.368 ETKDGv3 20
REA O1 8.777 2.397 -0.007 ETKDGv3 21
REA O2 8.583 0.370 1.038 ETKDGv3 22
REA H21 -5.050 1.782 0.204 ETKDGv3 23
REA H22 -6.125 0.565 0.953 ETKDGv3 24
REA H31 -5.935 -0.862 -1.120 ETKDGv3 25
REA H32 -6.569 0.779 -1.465 ETKDGv3 26
REA H41 -4.441 1.557 -2.302 ETKDGv3 27
REA H42 -4.790 -0.025 -3.076 ETKDGv3 28
REA H7 -1.494 -1.673 0.501 ETKDGv3 29
REA H8 -0.673 1.182 -0.227 ETKDGv3 30
REA H10 1.694 1.192 -0.661 ETKDGv3 31
REA H11 3.511 -0.794 0.979 ETKDGv3 32
REA H12 4.040 1.657 -0.759 ETKDGv3 33
REA H14 6.217 2.491 -0.249 ETKDGv3 34
REA H161 -2.651 0.154 2.505 ETKDGv3 35
REA H162 -4.282 0.856 2.763 ETKDGv3 36
REA H163 -3.096 1.701 1.698 ETKDGv3 37
REA H171 -3.584 -2.002 1.754 ETKDGv3 38
REA H172 -5.275 -1.442 1.969 ETKDGv3 39
REA H173 -4.735 -2.120 0.387 ETKDGv3 40
REA H181 -1.288 0.428 -2.524 ETKDGv3 41
REA H182 -1.749 -1.325 -2.578 ETKDGv3 42
REA H183 -2.525 -0.143 -3.685 ETKDGv3 43
REA H191 1.731 -1.039 2.392 ETKDGv3 44
REA H192 0.042 -1.523 2.175 ETKDGv3 45
REA H193 1.311 -2.267 1.122 ETKDGv3 46
REA H201 7.081 -1.177 -0.201 ETKDGv3 47
REA H202 6.336 -1.064 1.456 ETKDGv3 48
REA H203 5.398 -1.670 0.036 ETKDGv3 49
REA HO2 9.572 0.344 1.256 ETKDGv3 50
#