data_RA1
#
_chem_comp.id RA1
_chem_comp.name 2-chloranyl-4-nitro-~{N}-(4-sulfamoylphenyl)benzamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H10 Cl N3 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-05-10
_chem_comp.pdbx_modified_date 2018-01-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 355.754
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RA1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5NXG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RA1 CL CL1 CL 0 0 N N N N N N -1.909 9.650 14.405 2.568 -2.602 0.239 CL RA1 1
RA1 C10 C1 C 0 1 Y N N N N N -2.197 9.629 12.693 3.178 -0.983 0.100 C10 RA1 2
RA1 C9 C2 C 0 1 Y N N N N N -1.402 10.521 11.945 4.538 -0.760 0.022 C9 RA1 3
RA1 C8 C3 C 0 1 Y N N N N N -1.582 10.572 10.552 5.025 0.530 -0.089 C8 RA1 4
RA1 N2 N1 N 1 1 N N N N N N -0.745 11.480 9.744 6.485 0.762 -0.173 N2 RA1 5
RA1 O4 O1 O -1 1 N N N N N N -0.340 11.091 8.675 6.917 1.896 -0.271 O4 RA1 6
RA1 O3 O2 O 0 1 N N N N N N -0.475 12.579 10.152 7.254 -0.182 -0.144 O3 RA1 7
RA1 C7 C4 C 0 1 Y N N N N N -2.528 9.794 9.861 4.154 1.605 -0.123 C7 RA1 8
RA1 C6 C5 C 0 1 Y N N N N N -3.321 8.938 10.593 2.793 1.397 -0.045 C6 RA1 9
RA1 C5 C6 C 0 1 Y N N N N N -3.150 8.858 11.983 2.293 0.098 0.062 C5 RA1 10
RA1 C4 C7 C 0 1 N N N N N N -4.077 7.924 12.667 0.836 -0.132 0.145 C4 RA1 11
RA1 O2 O3 O 0 1 N N N N N N -5.308 8.089 12.652 0.403 -1.264 0.237 O2 RA1 12
RA1 N1 N2 N 0 1 N N N N N N -3.529 6.942 13.390 -0.014 0.914 0.118 N1 RA1 13
RA1 C3 C8 C 0 1 Y N N N N N -4.171 5.986 14.189 -1.395 0.692 0.085 C3 RA1 14
RA1 C2 C9 C 0 1 Y N N N N N -5.535 5.923 14.499 -2.257 1.579 0.717 C2 RA1 15
RA1 C1 C10 C 0 1 Y N N N N N -6.011 4.897 15.286 -3.620 1.357 0.683 C1 RA1 16
RA1 C11 C11 C 0 1 Y N N N N N -3.294 4.987 14.675 -1.906 -0.412 -0.584 C11 RA1 17
RA1 C12 C12 C 0 1 Y N N N N N -3.804 3.943 15.426 -3.270 -0.627 -0.615 C12 RA1 18
RA1 C C13 C 0 1 Y N N N N N -5.194 3.869 15.763 -4.126 0.254 0.021 C RA1 19
RA1 S S1 S 0 1 N N N N N N -5.832 2.582 16.668 -5.865 -0.026 -0.019 S RA1 20
RA1 O O4 O 0 1 N N N N N N -5.298 2.695 17.998 -6.042 -1.418 -0.245 O RA1 21
RA1 O1 O5 O 0 1 N N N N N N -7.276 2.684 16.534 -6.407 0.655 1.104 O1 RA1 22
RA1 N N3 N 0 1 N N N N N N -5.268 1.237 16.027 -6.454 0.744 -1.362 N RA1 23
RA1 H1 H1 H 0 1 N N N N N N -0.671 11.151 12.431 5.223 -1.594 0.048 H1 RA1 24
RA1 H2 H2 H 0 1 N N N N N N -2.630 9.866 8.788 4.542 2.609 -0.209 H2 RA1 25
RA1 H3 H3 H 0 1 N N N N N N -4.068 8.333 10.101 2.115 2.238 -0.071 H3 RA1 26
RA1 H4 H4 H 0 1 N N N N N N -2.531 6.882 13.356 0.332 1.820 0.122 H4 RA1 27
RA1 H5 H5 H 0 1 N N N N N N -6.212 6.676 14.123 -1.862 2.440 1.235 H5 RA1 28
RA1 H6 H6 H 0 1 N N N N N N -7.059 4.887 15.545 -4.291 2.046 1.175 H6 RA1 29
RA1 H7 H7 H 0 1 N N N N N N -2.237 5.039 14.462 -1.239 -1.100 -1.081 H7 RA1 30
RA1 H8 H8 H 0 1 N N N N N N -3.137 3.165 15.767 -3.669 -1.486 -1.135 H8 RA1 31
RA1 H9 H9 H 0 1 N N N N N N -5.622 0.451 16.534 -7.237 0.395 -1.816 H9 RA1 32
RA1 H10 H10 H 0 1 N N N N N N -5.558 1.176 15.072 -6.017 1.543 -1.694 H10 RA1 33
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RA1 O4 N2 SING N N 1
RA1 N2 O3 DOUB N N 2
RA1 N2 C8 SING N N 3
RA1 C7 C8 DOUB Y N 4
RA1 C7 C6 SING Y N 5
RA1 C8 C9 SING Y N 6
RA1 C6 C5 DOUB Y N 7
RA1 C9 C10 DOUB Y N 8
RA1 C5 C4 SING N N 9
RA1 C5 C10 SING Y N 10
RA1 O2 C4 DOUB N N 11
RA1 C4 N1 SING N N 12
RA1 C10 CL SING N N 13
RA1 N1 C3 SING N N 14
RA1 C3 C2 DOUB Y N 15
RA1 C3 C11 SING Y N 16
RA1 C2 C1 SING Y N 17
RA1 C11 C12 DOUB Y N 18
RA1 C1 C DOUB Y N 19
RA1 C12 C SING Y N 20
RA1 C S SING N N 21
RA1 N S SING N N 22
RA1 O1 S DOUB N N 23
RA1 S O DOUB N N 24
RA1 C9 H1 SING N N 25
RA1 C7 H2 SING N N 26
RA1 C6 H3 SING N N 27
RA1 N1 H4 SING N N 28
RA1 C2 H5 SING N N 29
RA1 C1 H6 SING N N 30
RA1 C11 H7 SING N N 31
RA1 C12 H8 SING N N 32
RA1 N H9 SING N N 33
RA1 N H10 SING N N 34
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RA1 InChI InChI 1.03 InChI=1S/C13H10ClN3O5S/c14-12-7-9(17(19)20)3-6-11(12)13(18)16-8-1-4-10(5-2-8)23(15,21)22/h1-7H,(H,16,18)(H2,15,21,22)
RA1 InChIKey InChI 1.03 RYNWTIXQTVFOEO-UHFFFAOYSA-N
RA1 SMILES_CANONICAL CACTVS 3.385 N[S](=O)(=O)c1ccc(NC(=O)c2ccc(cc2Cl)[N+]([O-])=O)cc1
RA1 SMILES CACTVS 3.385 N[S](=O)(=O)c1ccc(NC(=O)c2ccc(cc2Cl)[N+]([O-])=O)cc1
RA1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1cc(ccc1NC(=O)c2ccc(cc2Cl)[N+](=O)[O-])S(=O)(=O)N
RA1 SMILES "OpenEye OEToolkits" 2.0.6 c1cc(ccc1NC(=O)c2ccc(cc2Cl)[N+](=O)[O-])S(=O)(=O)N
#
_pdbx_chem_comp_identifier.comp_id RA1
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier 2-chloranyl-4-nitro-~{N}-(4-sulfamoylphenyl)benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RA1 'Create component' 2017-05-10 EBI
RA1 'Initial release' 2018-01-17 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RA1 CL Cl 3.000 -2.482 1
RA1 C10 C 4.299 -3.232 2
RA1 C9 C 4.299 -4.732 3
RA1 C8 C 5.598 -5.482 4
RA1 N2 N 5.598 -6.982 5
RA1 O4 O 6.897 -7.732 6
RA1 O3 O 4.299 -7.732 7
RA1 C7 C 6.897 -4.732 8
RA1 C6 C 6.897 -3.232 9
RA1 C5 C 5.598 -2.482 10
RA1 C4 C 5.598 -0.983 11
RA1 O2 O 4.299 -0.233 12
RA1 N1 N 6.897 -0.233 13
RA1 C3 C 6.897 1.268 14
RA1 C2 C 5.598 2.018 15
RA1 C1 C 5.598 3.518 16
RA1 C11 C 8.196 2.018 17
RA1 C12 C 8.196 3.518 18
RA1 C C 6.897 4.268 19
RA1 S S 6.897 5.768 20
RA1 O O 6.897 7.268 21
RA1 O1 O 5.397 5.768 22
RA1 N N 8.397 5.768 23
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RA1 O4 N2 SINGLE NONE 1
RA1 N2 O3 DOUBLE NONE 2
RA1 N2 C8 SINGLE NONE 3
RA1 C7 C8 DOUBLE NONE 4
RA1 C7 C6 SINGLE NONE 5
RA1 C8 C9 SINGLE NONE 6
RA1 C6 C5 DOUBLE NONE 7
RA1 C9 C10 DOUBLE NONE 8
RA1 C5 C4 SINGLE NONE 9
RA1 C5 C10 SINGLE NONE 10
RA1 O2 C4 DOUBLE NONE 11
RA1 C4 N1 SINGLE NONE 12
RA1 C10 CL SINGLE NONE 13
RA1 N1 C3 SINGLE NONE 14
RA1 C3 C2 DOUBLE NONE 15
RA1 C3 C11 SINGLE NONE 16
RA1 C2 C1 SINGLE NONE 17
RA1 C11 C12 DOUBLE NONE 18
RA1 C1 C DOUBLE NONE 19
RA1 C12 C SINGLE NONE 20
RA1 C S SINGLE NONE 21
RA1 N S SINGLE NONE 22
RA1 O1 S DOUBLE NONE 23
RA1 S O DOUBLE NONE 24
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RA1 MurckoScaffold S1 scaffold O=C(Nc1ccccc1)c1ccccc1 InChI=1S/C13H11NO/c15-13(11-7-3-1-4-8-11)14-12-9-5-2-6-10-12/h1-10H,(H,14,15) ZVSKZLHKADLHSD-UHFFFAOYSA-N
RA1 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
RA1 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RA1 C10 S1 1
RA1 C9 S1 1
RA1 C8 S1 1
RA1 C7 S1 1
RA1 C6 S1 1
RA1 C5 S1 1
RA1 C4 S1 1
RA1 O2 S1 1
RA1 N1 S1 1
RA1 C3 S1 1
RA1 C2 S1 1
RA1 C1 S1 1
RA1 C11 S1 1
RA1 C12 S1 1
RA1 C S1 1
RA1 N1 F1 1
RA1 C4 F1 1
RA1 O2 F1 1
RA1 C5 F1 1
RA1 C10 F2 1
RA1 C9 F2 1
RA1 C8 F2 1
RA1 C7 F2 1
RA1 C6 F2 1
RA1 C5 F2 1
RA1 C3 F2 2
RA1 C2 F2 2
RA1 C1 F2 2
RA1 C F2 2
RA1 C12 F2 2
RA1 C11 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id RA1
_pdbe_chem_comp_rdkit_properties.exactmw 355.003
_pdbe_chem_comp_rdkit_properties.amw 355.759
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 23
_pdbe_chem_comp_rdkit_properties.NumAtoms 33
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 149.846
_pdbe_chem_comp_rdkit_properties.tpsa 132.400
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.224
_pdbe_chem_comp_rdkit_properties.CrippenMR 82.531
_pdbe_chem_comp_rdkit_properties.chi0v 12.242
_pdbe_chem_comp_rdkit_properties.chi1v 7.217
_pdbe_chem_comp_rdkit_properties.chi2v 3.214
_pdbe_chem_comp_rdkit_properties.chi3v 3.214
_pdbe_chem_comp_rdkit_properties.chi4v 1.827
_pdbe_chem_comp_rdkit_properties.chi0n 20.669
_pdbe_chem_comp_rdkit_properties.chi1n 10.241
_pdbe_chem_comp_rdkit_properties.chi2n 2.210
_pdbe_chem_comp_rdkit_properties.chi3n 2.210
_pdbe_chem_comp_rdkit_properties.chi4n 1.250
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.490
_pdbe_chem_comp_rdkit_properties.kappa1 7.863
_pdbe_chem_comp_rdkit_properties.kappa2 6.325
_pdbe_chem_comp_rdkit_properties.kappa3 4.034
_pdbe_chem_comp_rdkit_properties.Phi 2.162
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RA1 UniChem ZINC ZINC000001187997
RA1 UniChem eMolecules 1229643
RA1 UniChem PubChem 1350235
RA1 UniChem Mcule MCULE-1834132491
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RA1 CL -3.108 1.700 2.302 ETKDGv3 1
RA1 C10 -3.586 0.791 0.871 ETKDGv3 2
RA1 C9 -4.882 0.484 0.713 ETKDGv3 3
RA1 C8 -5.336 -0.324 -0.447 ETKDGv3 4
RA1 N2 -6.729 -0.646 -0.608 ETKDGv3 5
RA1 O4 -7.160 -1.398 -1.677 ETKDGv3 6
RA1 O3 -7.570 -0.246 0.223 ETKDGv3 7
RA1 C7 -4.424 -0.751 -1.338 ETKDGv3 8
RA1 C6 -2.997 -0.414 -1.172 ETKDGv3 9
RA1 C5 -2.580 0.320 -0.125 ETKDGv3 10
RA1 C4 -1.150 0.679 0.010 ETKDGv3 11
RA1 O2 -0.842 1.854 0.348 ETKDGv3 12
RA1 N1 -0.120 -0.285 -0.275 ETKDGv3 13
RA1 C3 1.282 -0.055 -0.059 ETKDGv3 14
RA1 C2 1.731 0.620 1.016 ETKDGv3 15
RA1 C1 3.182 0.809 1.227 ETKDGv3 16
RA1 C11 2.262 -0.647 -1.000 ETKDGv3 17
RA1 C12 3.576 -0.479 -0.807 ETKDGv3 18
RA1 C 4.064 0.295 0.357 ETKDGv3 19
RA1 S 5.793 0.503 0.618 ETKDGv3 20
RA1 O 6.064 1.887 1.138 ETKDGv3 21
RA1 O1 6.529 0.324 -0.680 ETKDGv3 22
RA1 N 6.353 -0.666 1.761 ETKDGv3 23
RA1 H1 -5.603 0.820 1.448 ETKDGv3 24
RA1 H2 -4.718 -1.341 -2.196 ETKDGv3 25
RA1 H3 -2.302 -0.745 -1.934 ETKDGv3 26
RA1 H4 -0.388 -1.189 -0.725 ETKDGv3 27
RA1 H5 1.047 1.007 1.759 ETKDGv3 28
RA1 H6 3.521 1.359 2.096 ETKDGv3 29
RA1 H7 1.915 -1.216 -1.853 ETKDGv3 30
RA1 H8 4.280 -0.917 -1.503 ETKDGv3 31
RA1 H9 5.798 -0.528 2.635 ETKDGv3 32
RA1 H10 6.096 -1.606 1.386 ETKDGv3 33
#