data_R2A
#
_chem_comp.id R2A
_chem_comp.name
"(2-{[3-(4-{2-[(3-{[3-(carboxymethyl)-5-methyl-1-benzofuran-2-yl]ethynyl}benzene-1-carbonyl)amino]ethyl}piperazine-1-carbonyl)phenyl]ethynyl}-5-methyl-1-benzofuran-3-yl)acetic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C46 H39 N3 O8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-01-24
_chem_comp.pdbx_modified_date 2021-01-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 761.817
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code R2A
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6VLH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R2A C10 C1 C 0 1 Y N N N N N 7.020 20.865 -29.426 -7.070 -2.374 -0.098 C10 R2A 1
R2A C13 C2 C 0 1 N N N N N N 6.633 24.135 -30.496 -9.905 -3.071 1.537 C13 R2A 2
R2A C17 C3 C 0 1 Y N N N N N 8.849 21.101 -32.517 -7.642 -5.964 0.061 C17 R2A 3
R2A C20 C4 C 0 1 Y N N N N N 10.312 19.240 -31.893 -6.437 -6.503 -1.932 C20 R2A 4
R2A C21 C5 C 0 1 Y N N N N N 9.668 19.070 -30.666 -6.131 -5.174 -2.140 C21 R2A 5
R2A C22 C6 C 0 1 Y N N N N N 8.619 19.950 -30.404 -6.578 -4.213 -1.243 C22 R2A 6
R2A C24 C7 C 0 1 Y N N N N N 4.472 20.597 -25.281 -6.580 2.486 0.117 C24 R2A 7
R2A C26 C8 C 0 1 N N N N N N 4.051 18.669 -20.730 -4.140 5.530 -1.852 C26 R2A 8
R2A C02 C9 C 0 1 N N N N N N 3.725 19.588 -23.122 -5.968 4.849 -0.366 C02 R2A 9
R2A C03 C10 C 0 1 Y N N N N N 3.712 20.737 -24.139 -6.637 3.831 0.473 C03 R2A 10
R2A C04 C11 C 0 1 Y N N N N N 2.999 21.921 -23.979 -7.329 4.218 1.624 C04 R2A 11
R2A C05 C12 C 0 1 Y N N N N N 3.059 22.928 -24.953 -7.955 3.270 2.409 C05 R2A 12
R2A C06 C13 C 0 1 Y N N N N N 3.819 22.766 -26.091 -7.904 1.934 2.063 C06 R2A 13
R2A C07 C14 C 0 1 Y N N N N N 4.519 21.584 -26.246 -7.220 1.533 0.911 C07 R2A 14
R2A C08 C15 C 0 1 N N N N N N 5.342 21.324 -27.463 -7.167 0.147 0.553 C08 R2A 15
R2A C09 C16 C 0 1 N N N N N N 6.039 21.129 -28.352 -7.123 -0.989 0.260 C09 R2A 16
R2A C11 C17 C 0 1 Y N N N N N 7.131 21.591 -30.638 -7.650 -3.386 0.602 C11 R2A 17
R2A C12 C18 C 0 1 N N N N N N 6.295 22.770 -31.150 -8.449 -3.267 1.874 C12 R2A 18
R2A C16 C19 C 0 1 Y N N N N N 8.233 20.886 -31.267 -7.342 -4.614 -0.132 C16 R2A 19
R2A C18 C20 C 0 1 Y N N N N N 9.920 20.238 -32.803 -7.191 -6.893 -0.835 C18 R2A 20
R2A C19 C21 C 0 1 N N N N N N 10.710 20.336 -34.088 -7.514 -8.351 -0.628 C19 R2A 21
R2A C27 C22 C 0 1 N N N N N N 4.767 18.883 -19.378 -2.709 5.808 -1.381 C27 R2A 22
R2A C29 C23 C 0 1 N N N N N N 4.671 20.305 -17.351 -0.572 4.763 -0.928 C29 R2A 23
R2A C30 C24 C 0 1 N N N N N N 4.025 21.531 -16.622 0.183 3.435 -1.006 C30 R2A 24
R2A C32 C25 C 0 1 N N N N N N 3.140 21.099 -14.156 2.466 2.627 -0.736 C32 R2A 25
R2A C33 C26 C 0 1 Y N N N N N 1.928 20.921 -13.168 3.898 2.857 -0.449 C33 R2A 26
R2A C34 C27 C 0 1 Y N N N N N 2.020 20.064 -12.056 4.792 1.788 -0.462 C34 R2A 27
R2A C35 C28 C 0 1 Y N N N N N 0.945 19.874 -11.165 6.142 2.014 -0.191 C35 R2A 28
R2A C36 C29 C 0 1 N N N N N N 1.080 18.913 -9.957 7.069 0.922 -0.202 C36 R2A 29
R2A C37 C30 C 0 1 N N N N N N 1.263 18.153 -9.048 7.829 0.027 -0.211 C37 R2A 30
R2A C38 C31 C 0 1 Y N N N N N 1.649 17.156 -7.949 8.756 -1.064 -0.223 C38 R2A 31
R2A C39 C32 C 0 1 Y N N N N N 0.893 16.713 -6.823 10.089 -0.962 0.026 C39 R2A 32
R2A C40 C33 C 0 1 N N N N N N -0.548 17.076 -6.366 10.855 0.293 0.359 C40 R2A 33
R2A C41 C34 C 0 1 N N N N N N -1.512 15.860 -6.351 10.869 0.492 1.852 C41 R2A 34
R2A C44 C35 C 0 1 Y N N N N N 1.790 15.758 -6.155 10.629 -2.317 -0.093 C44 R2A 35
R2A C45 C36 C 0 1 Y N N N N N 1.699 14.950 -4.988 11.902 -2.872 0.041 C45 R2A 36
R2A C46 C37 C 0 1 Y N N N N N 2.768 14.129 -4.621 12.078 -4.216 -0.140 C46 R2A 37
R2A C47 C38 C 0 1 N N N N N N 2.698 13.234 -3.403 13.452 -4.818 0.005 C47 R2A 38
R2A C48 C39 C 0 1 Y N N N N N 3.924 14.104 -5.395 11.000 -5.029 -0.456 C48 R2A 39
R2A C49 C40 C 0 1 Y N N N N N 4.025 14.895 -6.543 9.733 -4.499 -0.593 C49 R2A 40
R2A C50 C41 C 0 1 Y N N N N N 2.949 15.724 -6.932 9.531 -3.137 -0.414 C50 R2A 41
R2A C52 C42 C 0 1 Y N N N N N -0.254 20.559 -11.372 6.588 3.310 0.091 C52 R2A 42
R2A C53 C43 C 0 1 Y N N N N N -0.363 21.427 -12.459 5.695 4.362 0.102 C53 R2A 43
R2A C54 C44 C 0 1 Y N N N N N 0.713 21.613 -13.340 4.359 4.146 -0.171 C54 R2A 44
R2A C56 C45 C 0 1 N N N N N N 5.061 21.151 -19.715 -2.615 3.711 -0.167 C56 R2A 45
R2A C57 C46 C 0 1 N N N N N N 4.300 21.120 -21.053 -4.043 3.346 -0.589 C57 R2A 46
R2A N25 N1 N 0 1 N N N N N N 4.029 19.802 -21.686 -4.765 4.585 -0.913 N25 R2A 47
R2A N28 N2 N 0 1 N N N N N N 4.491 20.182 -18.820 -1.995 4.536 -1.212 N28 R2A 48
R2A N31 N3 N 0 1 N N N N N N 2.956 21.327 -15.616 1.602 3.662 -0.723 N31 R2A 49
R2A O01 O1 O 0 1 N N N N N N 3.532 18.478 -23.515 -6.503 5.922 -0.562 O01 R2A 50
R2A O14 O2 O 0 1 N N N N N N 7.718 24.723 -30.760 -10.257 -3.032 0.382 O14 R2A 51
R2A O15 O3 O 0 1 N N N N N N 5.826 24.705 -29.708 -10.810 -2.939 2.519 O15 R2A 52
R2A O23 O4 O 0 1 Y N N N N N 7.912 19.917 -29.300 -6.442 -2.872 -1.182 O23 R2A 53
R2A O42 O5 O 0 1 N N N N N N -2.088 15.457 -7.412 10.314 -0.303 2.573 O42 R2A 54
R2A O43 O6 O 0 1 N N N N N N -1.749 15.226 -5.290 11.498 1.553 2.382 O43 R2A 55
R2A O51 O7 O 0 1 Y N N N N N 2.808 16.557 -7.968 8.437 -2.350 -0.476 O51 R2A 56
R2A O55 O8 O 0 1 N N N N N N 4.248 20.998 -13.697 2.067 1.506 -0.982 O55 R2A 57
R2A H171 H1 H 0 0 N N N N N N 8.523 21.870 -33.202 -8.228 -6.273 0.914 H171 R2A 58
R2A H201 H2 H 0 0 N N N N N N 11.133 18.588 -32.150 -6.087 -7.247 -2.632 H201 R2A 59
R2A H211 H3 H 0 0 N N N N N N 9.964 18.305 -29.964 -5.544 -4.882 -2.998 H211 R2A 60
R2A H241 H4 H 0 0 N N N N N N 5.045 19.693 -25.424 -6.047 2.182 -0.772 H241 R2A 61
R2A H261 H5 H 0 0 N N N N N N 3.006 18.405 -20.510 -4.708 6.460 -1.868 H261 R2A 62
R2A H262 H6 H 0 0 N N N N N N 4.545 17.824 -21.233 -4.118 5.096 -2.852 H262 R2A 63
R2A H041 H7 H 0 0 N N N N N N 2.394 22.066 -23.096 -7.373 5.260 1.900 H041 R2A 64
R2A H051 H8 H 0 0 N N N N N N 2.502 23.842 -24.809 -8.487 3.575 3.298 H051 R2A 65
R2A H061 H9 H 0 0 N N N N N N 3.866 23.541 -26.841 -8.395 1.198 2.682 H061 R2A 66
R2A H121 H10 H 0 0 N N N N N N 6.457 22.860 -32.234 -8.091 -2.413 2.449 H121 R2A 67
R2A H122 H11 H 0 0 N N N N N N 5.235 22.549 -30.955 -8.332 -4.177 2.463 H122 R2A 68
R2A H193 H12 H 0 0 N N N N N N 11.555 21.026 -33.948 -8.452 -8.590 -1.129 H193 R2A 69
R2A H192 H13 H 0 0 N N N N N N 11.090 19.341 -34.361 -6.714 -8.963 -1.045 H192 R2A 70
R2A H191 H14 H 0 0 N N N N N N 10.059 20.713 -34.891 -7.609 -8.554 0.438 H191 R2A 71
R2A H271 H15 H 0 0 N N N N N N 4.426 18.113 -18.670 -2.194 6.419 -2.122 H271 R2A 72
R2A H272 H16 H 0 0 N N N N N N 5.852 18.786 -19.532 -2.736 6.339 -0.428 H272 R2A 73
R2A H291 H17 H 0 0 N N N N N N 4.251 19.397 -16.895 -0.464 5.184 0.071 H291 R2A 74
R2A H292 H18 H 0 0 N N N N N N 5.753 20.345 -17.158 -0.162 5.458 -1.661 H292 R2A 75
R2A H302 H19 H 0 0 N N N N N N 4.842 22.061 -16.111 -0.228 2.740 -0.273 H302 R2A 76
R2A H301 H20 H 0 0 N N N N N N 3.602 22.177 -17.405 0.075 3.014 -2.006 H301 R2A 77
R2A H341 H21 H 0 0 N N N N N N 2.945 19.535 -11.880 4.442 0.790 -0.681 H341 R2A 78
R2A H402 H22 H 0 0 N N N N N N -0.497 17.494 -5.350 11.879 0.200 -0.005 H402 R2A 79
R2A H401 H23 H 0 0 N N N N N N -0.952 17.833 -7.054 10.376 1.148 -0.118 H401 R2A 80
R2A H451 H24 H 0 0 N N N N N N 0.803 14.971 -4.385 12.745 -2.243 0.287 H451 R2A 81
R2A H473 H25 H 0 0 N N N N N N 3.077 13.778 -2.525 13.609 -5.120 1.040 H473 R2A 82
R2A H471 H26 H 0 0 N N N N N N 1.654 12.936 -3.226 13.538 -5.688 -0.645 H471 R2A 83
R2A H472 H27 H 0 0 N N N N N N 3.312 12.337 -3.572 14.204 -4.079 -0.275 H472 R2A 84
R2A H481 H28 H 0 0 N N N N N N 4.749 13.469 -5.107 11.153 -6.089 -0.596 H481 R2A 85
R2A H491 H29 H 0 0 N N N N N N 4.928 14.872 -7.135 8.901 -5.142 -0.840 H491 R2A 86
R2A H521 H30 H 0 0 N N N N N N -1.087 20.419 -10.699 7.632 3.487 0.302 H521 R2A 87
R2A H531 H31 H 0 0 N N N N N N -1.287 21.962 -12.624 6.044 5.360 0.322 H531 R2A 88
R2A H541 H32 H 0 0 N N N N N N 0.608 22.300 -14.166 3.667 4.975 -0.166 H541 R2A 89
R2A H562 H33 H 0 0 N N N N N N 6.120 20.911 -19.889 -2.644 4.270 0.768 H562 R2A 90
R2A H561 H34 H 0 0 N N N N N N 4.981 22.154 -19.270 -2.033 2.800 -0.028 H561 R2A 91
R2A H571 H35 H 0 0 N N N N N N 4.885 21.712 -21.773 -4.011 2.700 -1.466 H571 R2A 92
R2A H572 H36 H 0 0 N N N N N N 3.327 21.605 -20.884 -4.545 2.830 0.229 H572 R2A 93
R2A H311 H38 H 0 0 N N N N N N 2.014 21.344 -15.952 1.920 4.557 -0.526 H311 R2A 94
R2A H2 H39 H 0 1 N N N N N N 6.191 25.535 -29.426 -11.731 -2.815 2.254 H2 R2A 95
R2A H3 H40 H 0 1 N N N N N N -2.352 14.515 -5.473 11.480 1.638 3.345 H3 R2A 96
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R2A C19 C18 SING N N 1
R2A C18 C17 DOUB Y N 2
R2A C18 C20 SING Y N 3
R2A C17 C16 SING Y N 4
R2A C20 C21 DOUB Y N 5
R2A C16 C11 SING Y N 6
R2A C16 C22 DOUB Y N 7
R2A C12 C11 SING N N 8
R2A C12 C13 SING N N 9
R2A O14 C13 DOUB N N 10
R2A C21 C22 SING Y N 11
R2A C11 C10 DOUB Y N 12
R2A C13 O15 SING N N 13
R2A C22 O23 SING Y N 14
R2A C10 O23 SING Y N 15
R2A C10 C09 SING N N 16
R2A C09 C08 TRIP N N 17
R2A C08 C07 SING N N 18
R2A C07 C06 DOUB Y N 19
R2A C07 C24 SING Y N 20
R2A C06 C05 SING Y N 21
R2A C24 C03 DOUB Y N 22
R2A C05 C04 DOUB Y N 23
R2A C03 C04 SING Y N 24
R2A C03 C02 SING N N 25
R2A O01 C02 DOUB N N 26
R2A C02 N25 SING N N 27
R2A N25 C57 SING N N 28
R2A N25 C26 SING N N 29
R2A C57 C56 SING N N 30
R2A C26 C27 SING N N 31
R2A C56 N28 SING N N 32
R2A C27 N28 SING N N 33
R2A N28 C29 SING N N 34
R2A C29 C30 SING N N 35
R2A C30 N31 SING N N 36
R2A N31 C32 SING N N 37
R2A C32 O55 DOUB N N 38
R2A C32 C33 SING N N 39
R2A C54 C33 DOUB Y N 40
R2A C54 C53 SING Y N 41
R2A C33 C34 SING Y N 42
R2A C53 C52 DOUB Y N 43
R2A C34 C35 DOUB Y N 44
R2A C52 C35 SING Y N 45
R2A C35 C36 SING N N 46
R2A C36 C37 TRIP N N 47
R2A C37 C38 SING N N 48
R2A O51 C38 SING Y N 49
R2A O51 C50 SING Y N 50
R2A C38 C39 DOUB Y N 51
R2A O42 C41 DOUB N N 52
R2A C50 C49 DOUB Y N 53
R2A C50 C44 SING Y N 54
R2A C39 C40 SING N N 55
R2A C39 C44 SING Y N 56
R2A C49 C48 SING Y N 57
R2A C40 C41 SING N N 58
R2A C41 O43 SING N N 59
R2A C44 C45 DOUB Y N 60
R2A C48 C46 DOUB Y N 61
R2A C45 C46 SING Y N 62
R2A C46 C47 SING N N 63
R2A C17 H171 SING N N 64
R2A C20 H201 SING N N 65
R2A C21 H211 SING N N 66
R2A C24 H241 SING N N 67
R2A C26 H261 SING N N 68
R2A C26 H262 SING N N 69
R2A C04 H041 SING N N 70
R2A C05 H051 SING N N 71
R2A C06 H061 SING N N 72
R2A C12 H121 SING N N 73
R2A C12 H122 SING N N 74
R2A C19 H193 SING N N 75
R2A C19 H192 SING N N 76
R2A C19 H191 SING N N 77
R2A C27 H271 SING N N 78
R2A C27 H272 SING N N 79
R2A C29 H291 SING N N 80
R2A C29 H292 SING N N 81
R2A C30 H302 SING N N 82
R2A C30 H301 SING N N 83
R2A C34 H341 SING N N 84
R2A C40 H402 SING N N 85
R2A C40 H401 SING N N 86
R2A C45 H451 SING N N 87
R2A C47 H473 SING N N 88
R2A C47 H471 SING N N 89
R2A C47 H472 SING N N 90
R2A C48 H481 SING N N 91
R2A C49 H491 SING N N 92
R2A C52 H521 SING N N 93
R2A C53 H531 SING N N 94
R2A C54 H541 SING N N 95
R2A C56 H562 SING N N 96
R2A C56 H561 SING N N 97
R2A C57 H571 SING N N 98
R2A C57 H572 SING N N 99
R2A N31 H311 SING N N 100
R2A O15 H2 SING N N 101
R2A O43 H3 SING N N 102
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R2A SMILES ACDLabs 12.01 "c2(oc1ccc(cc1c2CC(O)=O)C)C#Cc7cc(C(N6CCN(CCNC(=O)c5cc(C#Cc4c(CC(O)=O)c3cc(C)ccc3o4)ccc5)CC6)=O)ccc7"
R2A InChI InChI 1.03 InChI=1S/C46H39N3O8/c1-29-9-13-39-35(23-29)37(27-43(50)51)41(56-39)15-11-31-5-3-7-33(25-31)45(54)47-17-18-48-19-21-49(22-20-48)46(55)34-8-4-6-32(26-34)12-16-42-38(28-44(52)53)36-24-30(2)10-14-40(36)57-42/h3-10,13-14,23-26H,17-22,27-28H2,1-2H3,(H,47,54)(H,50,51)(H,52,53)
R2A InChIKey InChI 1.03 FKZRCFVPEMPOMA-UHFFFAOYSA-N
R2A SMILES_CANONICAL CACTVS 3.385 "Cc1ccc2oc(C#Cc3cccc(c3)C(=O)NCCN4CCN(CC4)C(=O)c5cccc(c5)C#Cc6oc7ccc(C)cc7c6CC(O)=O)c(CC(O)=O)c2c1"
R2A SMILES CACTVS 3.385 "Cc1ccc2oc(C#Cc3cccc(c3)C(=O)NCCN4CCN(CC4)C(=O)c5cccc(c5)C#Cc6oc7ccc(C)cc7c6CC(O)=O)c(CC(O)=O)c2c1"
R2A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc2c(c1)c(c(o2)C#Cc3cccc(c3)C(=O)NCCN4CCN(CC4)C(=O)c5cccc(c5)C#Cc6c(c7cc(ccc7o6)C)CC(=O)O)CC(=O)O"
R2A SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc2c(c1)c(c(o2)C#Cc3cccc(c3)C(=O)NCCN4CCN(CC4)C(=O)c5cccc(c5)C#Cc6c(c7cc(ccc7o6)C)CC(=O)O)CC(=O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
R2A "SYSTEMATIC NAME" ACDLabs 12.01 "(2-{[3-(4-{2-[(3-{[3-(carboxymethyl)-5-methyl-1-benzofuran-2-yl]ethynyl}benzene-1-carbonyl)amino]ethyl}piperazine-1-carbonyl)phenyl]ethynyl}-5-methyl-1-benzofuran-3-yl)acetic acid"
R2A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[2-[2-[3-[2-[4-[3-[2-[3-(2-hydroxy-2-oxoethyl)-5-methyl-1-benzofuran-2-yl]ethynyl]phenyl]carbonylpiperazin-1-yl]ethylcarbamoyl]phenyl]ethynyl]-5-methyl-1-benzofuran-3-yl]ethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R2A 'Create component' 2020-01-24 RCSB
R2A 'Initial release' 2021-01-27 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
R2A C10 C 9.192 -0.941 1
R2A C13 C 10.250 2.001 2
R2A C17 C 5.598 0.559 3
R2A C20 C 4.299 -1.691 4
R2A C21 C 5.598 -2.441 5
R2A C22 C 6.897 -1.691 6
R2A C24 C 14.442 0.358 7
R2A C26 C 18.942 2.956 8
R2A C02 C 16.692 1.657 9
R2A C03 C 15.942 0.358 10
R2A C04 C 16.692 -0.941 11
R2A C05 C 15.942 -2.240 12
R2A C06 C 14.442 -2.240 13
R2A C07 C 13.692 -0.941 14
R2A C08 C 12.192 -0.941 15
R2A C09 C 10.692 -0.941 16
R2A C11 C 8.316 0.266 17
R2A C12 C 8.783 1.691 18
R2A C16 C 6.897 -0.191 19
R2A C18 C 4.299 -0.191 20
R2A C19 C 3.000 0.559 21
R2A C27 C 20.442 2.956 22
R2A C29 C 22.692 1.657 23
R2A C30 C 23.442 2.956 24
R2A C32 C 25.692 4.255 25
R2A C33 C 27.192 4.255 26
R2A C34 C 27.942 2.956 27
R2A C35 C 29.442 2.956 28
R2A C36 C 30.192 1.657 29
R2A C37 C 30.942 0.358 30
R2A C38 C 31.692 -0.941 31
R2A C39 C 33.175 -1.096 32
R2A C40 C 34.177 0.020 33
R2A C41 C 35.645 -0.289 34
R2A C44 C 33.489 -2.554 35
R2A C45 C 34.788 -3.304 36
R2A C46 C 34.788 -4.804 37
R2A C47 C 36.087 -5.554 38
R2A C48 C 33.489 -5.554 39
R2A C49 C 32.190 -4.804 40
R2A C50 C 32.190 -3.304 41
R2A C52 C 30.192 4.255 42
R2A C53 C 29.442 5.554 43
R2A C54 C 27.942 5.554 44
R2A C56 C 20.442 0.358 45
R2A C57 C 18.942 0.358 46
R2A N25 N 18.192 1.657 47
R2A N28 N 21.192 1.657 48
R2A N31 N 24.942 2.956 49
R2A O01 O 15.942 2.956 50
R2A O14 O 10.716 3.427 51
R2A O15 O 11.252 0.884 52
R2A O23 O 8.316 -2.149 53
R2A O42 O 36.646 0.828 54
R2A O43 O 36.110 -1.715 55
R2A O51 O 31.084 -2.303 56
R2A O55 O 24.942 5.554 57
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
R2A C19 C18 SINGLE NONE 1
R2A C18 C17 DOUBLE NONE 2
R2A C18 C20 SINGLE NONE 3
R2A C17 C16 SINGLE NONE 4
R2A C20 C21 DOUBLE NONE 5
R2A C16 C11 SINGLE NONE 6
R2A C16 C22 DOUBLE NONE 7
R2A C12 C11 SINGLE NONE 8
R2A C12 C13 SINGLE NONE 9
R2A O14 C13 DOUBLE NONE 10
R2A C21 C22 SINGLE NONE 11
R2A C11 C10 DOUBLE NONE 12
R2A C13 O15 SINGLE NONE 13
R2A C22 O23 SINGLE NONE 14
R2A C10 O23 SINGLE NONE 15
R2A C10 C09 SINGLE NONE 16
R2A C09 C08 TRIPLE NONE 17
R2A C08 C07 SINGLE NONE 18
R2A C07 C06 SINGLE NONE 19
R2A C07 C24 DOUBLE NONE 20
R2A C06 C05 DOUBLE NONE 21
R2A C24 C03 SINGLE NONE 22
R2A C05 C04 SINGLE NONE 23
R2A C03 C04 DOUBLE NONE 24
R2A C03 C02 SINGLE NONE 25
R2A O01 C02 DOUBLE NONE 26
R2A C02 N25 SINGLE NONE 27
R2A N25 C57 SINGLE NONE 28
R2A N25 C26 SINGLE NONE 29
R2A C57 C56 SINGLE NONE 30
R2A C26 C27 SINGLE NONE 31
R2A C56 N28 SINGLE NONE 32
R2A C27 N28 SINGLE NONE 33
R2A N28 C29 SINGLE NONE 34
R2A C29 C30 SINGLE NONE 35
R2A C30 N31 SINGLE NONE 36
R2A N31 C32 SINGLE NONE 37
R2A C32 O55 DOUBLE NONE 38
R2A C32 C33 SINGLE NONE 39
R2A C54 C33 SINGLE NONE 40
R2A C54 C53 DOUBLE NONE 41
R2A C33 C34 DOUBLE NONE 42
R2A C53 C52 SINGLE NONE 43
R2A C34 C35 SINGLE NONE 44
R2A C52 C35 DOUBLE NONE 45
R2A C35 C36 SINGLE NONE 46
R2A C36 C37 TRIPLE NONE 47
R2A C37 C38 SINGLE NONE 48
R2A O51 C38 SINGLE NONE 49
R2A O51 C50 SINGLE NONE 50
R2A C38 C39 DOUBLE NONE 51
R2A O42 C41 DOUBLE NONE 52
R2A C50 C49 SINGLE NONE 53
R2A C50 C44 DOUBLE NONE 54
R2A C39 C40 SINGLE NONE 55
R2A C39 C44 SINGLE NONE 56
R2A C49 C48 DOUBLE NONE 57
R2A C40 C41 SINGLE NONE 58
R2A C41 O43 SINGLE NONE 59
R2A C44 C45 SINGLE NONE 60
R2A C48 C46 SINGLE NONE 61
R2A C45 C46 DOUBLE NONE 62
R2A C46 C47 SINGLE NONE 63
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
R2A MurckoScaffold S1 scaffold 'O=C(NCCN1CCN(C(=O)c2cccc(C#Cc3cc4ccccc4o3)c2)CC1)c1cccc(C#Cc2cc3ccccc3o2)c1' InChI=1S/C40H31N3O4/c44-39(33-11-5-7-29(25-33)15-17-35-27-31-9-1-3-13-37(31)46-35)41-19-20-42-21-23-43(24-22-42)40(45)34-12-6-8-30(26-34)16-18-36-28-32-10-2-4-14-38(32)47-36/h1-14,25-28H,19-24H2,(H,41,44) DNMLFXNBQYLPGV-UHFFFAOYSA-N
R2A amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
R2A furan F2 fragment c1ccoc1 InChI=1S/C4H4O/c1-2-4-5-3-1/h1-4H YLQBMQCUIZJEEH-UHFFFAOYSA-N
R2A phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
R2A piperazine F4 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
R2A C10 S1 1
R2A C17 S1 1
R2A C20 S1 1
R2A C21 S1 1
R2A C22 S1 1
R2A C24 S1 1
R2A C26 S1 1
R2A C02 S1 1
R2A C03 S1 1
R2A C04 S1 1
R2A C05 S1 1
R2A C06 S1 1
R2A C07 S1 1
R2A C08 S1 1
R2A C09 S1 1
R2A C11 S1 1
R2A C16 S1 1
R2A C18 S1 1
R2A C27 S1 1
R2A C29 S1 1
R2A C30 S1 1
R2A C32 S1 1
R2A C33 S1 1
R2A C34 S1 1
R2A C35 S1 1
R2A C36 S1 1
R2A C37 S1 1
R2A C38 S1 1
R2A C39 S1 1
R2A C44 S1 1
R2A C45 S1 1
R2A C46 S1 1
R2A C48 S1 1
R2A C49 S1 1
R2A C50 S1 1
R2A C52 S1 1
R2A C53 S1 1
R2A C54 S1 1
R2A C56 S1 1
R2A C57 S1 1
R2A N25 S1 1
R2A N28 S1 1
R2A N31 S1 1
R2A O01 S1 1
R2A O23 S1 1
R2A O51 S1 1
R2A O55 S1 1
R2A N25 F1 1
R2A C02 F1 1
R2A O01 F1 1
R2A C03 F1 1
R2A N31 F1 2
R2A C32 F1 2
R2A O55 F1 2
R2A C33 F1 2
R2A C10 F2 1
R2A C11 F2 1
R2A C16 F2 1
R2A C22 F2 1
R2A O23 F2 1
R2A C38 F2 2
R2A C39 F2 2
R2A C44 F2 2
R2A C50 F2 2
R2A O51 F2 2
R2A C17 F3 1
R2A C18 F3 1
R2A C20 F3 1
R2A C21 F3 1
R2A C22 F3 1
R2A C16 F3 1
R2A C24 F3 2
R2A C07 F3 2
R2A C06 F3 2
R2A C05 F3 2
R2A C04 F3 2
R2A C03 F3 2
R2A C33 F3 3
R2A C54 F3 3
R2A C53 F3 3
R2A C52 F3 3
R2A C35 F3 3
R2A C34 F3 3
R2A C44 F3 4
R2A C50 F3 4
R2A C49 F3 4
R2A C48 F3 4
R2A C46 F3 4
R2A C45 F3 4
R2A N25 F4 1
R2A C57 F4 1
R2A C56 F4 1
R2A N28 F4 1
R2A C27 F4 1
R2A C26 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id R2A
_pdbe_chem_comp_rdkit_properties.exactmw 761.274
_pdbe_chem_comp_rdkit_properties.amw 761.831
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 57
_pdbe_chem_comp_rdkit_properties.NumAtoms 96
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.217
_pdbe_chem_comp_rdkit_properties.NumRings 7
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 6
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 383.446
_pdbe_chem_comp_rdkit_properties.tpsa 153.530
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.634
_pdbe_chem_comp_rdkit_properties.CrippenMR 207.030
_pdbe_chem_comp_rdkit_properties.chi0v 27.608
_pdbe_chem_comp_rdkit_properties.chi1v 15.080
_pdbe_chem_comp_rdkit_properties.chi2v 6.722
_pdbe_chem_comp_rdkit_properties.chi3v 6.722
_pdbe_chem_comp_rdkit_properties.chi4v 4.418
_pdbe_chem_comp_rdkit_properties.chi0n 66.608
_pdbe_chem_comp_rdkit_properties.chi1n 34.344
_pdbe_chem_comp_rdkit_properties.chi2n 6.722
_pdbe_chem_comp_rdkit_properties.chi3n 6.722
_pdbe_chem_comp_rdkit_properties.chi4n 4.418
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -7.080
_pdbe_chem_comp_rdkit_properties.kappa1 13.260
_pdbe_chem_comp_rdkit_properties.kappa2 16.739
_pdbe_chem_comp_rdkit_properties.kappa3 9.078
_pdbe_chem_comp_rdkit_properties.Phi 3.894
#
_pdbe_chem_comp_external_mappings.comp_id R2A
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 155387719
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
R2A C10 -10.620 1.691 -1.169 ETKDGv3 1
R2A C13 -10.740 0.283 1.784 ETKDGv3 2
R2A C17 -14.045 1.765 0.165 ETKDGv3 3
R2A C20 -15.126 1.717 -2.051 ETKDGv3 4
R2A C21 -13.941 1.699 -2.688 ETKDGv3 5
R2A C22 -12.715 1.709 -1.876 ETKDGv3 6
R2A C24 -5.910 0.934 -0.110 ETKDGv3 7
R2A C26 -2.180 -1.295 -0.178 ETKDGv3 8
R2A C02 -3.741 0.255 1.080 ETKDGv3 9
R2A C03 -4.427 0.843 -0.094 ETKDGv3 10
R2A C04 -3.729 1.338 -1.133 ETKDGv3 11
R2A C05 -4.430 1.936 -2.287 ETKDGv3 12
R2A C06 -5.766 2.004 -2.301 ETKDGv3 13
R2A C07 -6.544 1.481 -1.158 ETKDGv3 14
R2A C08 -7.981 1.561 -1.175 ETKDGv3 15
R2A C09 -9.184 1.624 -1.180 ETKDGv3 16
R2A C11 -11.387 1.748 -0.076 ETKDGv3 17
R2A C12 -10.934 1.701 1.354 ETKDGv3 18
R2A C16 -12.762 1.745 -0.559 ETKDGv3 19
R2A C18 -15.187 1.737 -0.554 ETKDGv3 20
R2A C19 -16.516 1.794 0.138 ETKDGv3 21
R2A C27 -1.609 -2.619 0.337 ETKDGv3 22
R2A C29 0.767 -1.975 0.509 ETKDGv3 23
R2A C30 2.010 -2.594 1.155 ETKDGv3 24
R2A C32 3.616 -2.823 -0.800 ETKDGv3 25
R2A C33 4.888 -2.464 -1.471 ETKDGv3 26
R2A C34 5.942 -1.984 -0.781 ETKDGv3 27
R2A C35 7.204 -1.644 -1.477 ETKDGv3 28
R2A C36 8.317 -1.126 -0.727 ETKDGv3 29
R2A C37 9.253 -0.692 -0.105 ETKDGv3 30
R2A C38 10.378 -0.173 0.625 ETKDGv3 31
R2A C39 11.660 -0.310 0.276 ETKDGv3 32
R2A C40 12.200 -0.971 -0.958 ETKDGv3 33
R2A C41 12.192 -0.008 -2.100 ETKDGv3 34
R2A C44 12.422 0.422 1.281 ETKDGv3 35
R2A C45 13.869 0.658 1.419 ETKDGv3 36
R2A C46 14.301 1.403 2.460 ETKDGv3 37
R2A C47 15.767 1.638 2.662 ETKDGv3 38
R2A C48 13.314 1.939 3.452 ETKDGv3 39
R2A C49 11.998 1.709 3.302 ETKDGv3 40
R2A C50 11.558 0.912 2.148 ETKDGv3 41
R2A C52 7.308 -1.824 -2.801 ETKDGv3 42
R2A C53 6.165 -2.361 -3.564 ETKDGv3 43
R2A C54 5.023 -2.667 -2.938 ETKDGv3 44
R2A C56 -0.798 -1.541 2.378 ETKDGv3 45
R2A C57 -1.418 -0.199 1.950 ETKDGv3 46
R2A N25 -2.473 -0.419 0.959 ETKDGv3 47
R2A N28 -0.450 -2.411 1.230 ETKDGv3 48
R2A N31 3.215 -2.196 0.430 ETKDGv3 49
R2A O01 -4.286 0.344 2.213 ETKDGv3 50
R2A O14 -11.713 -0.378 2.235 ETKDGv3 51
R2A O15 -9.494 -0.319 1.643 ETKDGv3 52
R2A O23 -11.402 1.679 -2.323 ETKDGv3 53
R2A O42 13.174 0.760 -2.285 ETKDGv3 54
R2A O43 11.080 0.070 -2.932 ETKDGv3 55
R2A O51 10.260 0.571 1.798 ETKDGv3 56
R2A O55 2.866 -3.685 -1.334 ETKDGv3 57
R2A H171 -14.062 1.801 1.247 ETKDGv3 58
R2A H201 -16.040 1.715 -2.630 ETKDGv3 59
R2A H211 -13.889 1.680 -3.768 ETKDGv3 60
R2A H241 -6.479 0.546 0.728 ETKDGv3 61
R2A H261 -3.101 -1.508 -0.762 ETKDGv3 62
R2A H262 -1.446 -0.801 -0.849 ETKDGv3 63
R2A H041 -2.646 1.329 -1.134 ETKDGv3 64
R2A H051 -3.859 2.324 -3.121 ETKDGv3 65
R2A H061 -6.274 2.446 -3.150 ETKDGv3 66
R2A H121 -11.689 2.192 2.004 ETKDGv3 67
R2A H122 -9.980 2.259 1.470 ETKDGv3 68
R2A H193 -16.504 1.166 1.055 ETKDGv3 69
R2A H192 -17.320 1.417 -0.528 ETKDGv3 70
R2A H191 -16.743 2.844 0.418 ETKDGv3 71
R2A H271 -2.404 -3.161 0.894 ETKDGv3 72
R2A H272 -1.330 -3.269 -0.521 ETKDGv3 73
R2A H291 0.868 -0.869 0.499 ETKDGv3 74
R2A H292 0.737 -2.303 -0.553 ETKDGv3 75
R2A H302 2.095 -2.249 2.207 ETKDGv3 76
R2A H301 1.925 -3.703 1.170 ETKDGv3 77
R2A H341 5.899 -1.867 0.294 ETKDGv3 78
R2A H402 13.236 -1.326 -0.771 ETKDGv3 79
R2A H401 11.584 -1.860 -1.215 ETKDGv3 80
R2A H451 14.563 0.242 0.699 ETKDGv3 81
R2A H473 15.935 2.521 3.315 ETKDGv3 82
R2A H471 16.269 1.828 1.689 ETKDGv3 83
R2A H472 16.223 0.746 3.140 ETKDGv3 84
R2A H481 13.660 2.520 4.298 ETKDGv3 85
R2A H491 11.280 2.097 4.013 ETKDGv3 86
R2A H521 8.226 -1.580 -3.324 ETKDGv3 87
R2A H531 6.255 -2.508 -4.633 ETKDGv3 88
R2A H541 4.192 -3.057 -3.513 ETKDGv3 89
R2A H562 -1.527 -2.078 3.024 ETKDGv3 90
R2A H561 0.096 -1.347 3.008 ETKDGv3 91
R2A H571 -1.818 0.312 2.853 ETKDGv3 92
R2A H572 -0.644 0.467 1.516 ETKDGv3 93
R2A H311 3.771 -1.403 0.819 ETKDGv3 94
R2A H2 -9.350 -1.285 1.913 ETKDGv3 95
R2A H3 11.051 0.730 -3.700 ETKDGv3 96
#