data_Q0X
#
_chem_comp.id Q0X
_chem_comp.name (Z)-3-[3,4-bis(oxidanyl)phenyl]-2-oxidanyl-1-[2,4,6-tris(oxidanyl)phenyl]prop-2-en-1-one
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H12 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "taxifolin chalcone"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-10-06
_chem_comp.pdbx_modified_date 2022-12-31
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 304.252
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code Q0X
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8B7R
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Q0X O01 O1 O 0 1 N N N N N N 44.752 75.896 60.966 -1.616 2.767 0.470 O01 Q0X 1
Q0X C02 C1 C 0 1 N N N N N N 45.152 76.509 60.004 -1.293 1.600 0.334 C02 Q0X 2
Q0X C03 C2 C 0 1 N N N N N N 45.143 75.789 58.680 0.120 1.214 0.424 C03 Q0X 3
Q0X O04 O2 O 0 1 N N N N N N 44.398 76.432 57.746 1.056 2.139 0.767 O04 Q0X 4
Q0X C05 C3 C 0 1 N N N N N N 45.764 74.676 58.311 0.491 -0.061 0.166 C05 Q0X 5
Q0X C06 C4 C 0 1 Y N N N N N 45.647 74.153 56.963 1.916 -0.413 0.102 C06 Q0X 6
Q0X C07 C5 C 0 1 Y N N N N N 44.635 73.269 56.610 2.347 -1.677 0.522 C07 Q0X 7
Q0X C08 C6 C 0 1 Y N N N N N 44.495 72.788 55.328 3.684 -2.004 0.460 C08 Q0X 8
Q0X C09 C7 C 0 1 Y N N N N N 45.359 73.204 54.329 4.607 -1.083 -0.017 C09 Q0X 9
Q0X O10 O3 O 0 1 N N N N N N 45.263 72.757 53.053 5.924 -1.410 -0.071 O10 Q0X 10
Q0X C11 C8 C 0 1 Y N N N N N 46.378 74.105 54.667 4.186 0.178 -0.438 C11 Q0X 11
Q0X O12 O4 O 0 1 N N N N N N 47.237 74.514 53.696 5.093 1.077 -0.905 O12 Q0X 12
Q0X C13 C9 C 0 1 Y N N N N N 46.499 74.576 55.961 2.847 0.513 -0.384 C13 Q0X 13
Q0X C14 C10 C 0 1 Y N N N N N 45.556 77.943 60.201 -2.320 0.577 0.085 C14 Q0X 14
Q0X C15 C11 C 0 1 Y N N N N N 45.408 78.634 61.437 -2.867 -0.150 1.156 C15 Q0X 15
Q0X O16 O5 O 0 1 N N N N N N 44.905 78.009 62.495 -2.449 0.090 2.424 O16 Q0X 16
Q0X C17 C12 C 0 1 Y N N N N N 45.758 79.943 61.604 -3.832 -1.110 0.914 C17 Q0X 17
Q0X C18 C13 C 0 1 Y N N N N N 46.270 80.600 60.526 -4.260 -1.357 -0.384 C18 Q0X 18
Q0X O19 O6 O 0 1 N N N N N N 46.611 81.799 60.630 -5.208 -2.301 -0.614 O19 Q0X 19
Q0X C20 C14 C 0 1 Y N N N N N 46.447 80.024 59.308 -3.725 -0.643 -1.449 C20 Q0X 20
Q0X C21 C15 C 0 1 Y N N N N N 46.091 78.714 59.147 -2.764 0.325 -1.223 C21 Q0X 21
Q0X O22 O7 O 0 1 N N N N N N 46.257 78.131 57.944 -2.242 1.021 -2.264 O22 Q0X 22
Q0X H1 H1 H 0 1 N N N N N N 44.008 77.208 58.131 1.944 1.774 0.885 H1 Q0X 23
Q0X H2 H2 H 0 1 N N N N N N 46.371 74.147 59.031 -0.260 -0.821 0.007 H2 Q0X 24
Q0X H3 H3 H 0 1 N N N N N N 43.935 72.948 57.367 1.632 -2.395 0.894 H3 Q0X 25
Q0X H4 H4 H 0 1 N N N N N N 43.709 72.084 55.100 4.015 -2.979 0.785 H4 Q0X 26
Q0X H5 H5 H 0 1 N N N N N N 44.529 72.158 52.981 6.416 -1.195 0.733 H5 Q0X 27
Q0X H6 H6 H 0 1 N N N N N N 47.870 75.118 54.066 5.241 1.026 -1.859 H6 Q0X 28
Q0X H7 H7 H 0 1 N N N N N N 47.276 75.289 56.194 2.520 1.489 -0.709 H7 Q0X 29
Q0X H9 H9 H 0 1 N N N N N N 44.711 77.107 62.268 -2.960 0.771 2.884 H9 Q0X 30
Q0X H10 H10 H 0 1 N N N N N N 45.634 80.439 62.555 -4.253 -1.669 1.735 H10 Q0X 31
Q0X H11 H11 H 0 1 N N N N N N 46.860 80.589 58.485 -4.064 -0.841 -2.455 H11 Q0X 32
Q0X H12 H12 H 0 1 N N N N N N 45.967 77.227 57.987 -2.679 1.868 -2.430 H12 Q0X 33
Q0X H14 H14 H 0 1 N N N N N N 46.446 82.100 61.516 -6.114 -1.964 -0.588 H14 Q0X 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Q0X O10 C09 SING N N 1
Q0X O12 C11 SING N N 2
Q0X C09 C11 DOUB Y N 3
Q0X C09 C08 SING Y N 4
Q0X C11 C13 SING Y N 5
Q0X C08 C07 DOUB Y N 6
Q0X C13 C06 DOUB Y N 7
Q0X C07 C06 SING Y N 8
Q0X C06 C05 SING N N 9
Q0X O04 C03 SING N N 10
Q0X O22 C21 SING N N 11
Q0X C05 C03 DOUB N Z 12
Q0X C03 C02 SING N N 13
Q0X C21 C20 DOUB Y N 14
Q0X C21 C14 SING Y N 15
Q0X C20 C18 SING Y N 16
Q0X C02 C14 SING N N 17
Q0X C02 O01 DOUB N N 18
Q0X C14 C15 DOUB Y N 19
Q0X C18 O19 SING N N 20
Q0X C18 C17 DOUB Y N 21
Q0X C15 C17 SING Y N 22
Q0X C15 O16 SING N N 23
Q0X O04 H1 SING N N 24
Q0X C05 H2 SING N N 25
Q0X C07 H3 SING N N 26
Q0X C08 H4 SING N N 27
Q0X O10 H5 SING N N 28
Q0X O12 H6 SING N N 29
Q0X C13 H7 SING N N 30
Q0X O16 H9 SING N N 31
Q0X C17 H10 SING N N 32
Q0X C20 H11 SING N N 33
Q0X O22 H12 SING N N 34
Q0X O19 H14 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Q0X InChI InChI 1.06 InChI=1S/C15H12O7/c16-8-5-11(19)14(12(20)6-8)15(22)13(21)4-7-1-2-9(17)10(18)3-7/h1-6,16-21H/b13-4-
Q0X InChIKey InChI 1.06 CUYYQQQQHCDPCX-PQMHYQBVSA-N
Q0X SMILES_CANONICAL CACTVS 3.385 Oc1cc(O)c(c(O)c1)C(=O)/C(O)=C/c2ccc(O)c(O)c2
Q0X SMILES CACTVS 3.385 Oc1cc(O)c(c(O)c1)C(=O)C(O)=Cc2ccc(O)c(O)c2
Q0X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(c(cc1/C=C(/C(=O)c2c(cc(cc2O)O)O)\O)O)O
Q0X SMILES "OpenEye OEToolkits" 2.0.7 c1cc(c(cc1C=C(C(=O)c2c(cc(cc2O)O)O)O)O)O
#
_pdbx_chem_comp_identifier.comp_id Q0X
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
(~{Z})-3-[3,4-bis(oxidanyl)phenyl]-2-oxidanyl-1-[2,4,6-tris(oxidanyl)phenyl]prop-2-en-1-one
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id Q0X
_pdbx_chem_comp_synonyms.name "taxifolin chalcone"
_pdbx_chem_comp_synonyms.provenance AUTHOR
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Q0X 'Create component' 2022-10-06 PDBE
Q0X 'Modify name' 2022-10-31 PDBE
Q0X 'Initial release' 2022-11-23 RCSB
Q0X 'Modify aromatic_flag' 2022-12-31 PDBE
#
_pdbe_chem_comp_synonyms.comp_id Q0X
_pdbe_chem_comp_synonyms.name 'taxifolin chalcone'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
Q0X O01 O 5.104 0.892 1
Q0X C02 C 6.404 0.142 2
Q0X C03 C 7.702 0.892 3
Q0X O04 O 9.002 0.142 4
Q0X C05 C 7.702 2.393 5
Q0X C06 C 9.002 3.143 6
Q0X C07 C 9.002 4.643 7
Q0X C08 C 10.301 5.393 8
Q0X C09 C 11.600 4.643 9
Q0X O10 O 12.899 5.393 10
Q0X C11 C 11.600 3.143 11
Q0X O12 O 12.899 2.393 12
Q0X C13 C 10.301 2.393 13
Q0X C14 C 6.404 -1.357 14
Q0X C15 C 5.104 -2.107 15
Q0X O16 O 3.805 -1.357 16
Q0X C17 C 5.104 -3.607 17
Q0X C18 C 6.404 -4.357 18
Q0X O19 O 6.404 -5.857 19
Q0X C20 C 7.702 -3.607 20
Q0X C21 C 7.702 -2.107 21
Q0X O22 O 9.002 -1.357 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
Q0X O10 C09 SINGLE NONE 1
Q0X O12 C11 SINGLE NONE 2
Q0X C09 C11 DOUBLE NONE 3
Q0X C09 C08 SINGLE NONE 4
Q0X C11 C13 SINGLE NONE 5
Q0X C08 C07 DOUBLE NONE 6
Q0X C13 C06 DOUBLE NONE 7
Q0X C07 C06 SINGLE NONE 8
Q0X C06 C05 SINGLE ENDUPRIGHT 9
Q0X O04 C03 SINGLE ENDUPRIGHT 10
Q0X O22 C21 SINGLE NONE 11
Q0X C05 C03 DOUBLE NONE 12
Q0X C03 C02 SINGLE ENDUPRIGHT 13
Q0X C21 C20 DOUBLE NONE 14
Q0X C21 C14 SINGLE NONE 15
Q0X C20 C18 SINGLE NONE 16
Q0X C02 C14 SINGLE NONE 17
Q0X C02 O01 DOUBLE NONE 18
Q0X C14 C15 DOUBLE NONE 19
Q0X C18 O19 SINGLE NONE 20
Q0X C18 C17 DOUBLE NONE 21
Q0X C15 C17 SINGLE NONE 22
Q0X C15 O16 SINGLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
Q0X MurckoScaffold S1 scaffold O=C(/C=C/c1ccccc1)c1ccccc1 InChI=1S/C15H12O/c16-15(14-9-5-2-6-10-14)12-11-13-7-3-1-4-8-13/h1-12H/b12-11+ DQFBYFPFKXHELB-VAWYXSNFSA-N
Q0X phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
Q0X O01 S1 1
Q0X C02 S1 1
Q0X C03 S1 1
Q0X C05 S1 1
Q0X C06 S1 1
Q0X C07 S1 1
Q0X C08 S1 1
Q0X C09 S1 1
Q0X C11 S1 1
Q0X C13 S1 1
Q0X C14 S1 1
Q0X C15 S1 1
Q0X C17 S1 1
Q0X C18 S1 1
Q0X C20 S1 1
Q0X C21 S1 1
Q0X C06 F1 1
Q0X C13 F1 1
Q0X C11 F1 1
Q0X C09 F1 1
Q0X C08 F1 1
Q0X C07 F1 1
Q0X C14 F1 2
Q0X C21 F1 2
Q0X C20 F1 2
Q0X C18 F1 2
Q0X C17 F1 2
Q0X C15 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id Q0X
_pdbe_chem_comp_rdkit_properties.exactmw 304.058
_pdbe_chem_comp_rdkit_properties.amw 304.254
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 141.200
_pdbe_chem_comp_rdkit_properties.tpsa 138.450
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.425
_pdbe_chem_comp_rdkit_properties.CrippenMR 72.562
_pdbe_chem_comp_rdkit_properties.chi0v 10.358
_pdbe_chem_comp_rdkit_properties.chi1v 5.429
_pdbe_chem_comp_rdkit_properties.chi2v 2.326
_pdbe_chem_comp_rdkit_properties.chi3v 2.326
_pdbe_chem_comp_rdkit_properties.chi4v 1.396
_pdbe_chem_comp_rdkit_properties.chi0n 22.358
_pdbe_chem_comp_rdkit_properties.chi1n 10.878
_pdbe_chem_comp_rdkit_properties.chi2n 2.326
_pdbe_chem_comp_rdkit_properties.chi3n 2.326
_pdbe_chem_comp_rdkit_properties.chi4n 1.396
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.350
_pdbe_chem_comp_rdkit_properties.kappa1 5.800
_pdbe_chem_comp_rdkit_properties.kappa2 5.566
_pdbe_chem_comp_rdkit_properties.kappa3 2.877
_pdbe_chem_comp_rdkit_properties.Phi 1.467
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
Q0X UniChem PubChem 60112525
Q0X UniChem Nikkaji J2.505.299D
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
Q0X O01 -1.593 -1.349 -2.133 ETKDGv3 1
Q0X C02 -1.457 -0.767 -1.021 ETKDGv3 2
Q0X C03 -0.101 -0.455 -0.503 ETKDGv3 3
Q0X O04 0.069 -0.135 0.846 ETKDGv3 4
Q0X C05 0.969 -0.510 -1.315 ETKDGv3 5
Q0X C06 2.349 -0.194 -0.882 ETKDGv3 6
Q0X C07 2.637 0.943 0.027 ETKDGv3 7
Q0X C08 3.896 1.221 0.382 ETKDGv3 8
Q0X C09 5.022 0.413 -0.132 ETKDGv3 9
Q0X O10 6.308 0.754 0.294 ETKDGv3 10
Q0X C11 4.771 -0.609 -0.987 ETKDGv3 11
Q0X O12 5.777 -1.413 -1.530 ETKDGv3 12
Q0X C13 3.375 -0.905 -1.380 ETKDGv3 13
Q0X C14 -2.669 -0.383 -0.267 ETKDGv3 14
Q0X C15 -3.605 -1.296 0.088 ETKDGv3 15
Q0X O16 -3.460 -2.661 -0.176 ETKDGv3 16
Q0X C17 -4.824 -0.859 0.804 ETKDGv3 17
Q0X C18 -5.005 0.428 1.119 ETKDGv3 18
Q0X O19 -6.156 0.818 1.799 ETKDGv3 19
Q0X C20 -3.984 1.427 0.742 ETKDGv3 20
Q0X C21 -2.878 1.051 0.081 ETKDGv3 21
Q0X O22 -1.927 2.002 -0.292 ETKDGv3 22
Q0X H1 -0.698 -0.141 1.506 ETKDGv3 23
Q0X H2 0.842 -0.846 -2.338 ETKDGv3 24
Q0X H3 1.837 1.578 0.386 ETKDGv3 25
Q0X H4 4.095 2.057 1.041 ETKDGv3 26
Q0X H5 7.149 0.270 0.016 ETKDGv3 27
Q0X H6 6.762 -1.300 -1.342 ETKDGv3 28
Q0X H7 3.191 -1.723 -2.067 ETKDGv3 29
Q0X H9 -2.629 -3.063 -0.591 ETKDGv3 30
Q0X H10 -5.570 -1.593 1.080 ETKDGv3 31
Q0X H11 -4.140 2.468 0.995 ETKDGv3 32
Q0X H12 -2.037 2.985 -0.072 ETKDGv3 33
Q0X H14 -6.315 1.787 2.048 ETKDGv3 34
#