data_PYZ
#
_chem_comp.id PYZ
_chem_comp.name 4-IODOPYRAZOLE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C3 H3 I N2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 193.974
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PYZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1DEH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PYZ N1 N1 N 0 1 Y N N N N N 2.735 -1.345 -67.356 0.663 0.000 3.030 N1 PYZ 1
PYZ N2 N2 N 0 1 Y N N N N N 3.049 -1.111 -66.045 -0.736 -0.002 3.018 N2 PYZ 2
PYZ C3 C3 C 0 1 Y N N N N N 2.013 -0.549 -65.409 -1.134 0.002 1.771 C3 PYZ 3
PYZ C4 C4 C 0 1 Y N N N N N 1.104 -0.485 -66.411 -0.001 -0.000 0.950 C4 PYZ 4
PYZ I4 I4 I 0 1 N N N N N N -0.794 0.222 -66.040 0.003 -0.000 -1.144 I4 PYZ 5
PYZ C5 C5 C 0 1 Y N N N N N 1.488 -0.955 -67.643 1.090 0.000 1.749 C5 PYZ 6
PYZ HN1 HN1 H 0 1 N N N N N N 3.361 -1.763 -68.043 1.227 0.001 3.819 HN1 PYZ 7
PYZ H3 H3 H 0 1 N N N N N N 1.931 -0.229 -64.356 -2.160 0.002 1.434 H3 PYZ 8
PYZ H5 H5 H 0 1 N N N N N N 0.943 -1.005 -68.601 2.119 0.002 1.421 H5 PYZ 9
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PYZ N1 N2 SING Y N 1
PYZ N1 C5 SING Y N 2
PYZ N1 HN1 SING N N 3
PYZ N2 C3 DOUB Y N 4
PYZ C3 C4 SING Y N 5
PYZ C3 H3 SING N N 6
PYZ C4 I4 SING N N 7
PYZ C4 C5 DOUB Y N 8
PYZ C5 H5 SING N N 9
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PYZ SMILES ACDLabs 10.04 Ic1cnnc1
PYZ SMILES_CANONICAL CACTVS 3.341 Ic1c[nH]nc1
PYZ SMILES CACTVS 3.341 Ic1c[nH]nc1
PYZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1c(cn[nH]1)I
PYZ SMILES "OpenEye OEToolkits" 1.5.0 c1c(cn[nH]1)I
PYZ InChI InChI 1.03 InChI=1S/C3H3IN2/c4-3-1-5-6-2-3/h1-2H,(H,5,6)
PYZ InChIKey InChI 1.03 LLNQWPTUJJYTTE-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PYZ "SYSTEMATIC NAME" ACDLabs 10.04 4-iodo-1H-pyrazole
PYZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 4-iodo-1H-pyrazole
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PYZ 'Create component' 1999-07-08 RCSB
PYZ 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id PYZ
_pdbe_chem_comp_drugbank_details.drugbank_id DB02721
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 4-Iodopyrazole
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 3469-69-0
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id PYZ
_pdbe_chem_comp_synonyms.name 4-Iodopyrazole
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id PYZ
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02721
_pdbe_chem_comp_drugbank_classification.parent 'Aryl iodides'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Aryl halides'
_pdbe_chem_comp_drugbank_classification.superclass 'Organohalogen compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as aryl iodides. These are organic compounds containing the acyl iodide functional group.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
PYZ DB02721 'Alcohol dehydrogenase 1C' Humans P00326 unknown 1
PYZ DB02721 'All-trans-retinol dehydrogenase [NAD(+)] ADH1B' Humans P00325 unknown 2
PYZ DB02721 'Alcohol dehydrogenase 1A' Humans P07327 unknown 3
PYZ DB02721 'Mycocyclosin synthase' 'Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)' P9WPP7 unknown 4
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PYZ N1 N 5.845 -0.414 1
PYZ N2 N 4.632 -1.296 2
PYZ C3 C 3.418 -0.414 3
PYZ C4 C 3.882 1.012 4
PYZ I4 I 3.000 2.226 5
PYZ C5 C 5.382 1.012 6
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PYZ N1 N2 SINGLE NONE 1
PYZ N1 C5 SINGLE NONE 2
PYZ N2 C3 DOUBLE NONE 3
PYZ C3 C4 SINGLE NONE 4
PYZ C4 I4 SINGLE NONE 5
PYZ C4 C5 DOUBLE NONE 6
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PYZ MurckoScaffold S1 scaffold 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
PYZ pyrazole F1 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PYZ N1 S1 1
PYZ N2 S1 1
PYZ C3 S1 1
PYZ C4 S1 1
PYZ C5 S1 1
PYZ C3 F1 1
PYZ C4 F1 1
PYZ C5 F1 1
PYZ N1 F1 1
PYZ N2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id PYZ
_pdbe_chem_comp_rdkit_properties.exactmw 193.934
_pdbe_chem_comp_rdkit_properties.amw 193.975
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 6
_pdbe_chem_comp_rdkit_properties.NumAtoms 9
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 53.363
_pdbe_chem_comp_rdkit_properties.tpsa 28.680
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.014
_pdbe_chem_comp_rdkit_properties.CrippenMR 31.305
_pdbe_chem_comp_rdkit_properties.chi0v 4.930
_pdbe_chem_comp_rdkit_properties.chi1v 2.415
_pdbe_chem_comp_rdkit_properties.chi2v 0.829
_pdbe_chem_comp_rdkit_properties.chi3v 0.829
_pdbe_chem_comp_rdkit_properties.chi4v 0.379
_pdbe_chem_comp_rdkit_properties.chi0n 5.772
_pdbe_chem_comp_rdkit_properties.chi1n 2.783
_pdbe_chem_comp_rdkit_properties.chi2n 0.346
_pdbe_chem_comp_rdkit_properties.chi3n 0.346
_pdbe_chem_comp_rdkit_properties.chi4n 0.163
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.060
_pdbe_chem_comp_rdkit_properties.kappa1 1.814
_pdbe_chem_comp_rdkit_properties.kappa2 1.592
_pdbe_chem_comp_rdkit_properties.kappa3 0.707
_pdbe_chem_comp_rdkit_properties.Phi 0.481
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PYZ UniChem DrugBank DB02721
PYZ UniChem ChEBI 45260
PYZ UniChem ZINC ZINC000002046962
PYZ UniChem fdasrs F33UJD465Q
PYZ UniChem NMRShiftDB 20209134
PYZ UniChem ACTor 3469-69-0
PYZ UniChem 'EPA CompTox Dashboard' DTXSID30188244
PYZ UniChem BRENDA 16621
PYZ UniChem ChemicalBook CB0456472
PYZ UniChem 'Probes And Drugs' PD060015
PYZ UniChem CCDC PEKWIN
PYZ UniChem Nikkaji J216.139G
PYZ UniChem eMolecules 488841
PYZ UniChem SureChEMBL SCHEMBL71959
PYZ UniChem 'PubChem TPHARMA' 16557582
PYZ UniChem PubChem 77022
PYZ UniChem Mcule MCULE-4755201793
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PYZ N1 -1.359 -0.127 0.028 ETKDGv3 1
PYZ N2 -0.691 -1.355 0.043 ETKDGv3 2
PYZ C3 0.579 -1.115 0.014 ETKDGv3 3
PYZ C4 0.816 0.328 -0.023 ETKDGv3 4
PYZ I4 2.676 1.311 -0.079 ETKDGv3 5
PYZ C5 -0.378 0.896 -0.013 ETKDGv3 6
PYZ HN1 -2.396 -0.008 0.045 ETKDGv3 7
PYZ H3 1.336 -1.888 0.017 ETKDGv3 8
PYZ H5 -0.583 1.958 -0.032 ETKDGv3 9
#