data_PS1
#
_chem_comp.id PS1
_chem_comp.name 1,2-DIDECANOYL-SN-GLYCERO-3-[PHOSPHO-L-SERINE]
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H49 N O10 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge -1
_chem_comp.pdbx_initial_date 2004-08-02
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 566.642
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PS1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1TB1
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PS1 O1 O1 O -1 1 N N N N N N 11.623 29.573 9.739 -0.870 -3.544 0.888 O1 PS1 1
PS1 O2 O2 O 0 1 N N N N N N 10.580 27.784 10.547 1.194 -3.333 2.323 O2 PS1 2
PS1 P1 P1 P 0 1 N N N N N N 11.766 28.007 9.524 0.429 -2.741 1.118 P1 PS1 3
PS1 O3 O3 O 0 1 N N N N N N 13.176 27.430 10.012 1.353 -2.826 -0.198 O3 PS1 4
PS1 C1 C1 C 0 1 N N N N N N 13.208 26.254 10.812 1.545 -4.214 -0.479 C1 PS1 5
PS1 C2 C2 C 0 1 N N S N N N 13.827 26.554 12.183 2.419 -4.366 -1.725 C2 PS1 6
PS1 C3 C3 C 0 1 N N N N N N 13.238 27.804 12.802 2.723 -5.825 -1.950 C3 PS1 7
PS1 O4 O4 O 0 1 N N N N N N 12.077 28.139 12.782 2.096 -6.453 -2.771 O4 PS1 8
PS1 O5 O5 O 0 1 N N N N N N 14.179 28.542 13.403 3.690 -6.427 -1.240 O5 PS1 9
PS1 N1 N1 N 0 1 N N N N N N 13.616 25.409 13.041 1.707 -3.828 -2.891 N1 PS1 10
PS1 O6 O6 O 0 1 N N N N N N 11.449 27.503 8.043 0.063 -1.202 1.418 O6 PS1 11
PS1 C4 C4 C 0 1 N N N N N N 12.543 27.259 7.164 -0.848 -1.202 2.519 C4 PS1 12
PS1 C5 C5 C 0 1 N N R N N N 12.883 25.764 7.251 -1.238 0.238 2.857 C5 PS1 13
PS1 C6 C6 C 0 1 N N N N N N 11.820 24.772 6.749 0.025 1.063 3.111 C6 PS1 14
PS1 O7 O7 O 0 1 N N N N N N 12.034 24.509 5.381 0.911 0.957 1.965 O7 PS1 15
PS1 C7 C7 C 0 1 N N N N N N 11.533 23.503 4.644 2.087 1.602 1.964 C7 PS1 16
PS1 O8 O8 O 0 1 N N N N N N 11.715 23.475 3.449 2.410 2.272 2.916 O8 PS1 17
PS1 C8 C8 C 0 1 N N N N N N 10.773 22.437 5.420 3.006 1.492 0.774 C8 PS1 18
PS1 C9 C9 C 0 1 N N N N N N 11.294 21.008 5.188 4.270 2.317 1.028 C9 PS1 19
PS1 C10 C10 C 0 1 N N N N N N 12.030 20.403 6.394 5.202 2.205 -0.180 C10 PS1 20
PS1 C11 C11 C 0 1 N N N N N N 12.859 21.434 7.183 6.466 3.030 0.073 C11 PS1 21
PS1 C12 C12 C 0 1 N N N N N N 14.039 20.815 7.949 7.399 2.918 -1.134 C12 PS1 22
PS1 C13 C13 C 0 1 N N N N N N 15.125 21.849 8.279 8.662 3.742 -0.881 C13 PS1 23
PS1 C14 C14 C 0 1 N N N N N N 16.244 21.908 7.224 9.595 3.631 -2.089 C14 PS1 24
PS1 C15 C15 C 0 1 N N N N N N 15.785 22.195 5.781 10.859 4.455 -1.835 C15 PS1 25
PS1 C16 C16 C 0 1 N N N N N N 15.506 20.929 4.949 11.791 4.343 -3.043 C16 PS1 26
PS1 O9 O9 O 0 1 N N N N N N 14.194 25.459 6.819 -1.977 0.813 1.747 O9 PS1 27
PS1 C17 C17 C 0 1 N N N N N N 14.963 25.939 5.821 -3.313 0.700 1.700 C17 PS1 28
PS1 O10 O10 O 0 1 N N N N N N 16.076 25.497 5.640 -3.902 0.120 2.581 O10 PS1 29
PS1 C18 C18 C 0 1 N N N N N N 14.413 27.039 4.931 -4.080 1.296 0.548 C18 PS1 30
PS1 C19 C19 C 0 1 N N N N N N 14.808 28.454 5.384 -5.574 1.028 0.736 C19 PS1 31
PS1 C20 C20 C 0 1 N N N N N N 15.282 29.367 4.241 -6.352 1.634 -0.434 C20 PS1 32
PS1 C21 C21 C 0 1 N N N N N N 14.472 30.672 4.127 -7.847 1.365 -0.246 C21 PS1 33
PS1 C22 C22 C 0 1 N N N N N N 13.069 30.479 3.530 -8.625 1.971 -1.416 C22 PS1 34
PS1 C23 C23 C 0 1 N N N N N N 12.927 31.133 2.146 -10.119 1.702 -1.228 C23 PS1 35
PS1 C24 C24 C 0 1 N N N N N N 12.074 32.414 2.156 -10.898 2.308 -2.398 C24 PS1 36
PS1 C25 C25 C 0 1 N N N N N N 12.837 33.718 2.457 -12.392 2.040 -2.210 C25 PS1 37
PS1 C26 C26 C 0 1 N N N N N N 12.073 34.754 3.300 -13.170 2.645 -3.379 C26 PS1 38
PS1 H1 H1 H 0 1 N N N N N N 12.175 25.858 10.899 2.035 -4.692 0.370 H1 PS1 39
PS1 H2 H2 H 0 1 N N N N N N 13.771 25.470 10.264 0.578 -4.687 -0.653 H2 PS1 40
PS1 H3 H3 H 0 1 N N N N N N 14.914 26.699 12.104 3.351 -3.819 -1.584 H3 PS1 41
PS1 H4 H4 H 0 1 N N N N N N 14.570 28.174 14.209 3.885 -7.363 -1.384 H4 PS1 42
PS1 H5 H5 H 0 1 N N N N N N 14.495 25.074 13.423 2.271 -4.042 -3.700 H5 PS1 43
PS1 H6 H6 H 0 1 N N N N N N 13.069 25.700 13.849 0.855 -4.362 -2.983 H6 PS1 44
PS1 H7 H7 H 0 1 N N N N N N 12.267 27.574 6.137 -0.372 -1.662 3.385 H7 PS1 45
PS1 H8 H8 H 0 1 N N N N N N 13.396 27.909 7.447 -1.741 -1.767 2.252 H8 PS1 46
PS1 H9 H9 H 0 1 N N N N N N 12.977 25.554 8.326 -1.862 0.246 3.751 H9 PS1 47
PS1 H10 H10 H 0 1 N N N N N N 10.787 25.157 6.878 0.533 0.686 3.998 H10 PS1 48
PS1 H11 H11 H 0 1 N N N N N N 11.841 23.810 7.302 -0.247 2.107 3.264 H11 PS1 49
PS1 H12 H12 H 0 1 N N N N N N 10.814 22.680 6.502 2.498 1.869 -0.113 H12 PS1 50
PS1 H13 H13 H 0 1 N N N N N N 9.698 22.493 5.152 3.278 0.448 0.621 H13 PS1 51
PS1 H14 H14 H 0 1 N N N N N N 11.968 21.002 4.306 4.778 1.940 1.915 H14 PS1 52
PS1 H15 H15 H 0 1 N N N N N N 10.446 20.349 4.908 3.997 3.361 1.181 H15 PS1 53
PS1 H16 H16 H 0 1 N N N N N N 11.297 19.918 7.069 4.694 2.582 -1.068 H16 PS1 54
PS1 H17 H17 H 0 1 N N N N N N 12.690 19.581 6.049 5.475 1.161 -0.333 H17 PS1 55
PS1 H18 H18 H 0 1 N N N N N N 12.198 21.973 7.894 6.974 2.653 0.961 H18 PS1 56
PS1 H19 H19 H 0 1 N N N N N N 13.235 22.215 6.491 6.194 4.074 0.227 H19 PS1 57
PS1 H20 H20 H 0 1 N N N N N N 13.674 20.342 8.884 6.891 3.295 -2.022 H20 PS1 58
PS1 H21 H21 H 0 1 N N N N N N 14.477 19.984 7.358 7.671 1.874 -1.288 H21 PS1 59
PS1 H22 H22 H 0 1 N N N N N N 15.564 21.625 9.274 9.170 3.365 0.007 H22 PS1 60
PS1 H23 H23 H 0 1 N N N N N N 14.663 22.853 8.389 8.390 4.787 -0.728 H23 PS1 61
PS1 H24 H24 H 0 1 N N N N N N 16.983 22.680 7.526 9.087 4.008 -2.976 H24 PS1 62
PS1 H25 H25 H 0 1 N N N N N N 16.804 20.951 7.242 9.867 2.586 -2.242 H25 PS1 63
PS1 H26 H26 H 0 1 N N N N N N 16.555 22.810 5.268 11.367 4.078 -0.948 H26 PS1 64
PS1 H27 H27 H 0 1 N N N N N N 14.876 22.830 5.804 10.586 5.499 -1.682 H27 PS1 65
PS1 H28 H28 H 0 1 N N N N N N 15.305 20.069 5.623 12.692 4.931 -2.862 H28 PS1 66
PS1 H29 H29 H 0 1 N N N N N N 16.385 20.690 4.314 12.064 3.299 -3.196 H29 PS1 67
PS1 H30 H30 H 0 1 N N N N N N 14.623 21.090 4.296 11.283 4.721 -3.930 H30 PS1 68
PS1 H31 H31 H 0 1 N N N N N N 14.755 26.869 3.889 -3.905 2.372 0.513 H31 PS1 69
PS1 H32 H32 H 0 1 N N N N N N 13.307 26.952 4.888 -3.744 0.844 -0.385 H32 PS1 70
PS1 H33 H33 H 0 1 N N N N N N 15.604 28.385 6.153 -5.749 -0.047 0.770 H33 PS1 71
PS1 H34 H34 H 0 1 N N N N N N 13.947 28.928 5.901 -5.910 1.481 1.669 H34 PS1 72
PS1 H35 H35 H 0 1 N N N N N N 16.356 29.606 4.381 -6.178 2.709 -0.469 H35 PS1 73
PS1 H36 H36 H 0 1 N N N N N N 15.234 28.814 3.280 -6.017 1.181 -1.367 H36 PS1 74
PS1 H37 H37 H 0 1 N N N N N N 15.037 31.405 3.514 -8.021 0.290 -0.212 H37 PS1 75
PS1 H38 H38 H 0 1 N N N N N N 14.384 31.141 5.130 -8.183 1.818 0.687 H38 PS1 76
PS1 H39 H39 H 0 1 N N N N N N 12.836 29.396 3.459 -8.451 3.046 -1.450 H39 PS1 77
PS1 H40 H40 H 0 1 N N N N N N 12.304 30.893 4.221 -8.289 1.518 -2.349 H40 PS1 78
PS1 H41 H41 H 0 1 N N N N N N 12.491 30.400 1.434 -10.294 0.627 -1.193 H41 PS1 79
PS1 H42 H42 H 0 1 N N N N N N 13.935 31.360 1.740 -10.455 2.155 -0.295 H42 PS1 80
PS1 H43 H43 H 0 1 N N N N N N 11.563 32.513 1.176 -10.723 3.384 -2.432 H43 PS1 81
PS1 H44 H44 H 0 1 N N N N N N 11.257 32.296 2.896 -10.562 1.855 -3.331 H44 PS1 82
PS1 H45 H45 H 0 1 N N N N N N 13.141 34.188 1.497 -12.567 0.964 -2.175 H45 PS1 83
PS1 H46 H46 H 0 1 N N N N N N 13.790 33.469 2.969 -12.728 2.492 -1.277 H46 PS1 84
PS1 H47 H47 H 0 1 N N N N N N 11.178 34.287 3.758 -14.235 2.454 -3.245 H47 PS1 85
PS1 H48 H48 H 0 1 N N N N N N 11.750 35.601 2.659 -12.996 3.721 -3.414 H48 PS1 86
PS1 H49 H49 H 0 1 N N N N N N 12.729 35.144 4.108 -12.834 2.193 -4.312 H49 PS1 87
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PS1 O1 P1 SING N N 1
PS1 O2 P1 DOUB N N 2
PS1 P1 O3 SING N N 3
PS1 P1 O6 SING N N 4
PS1 O3 C1 SING N N 5
PS1 C1 C2 SING N N 6
PS1 C1 H1 SING N N 7
PS1 C1 H2 SING N N 8
PS1 C2 C3 SING N N 9
PS1 C2 N1 SING N N 10
PS1 C2 H3 SING N N 11
PS1 C3 O4 DOUB N N 12
PS1 C3 O5 SING N N 13
PS1 O5 H4 SING N N 14
PS1 N1 H5 SING N N 15
PS1 N1 H6 SING N N 16
PS1 O6 C4 SING N N 17
PS1 C4 C5 SING N N 18
PS1 C4 H7 SING N N 19
PS1 C4 H8 SING N N 20
PS1 C5 C6 SING N N 21
PS1 C5 O9 SING N N 22
PS1 C5 H9 SING N N 23
PS1 C6 O7 SING N N 24
PS1 C6 H10 SING N N 25
PS1 C6 H11 SING N N 26
PS1 O7 C7 SING N N 27
PS1 C7 O8 DOUB N N 28
PS1 C7 C8 SING N N 29
PS1 C8 C9 SING N N 30
PS1 C8 H12 SING N N 31
PS1 C8 H13 SING N N 32
PS1 C9 C10 SING N N 33
PS1 C9 H14 SING N N 34
PS1 C9 H15 SING N N 35
PS1 C10 C11 SING N N 36
PS1 C10 H16 SING N N 37
PS1 C10 H17 SING N N 38
PS1 C11 C12 SING N N 39
PS1 C11 H18 SING N N 40
PS1 C11 H19 SING N N 41
PS1 C12 C13 SING N N 42
PS1 C12 H20 SING N N 43
PS1 C12 H21 SING N N 44
PS1 C13 C14 SING N N 45
PS1 C13 H22 SING N N 46
PS1 C13 H23 SING N N 47
PS1 C14 C15 SING N N 48
PS1 C14 H24 SING N N 49
PS1 C14 H25 SING N N 50
PS1 C15 C16 SING N N 51
PS1 C15 H26 SING N N 52
PS1 C15 H27 SING N N 53
PS1 C16 H28 SING N N 54
PS1 C16 H29 SING N N 55
PS1 C16 H30 SING N N 56
PS1 O9 C17 SING N N 57
PS1 C17 O10 DOUB N N 58
PS1 C17 C18 SING N N 59
PS1 C18 C19 SING N N 60
PS1 C18 H31 SING N N 61
PS1 C18 H32 SING N N 62
PS1 C19 C20 SING N N 63
PS1 C19 H33 SING N N 64
PS1 C19 H34 SING N N 65
PS1 C20 C21 SING N N 66
PS1 C20 H35 SING N N 67
PS1 C20 H36 SING N N 68
PS1 C21 C22 SING N N 69
PS1 C21 H37 SING N N 70
PS1 C21 H38 SING N N 71
PS1 C22 C23 SING N N 72
PS1 C22 H39 SING N N 73
PS1 C22 H40 SING N N 74
PS1 C23 C24 SING N N 75
PS1 C23 H41 SING N N 76
PS1 C23 H42 SING N N 77
PS1 C24 C25 SING N N 78
PS1 C24 H43 SING N N 79
PS1 C24 H44 SING N N 80
PS1 C25 C26 SING N N 81
PS1 C25 H45 SING N N 82
PS1 C25 H46 SING N N 83
PS1 C26 H47 SING N N 84
PS1 C26 H48 SING N N 85
PS1 C26 H49 SING N N 86
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PS1 SMILES ACDLabs 10.04 O=C(OCC(OC(=O)CCCCCCCCC)COP([O-])(=O)OCC(N)C(=O)O)CCCCCCCCC
PS1 SMILES_CANONICAL CACTVS 3.341 CCCCCCCCCC(=O)OC[C@H](CO[P]([O-])(=O)OC[C@H](N)C(O)=O)OC(=O)CCCCCCCCC
PS1 SMILES CACTVS 3.341 CCCCCCCCCC(=O)OC[CH](CO[P]([O-])(=O)OC[CH](N)C(O)=O)OC(=O)CCCCCCCCC
PS1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCCCCCCCC(=O)OC[C@H](CO[P@](=O)([O-])OC[C@@H](C(=O)O)N)OC(=O)CCCCCCCCC
PS1 SMILES "OpenEye OEToolkits" 1.5.0 CCCCCCCCCC(=O)OCC(COP(=O)([O-])OCC(C(=O)O)N)OC(=O)CCCCCCCCC
PS1 InChI InChI 1.03 InChI=1S/C26H50NO10P/c1-3-5-7-9-11-13-15-17-24(28)34-19-22(20-35-38(32,33)36-21-23(27)26(30)31)37-25(29)18-16-14-12-10-8-6-4-2/h22-23H,3-21,27H2,1-2H3,(H,30,31)(H,32,33)/p-1/t22-,23+/m1/s1
PS1 InChIKey InChI 1.03 LRIPXDCMGANCAE-PKTZIBPZSA-M
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PS1 "SYSTEMATIC NAME" ACDLabs 10.04 O-({[(2R)-2,3-bis(decanoyloxy)propyl]oxy}phosphinato)-L-serine
PS1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S)-2-amino-3-hydroxy-3-oxo-propyl] [(2R)-2,3-di(decanoyloxy)propyl] phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PS1 'Create component' 2004-08-02 RCSB
PS1 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PS1 O1 O 9.551 -4.468 1
PS1 O2 O 11.051 -7.066 2
PS1 P1 P 10.301 -5.768 3
PS1 O3 O 9.002 -6.518 4
PS1 C1 C 7.702 -5.768 5
PS1 C2 C 6.404 -6.518 6
PS1 C3 C 5.104 -5.768 7
PS1 O4 O 3.805 -6.518 8
PS1 O5 O 5.104 -4.268 9
PS1 N1 N 6.404 -8.018 10
PS1 O6 O 11.600 -5.018 11
PS1 C4 C 12.899 -5.768 12
PS1 C5 C 14.198 -5.018 13
PS1 C6 C 14.198 -3.518 14
PS1 O7 O 15.497 -2.768 15
PS1 C7 C 15.497 -1.268 16
PS1 O8 O 14.198 -0.517 17
PS1 C8 C 16.796 -0.517 18
PS1 C9 C 16.796 0.983 19
PS1 C10 C 18.095 1.732 20
PS1 C11 C 18.095 3.232 21
PS1 C12 C 19.394 3.982 22
PS1 C13 C 19.394 5.482 23
PS1 C14 C 20.693 6.232 24
PS1 C15 C 20.693 7.732 25
PS1 C16 C 21.992 8.482 26
PS1 O9 O 15.497 -5.768 27
PS1 C17 C 16.796 -5.018 28
PS1 O10 O 16.796 -3.518 29
PS1 C18 C 18.095 -5.768 30
PS1 C19 C 19.394 -5.018 31
PS1 C20 C 20.693 -5.768 32
PS1 C21 C 21.992 -5.018 33
PS1 C22 C 23.291 -5.768 34
PS1 C23 C 24.590 -5.018 35
PS1 C24 C 25.889 -5.768 36
PS1 C25 C 27.188 -5.018 37
PS1 C26 C 28.487 -5.768 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PS1 P1 O1 SINGLE BEGINDASH 1
PS1 O2 P1 DOUBLE NONE 2
PS1 P1 O3 SINGLE NONE 3
PS1 P1 O6 SINGLE NONE 4
PS1 O3 C1 SINGLE NONE 5
PS1 C1 C2 SINGLE NONE 6
PS1 C2 C3 SINGLE NONE 7
PS1 C2 N1 SINGLE BEGINDASH 8
PS1 C3 O4 DOUBLE NONE 9
PS1 C3 O5 SINGLE NONE 10
PS1 O6 C4 SINGLE NONE 11
PS1 C5 C4 SINGLE BEGINWEDGE 12
PS1 C5 C6 SINGLE NONE 13
PS1 C5 O9 SINGLE NONE 14
PS1 C6 O7 SINGLE NONE 15
PS1 O7 C7 SINGLE NONE 16
PS1 C7 O8 DOUBLE NONE 17
PS1 C7 C8 SINGLE NONE 18
PS1 C8 C9 SINGLE NONE 19
PS1 C9 C10 SINGLE NONE 20
PS1 C10 C11 SINGLE NONE 21
PS1 C11 C12 SINGLE NONE 22
PS1 C12 C13 SINGLE NONE 23
PS1 C13 C14 SINGLE NONE 24
PS1 C14 C15 SINGLE NONE 25
PS1 C15 C16 SINGLE NONE 26
PS1 O9 C17 SINGLE NONE 27
PS1 C17 O10 DOUBLE NONE 28
PS1 C17 C18 SINGLE NONE 29
PS1 C18 C19 SINGLE NONE 30
PS1 C19 C20 SINGLE NONE 31
PS1 C20 C21 SINGLE NONE 32
PS1 C21 C22 SINGLE NONE 33
PS1 C22 C23 SINGLE NONE 34
PS1 C23 C24 SINGLE NONE 35
PS1 C24 C25 SINGLE NONE 36
PS1 C25 C26 SINGLE NONE 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PS1 peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
PS1 phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PS1 O4 F1 1
PS1 C3 F1 1
PS1 C2 F1 1
PS1 N1 F1 1
PS1 O1 F2 1
PS1 P1 F2 1
PS1 O2 F2 1
PS1 O3 F2 1
PS1 O6 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id PS1
_pdbe_chem_comp_rdkit_properties.exactmw 566.310
_pdbe_chem_comp_rdkit_properties.amw 566.649
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 29
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 87
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.885
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 296.326
_pdbe_chem_comp_rdkit_properties.tpsa 174.510
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.636
_pdbe_chem_comp_rdkit_properties.CrippenMR 141.181
_pdbe_chem_comp_rdkit_properties.chi0v 18.871
_pdbe_chem_comp_rdkit_properties.chi1v 9.956
_pdbe_chem_comp_rdkit_properties.chi2v 2.838
_pdbe_chem_comp_rdkit_properties.chi3v 2.838
_pdbe_chem_comp_rdkit_properties.chi4v 1.463
_pdbe_chem_comp_rdkit_properties.chi0n 66.977
_pdbe_chem_comp_rdkit_properties.chi1n 32.798
_pdbe_chem_comp_rdkit_properties.chi2n 2.208
_pdbe_chem_comp_rdkit_properties.chi3n 2.208
_pdbe_chem_comp_rdkit_properties.chi4n 1.033
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.520
_pdbe_chem_comp_rdkit_properties.kappa1 6.434
_pdbe_chem_comp_rdkit_properties.kappa2 23.375
_pdbe_chem_comp_rdkit_properties.kappa3 22.463
_pdbe_chem_comp_rdkit_properties.Phi 3.958
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PS1 UniChem PDBe PS1
PS1 UniChem SwissLipids SLM:000005395
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PS1 O1 -0.109 -3.472 3.075 ETKDGv3 1
PS1 O2 -1.297 -1.536 4.369 ETKDGv3 2
PS1 P1 -1.115 -2.114 2.983 ETKDGv3 3
PS1 O3 -2.643 -2.590 2.395 ETKDGv3 4
PS1 C1 -2.530 -2.862 1.017 ETKDGv3 5
PS1 C2 -3.840 -3.488 0.522 ETKDGv3 6
PS1 C3 -3.850 -3.622 -0.979 ETKDGv3 7
PS1 O4 -2.897 -4.191 -1.576 ETKDGv3 8
PS1 O5 -4.935 -3.143 -1.706 ETKDGv3 9
PS1 N1 -4.052 -4.790 1.159 ETKDGv3 10
PS1 O6 -0.420 -0.948 1.948 ETKDGv3 11
PS1 C4 0.778 -0.487 2.530 ETKDGv3 12
PS1 C5 1.468 0.516 1.587 ETKDGv3 13
PS1 C6 0.592 1.749 1.335 ETKDGv3 14
PS1 O7 -0.553 1.380 0.575 ETKDGv3 15
PS1 C7 -1.585 2.267 0.265 ETKDGv3 16
PS1 O8 -1.526 3.477 0.617 ETKDGv3 17
PS1 C8 -2.795 1.747 -0.441 ETKDGv3 18
PS1 C9 -3.741 1.064 0.559 ETKDGv3 19
PS1 C10 -4.772 0.158 -0.128 ETKDGv3 20
PS1 C11 -5.853 0.947 -0.885 ETKDGv3 21
PS1 C12 -6.759 0.040 -1.733 ETKDGv3 22
PS1 C13 -7.667 -0.863 -0.880 ETKDGv3 23
PS1 C14 -8.569 -1.768 -1.735 ETKDGv3 24
PS1 C15 -9.716 -0.998 -2.406 ETKDGv3 25
PS1 C16 -10.663 -1.948 -3.134 ETKDGv3 26
PS1 O9 2.702 0.948 2.160 ETKDGv3 27
PS1 C17 3.867 0.173 2.165 ETKDGv3 28
PS1 O10 3.892 -0.960 1.611 ETKDGv3 29
PS1 C18 5.109 0.718 2.801 ETKDGv3 30
PS1 C19 5.718 1.854 1.969 ETKDGv3 31
PS1 C20 6.270 1.357 0.624 ETKDGv3 32
PS1 C21 6.938 2.502 -0.151 ETKDGv3 33
PS1 C22 7.359 2.095 -1.574 ETKDGv3 34
PS1 C23 8.386 0.947 -1.649 ETKDGv3 35
PS1 C24 9.692 1.188 -0.869 ETKDGv3 36
PS1 C25 10.473 2.407 -1.379 ETKDGv3 37
PS1 C26 11.829 2.519 -0.688 ETKDGv3 38
PS1 H1 -1.694 -3.570 0.809 ETKDGv3 39
PS1 H2 -2.355 -1.913 0.460 ETKDGv3 40
PS1 H3 -4.675 -2.815 0.816 ETKDGv3 41
PS1 H4 -4.965 -3.229 -2.714 ETKDGv3 42
PS1 H5 -3.328 -5.466 0.822 ETKDGv3 43
PS1 H6 -4.986 -5.158 0.862 ETKDGv3 44
PS1 H7 1.476 -1.336 2.704 ETKDGv3 45
PS1 H8 0.576 0.022 3.500 ETKDGv3 46
PS1 H9 1.667 0.027 0.607 ETKDGv3 47
PS1 H10 1.176 2.505 0.767 ETKDGv3 48
PS1 H11 0.278 2.197 2.304 ETKDGv3 49
PS1 H12 -3.316 2.584 -0.953 ETKDGv3 50
PS1 H13 -2.462 1.020 -1.213 ETKDGv3 51
PS1 H14 -3.145 0.427 1.250 ETKDGv3 52
PS1 H15 -4.258 1.832 1.174 ETKDGv3 53
PS1 H16 -4.251 -0.540 -0.819 ETKDGv3 54
PS1 H17 -5.259 -0.447 0.665 ETKDGv3 55
PS1 H18 -5.368 1.669 -1.576 ETKDGv3 56
PS1 H19 -6.468 1.529 -0.165 ETKDGv3 57
PS1 H20 -6.134 -0.583 -2.411 ETKDGv3 58
PS1 H21 -7.388 0.698 -2.368 ETKDGv3 59
PS1 H22 -7.037 -1.527 -0.252 ETKDGv3 60
PS1 H23 -8.290 -0.243 -0.199 ETKDGv3 61
PS1 H24 -9.003 -2.545 -1.069 ETKDGv3 62
PS1 H25 -7.959 -2.288 -2.506 ETKDGv3 63
PS1 H26 -10.293 -0.436 -1.639 ETKDGv3 64
PS1 H27 -9.312 -0.275 -3.145 ETKDGv3 65
PS1 H28 -11.476 -1.366 -3.617 ETKDGv3 66
PS1 H29 -11.118 -2.665 -2.417 ETKDGv3 67
PS1 H30 -10.115 -2.512 -3.918 ETKDGv3 68
PS1 H31 5.857 -0.092 2.944 ETKDGv3 69
PS1 H32 4.844 1.111 3.806 ETKDGv3 70
PS1 H33 4.952 2.642 1.796 ETKDGv3 71
PS1 H34 6.546 2.308 2.555 ETKDGv3 72
PS1 H35 5.441 0.938 0.014 ETKDGv3 73
PS1 H36 7.013 0.554 0.817 ETKDGv3 74
PS1 H37 7.812 2.888 0.414 ETKDGv3 75
PS1 H38 6.215 3.343 -0.242 ETKDGv3 76
PS1 H39 7.766 2.987 -2.096 ETKDGv3 77
PS1 H40 6.453 1.788 -2.140 ETKDGv3 78
PS1 H41 8.637 0.771 -2.718 ETKDGv3 79
PS1 H42 7.918 0.009 -1.281 ETKDGv3 80
PS1 H43 9.479 1.296 0.215 ETKDGv3 81
PS1 H44 10.325 0.281 -0.987 ETKDGv3 82
PS1 H45 9.901 3.337 -1.176 ETKDGv3 83
PS1 H46 10.634 2.321 -2.476 ETKDGv3 84
PS1 H47 11.695 2.622 0.410 ETKDGv3 85
PS1 H48 12.446 1.619 -0.900 ETKDGv3 86
PS1 H49 12.367 3.414 -1.066 ETKDGv3 87
#