data_PNY # _chem_comp.id PNY _chem_comp.name (2R)-2,4-dihydroxy-3,3-dimethyl-N-{3-oxo-3-[(2-sulfanylethyl)amino]propyl}butanamide _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H22 N2 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "pantetheine; (R)-2,4-Dihydroxy-N-(3-((2-mercaptoethyl)amino)-3-oxopropyl)-3,3-dimethylbutanamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-07-06 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 278.368 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PNY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ND7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PNY CAA CAA C 0 1 N N N N N N -9.148 11.816 7.862 -4.282 -0.733 1.174 CAA PNY 1 PNY CAB CAB C 0 1 N N N N N N -11.599 11.784 7.227 -3.269 -1.703 -0.894 CAB PNY 2 PNY OAC OAC O 0 1 N N N N N N -10.964 16.255 1.600 2.499 1.158 0.864 OAC PNY 3 PNY OAD OAD O 0 1 N N N N N N -10.317 14.710 4.556 -2.367 1.814 0.835 OAD PNY 4 PNY OAE OAE O 0 1 N N N N N N -7.865 12.352 7.465 -4.741 -2.030 1.558 OAE PNY 5 PNY CAF CAF C 0 1 N N N N N N -10.239 12.545 7.089 -4.229 -0.641 -0.352 CAF PNY 6 PNY SAG SAG S 0 1 N N N N N N -6.255 17.315 1.165 7.559 -0.336 0.208 SAG PNY 7 PNY CAH CAH C 0 1 N N N N N N -7.635 16.286 1.823 5.953 -0.779 -0.509 CAH PNY 8 PNY CAI CAI C 0 1 N N N N N N -10.351 13.977 7.630 -5.628 -0.878 -0.926 CAI PNY 9 PNY CAJ CAJ C 0 1 N N N N N N -8.316 15.650 0.636 4.852 0.056 0.148 CAJ PNY 10 PNY CAK CAK C 0 1 N N N N N N -12.253 13.704 2.913 -0.001 0.779 0.059 CAK PNY 11 PNY CAL CAL C 0 1 N N N N N N -11.537 13.851 1.570 1.100 -0.056 -0.599 CAL PNY 12 PNY NAM NAM N 0 1 N N N N N N -9.376 14.720 0.994 3.555 -0.301 -0.431 NAM PNY 13 PNY NAN NAN N 0 1 N N N N N N -11.466 12.908 3.871 -1.298 0.421 -0.521 NAN PNY 14 PNY CAO CAO C 0 1 N N N N N N -10.599 15.079 1.403 2.434 0.311 -0.002 CAO PNY 15 PNY CAP CAP C 0 1 N N N N N N -10.553 13.501 4.639 -2.419 1.034 -0.091 CAP PNY 16 PNY CAQ CAQ C 0 1 N N R N N N -9.712 12.625 5.630 -3.737 0.748 -0.763 CAQ PNY 17 PNY OAR OAR O 0 1 N N N N N N -9.466 11.326 5.136 -4.697 1.730 -0.366 OAR PNY 18 PNY HAA HAA H 0 1 N N N N N N -9.188 10.740 7.636 -4.965 0.023 1.560 HAA PNY 19 PNY HAAA HAAA H 0 0 N N N N N N -9.295 11.964 8.942 -3.285 -0.564 1.583 HAAA PNY 20 PNY HAB HAB H 0 1 N N N N N N -12.378 12.320 6.665 -3.683 -2.694 -0.710 HAB PNY 21 PNY HABA HABA H 0 0 N N N N N N -11.492 10.766 6.825 -3.136 -1.559 -1.966 HABA PNY 22 PNY HABB HABB H 0 0 N N N N N N -11.883 11.731 8.288 -2.306 -1.612 -0.392 HABB PNY 23 PNY HOAE HOAE H 0 0 N N N N N N -7.174 11.906 7.940 -4.799 -2.160 2.514 HOAE PNY 24 PNY HSAG HSAG H 0 0 N N N N N N -5.744 17.809 2.253 8.416 -1.134 -0.453 HSAG PNY 25 PNY HAH HAH H 0 1 N N N N N N -7.245 15.511 2.499 5.967 -0.581 -1.581 HAH PNY 26 PNY HAHA HAHA H 0 0 N N N N N N -8.346 16.913 2.380 5.757 -1.837 -0.338 HAHA PNY 27 PNY HAI HAI H 0 1 N N N N N N -11.136 14.517 7.080 -6.298 -0.089 -0.585 HAI PNY 28 PNY HAIA HAIA H 0 0 N N N N N N -10.607 13.946 8.699 -5.580 -0.869 -2.015 HAIA PNY 29 PNY HAIB HAIB H 0 0 N N N N N N -9.389 14.495 7.498 -6.001 -1.844 -0.587 HAIB PNY 30 PNY HAJ HAJ H 0 1 N N N N N N -8.758 16.452 0.027 4.838 -0.141 1.220 HAJ PNY 31 PNY HAJA HAJA H 0 0 N N N N N N -7.557 15.097 0.064 5.048 1.115 -0.023 HAJA PNY 32 PNY HAK HAK H 0 1 N N N N N N -12.415 14.706 3.337 -0.015 0.581 1.131 HAK PNY 33 PNY HAKA HAKA H 0 0 N N N N N N -13.217 13.201 2.745 0.195 1.837 -0.112 HAKA PNY 34 PNY HAL HAL H 0 1 N N N N N N -10.918 12.952 1.434 0.904 -1.115 -0.427 HAL PNY 35 PNY HALA HALA H 0 0 N N N N N N -12.315 13.932 0.797 1.114 0.141 -1.671 HALA PNY 36 PNY HNAM HNAM H 0 0 N N N N N N -9.177 13.742 0.930 3.504 -0.978 -1.124 HNAM PNY 37 PNY HNAN HNAN H 0 0 N N N N N N -11.617 11.922 3.945 -1.349 -0.256 -1.213 HNAN PNY 38 PNY HAQ HAQ H 0 1 N N N N N N -8.765 13.182 5.688 -3.609 0.783 -1.845 HAQ PNY 39 PNY HOAR HOAR H 0 0 N N N N N N -9.144 11.382 4.244 -4.862 1.755 0.586 HOAR PNY 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PNY CAA OAE SING N N 1 PNY CAA CAF SING N N 2 PNY CAB CAF SING N N 3 PNY OAC CAO DOUB N N 4 PNY OAD CAP DOUB N N 5 PNY CAF CAI SING N N 6 PNY CAF CAQ SING N N 7 PNY SAG CAH SING N N 8 PNY CAH CAJ SING N N 9 PNY CAJ NAM SING N N 10 PNY CAK CAL SING N N 11 PNY CAK NAN SING N N 12 PNY CAL CAO SING N N 13 PNY NAM CAO SING N N 14 PNY NAN CAP SING N N 15 PNY CAP CAQ SING N N 16 PNY CAQ OAR SING N N 17 PNY CAA HAA SING N N 18 PNY CAA HAAA SING N N 19 PNY CAB HAB SING N N 20 PNY CAB HABA SING N N 21 PNY CAB HABB SING N N 22 PNY OAE HOAE SING N N 23 PNY SAG HSAG SING N N 24 PNY CAH HAH SING N N 25 PNY CAH HAHA SING N N 26 PNY CAI HAI SING N N 27 PNY CAI HAIA SING N N 28 PNY CAI HAIB SING N N 29 PNY CAJ HAJ SING N N 30 PNY CAJ HAJA SING N N 31 PNY CAK HAK SING N N 32 PNY CAK HAKA SING N N 33 PNY CAL HAL SING N N 34 PNY CAL HALA SING N N 35 PNY NAM HNAM SING N N 36 PNY NAN HNAN SING N N 37 PNY CAQ HAQ SING N N 38 PNY OAR HOAR SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PNY SMILES ACDLabs 12.01 O=C(NCCS)CCNC(=O)C(O)C(C)(C)CO PNY SMILES_CANONICAL CACTVS 3.370 CC(C)(CO)[C@@H](O)C(=O)NCCC(=O)NCCS PNY SMILES CACTVS 3.370 CC(C)(CO)[CH](O)C(=O)NCCC(=O)NCCS PNY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 CC(C)(CO)[C@H](C(=O)NCCC(=O)NCCS)O PNY SMILES "OpenEye OEToolkits" 1.7.0 CC(C)(CO)C(C(=O)NCCC(=O)NCCS)O PNY InChI InChI 1.03 InChI=1S/C11H22N2O4S/c1-11(2,7-14)9(16)10(17)13-4-3-8(15)12-5-6-18/h9,14,16,18H,3-7H2,1-2H3,(H,12,15)(H,13,17)/t9-/m0/s1 PNY InChIKey InChI 1.03 ZNXZGRMVNNHPCA-VIFPVBQESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PNY "SYSTEMATIC NAME" ACDLabs 12.01 (2R)-2,4-dihydroxy-3,3-dimethyl-N-{3-oxo-3-[(2-sulfanylethyl)amino]propyl}butanamide PNY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 (2R)-2,4-dihydroxy-3,3-dimethyl-N-[3-oxo-3-(2-sulfanylethylamino)propyl]butanamide # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PNY 'Create component' 2010-07-06 PDBJ PNY 'Modify descriptor' 2011-06-04 RCSB PNY 'Modify synonyms' 2021-03-13 RCSB # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 PNY pantetheine PDB ? 2 PNY (R)-2,4-Dihydroxy-N-(3-((2-mercaptoethyl)amino)-3-oxopropyl)-3,3-dimethylbutanamide PDB ? # loop_ _pdbe_chem_comp_synonyms.comp_id _pdbe_chem_comp_synonyms.name _pdbe_chem_comp_synonyms.provenance _pdbe_chem_comp_synonyms.type PNY pantetheine wwPDB ? PNY (R)-2,4-Dihydroxy-N-(3-((2-mercaptoethyl)amino)-3-oxopropyl)-3,3-dimethylbutanamide wwPDB ? # loop_ _software.name _software.version _software.description rdkit 2023.03.3 'Core functionality.' pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.' # loop_ _pdbe_chem_comp_atom_depiction.comp_id _pdbe_chem_comp_atom_depiction.atom_id _pdbe_chem_comp_atom_depiction.element _pdbe_chem_comp_atom_depiction.model_Cartn_x _pdbe_chem_comp_atom_depiction.model_Cartn_y _pdbe_chem_comp_atom_depiction.pdbx_ordinal PNY CAA C 5.104 -1.357 1 PNY CAB C 5.654 0.692 2 PNY OAC O 14.198 -2.107 3 PNY OAD O 9.002 -2.107 4 PNY OAE O 3.805 -0.608 5 PNY CAF C 6.404 -0.608 6 PNY SAG S 19.394 -0.608 7 PNY CAH C 18.095 0.142 8 PNY CAI C 7.154 -1.907 9 PNY CAJ C 16.796 -0.608 10 PNY CAK C 11.600 -0.608 11 PNY CAL C 12.899 0.142 12 PNY NAM N 15.497 0.142 13 PNY NAN N 10.301 0.142 14 PNY CAO C 14.198 -0.608 15 PNY CAP C 9.002 -0.608 16 PNY CAQ C 7.702 0.142 17 PNY OAR O 7.702 1.643 18 # loop_ _pdbe_chem_comp_bond_depiction.comp_id _pdbe_chem_comp_bond_depiction.atom_id_1 _pdbe_chem_comp_bond_depiction.atom_id_2 _pdbe_chem_comp_bond_depiction.value_order _pdbe_chem_comp_bond_depiction.bond_dir _pdbe_chem_comp_bond_depiction.pdbx_ordinal PNY CAA OAE SINGLE NONE 1 PNY CAA CAF SINGLE NONE 2 PNY CAB CAF SINGLE NONE 3 PNY OAC CAO DOUBLE NONE 4 PNY OAD CAP DOUBLE NONE 5 PNY CAF CAI SINGLE NONE 6 PNY CAF CAQ SINGLE NONE 7 PNY SAG CAH SINGLE NONE 8 PNY CAH CAJ SINGLE NONE 9 PNY CAJ NAM SINGLE NONE 10 PNY CAK CAL SINGLE NONE 11 PNY CAK NAN SINGLE NONE 12 PNY CAL CAO SINGLE NONE 13 PNY NAM CAO SINGLE NONE 14 PNY NAN CAP SINGLE NONE 15 PNY CAP CAQ SINGLE NONE 16 PNY CAQ OAR SINGLE BEGINWEDGE 17 # _pdbe_chem_comp_substructure.comp_id PNY _pdbe_chem_comp_substructure.substructure_name amide _pdbe_chem_comp_substructure.id F1 _pdbe_chem_comp_substructure.substructure_type fragment _pdbe_chem_comp_substructure.substructure_smiles CC(N)=O _pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) _pdbe_chem_comp_substructure.substructure_inchikeys DLFVBJFMPXGRIB-UHFFFAOYSA-N # loop_ _pdbe_chem_comp_substructure_mapping.comp_id _pdbe_chem_comp_substructure_mapping.atom_id _pdbe_chem_comp_substructure_mapping.substructure_id _pdbe_chem_comp_substructure_mapping.substructure_ordinal PNY NAM F1 1 PNY CAO F1 1 PNY OAC F1 1 PNY CAL F1 1 PNY NAN F1 2 PNY CAP F1 2 PNY OAD F1 2 PNY CAQ F1 2 # _pdbe_chem_comp_rdkit_properties.comp_id PNY _pdbe_chem_comp_rdkit_properties.exactmw 278.130 _pdbe_chem_comp_rdkit_properties.amw 278.374 _pdbe_chem_comp_rdkit_properties.lipinskiHBA 6 _pdbe_chem_comp_rdkit_properties.lipinskiHBD 4 _pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13 _pdbe_chem_comp_rdkit_properties.NumHBD 5 _pdbe_chem_comp_rdkit_properties.NumHBA 5 _pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18 _pdbe_chem_comp_rdkit_properties.NumAtoms 40 _pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7 _pdbe_chem_comp_rdkit_properties.NumAmideBonds 2 _pdbe_chem_comp_rdkit_properties.FractionCSP3 0.818 _pdbe_chem_comp_rdkit_properties.NumRings 0 _pdbe_chem_comp_rdkit_properties.NumAromaticRings 0 _pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0 _pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0 _pdbe_chem_comp_rdkit_properties.NumHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0 _pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0 _pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0 _pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1 _pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0 _pdbe_chem_comp_rdkit_properties.labuteASA 143.435 _pdbe_chem_comp_rdkit_properties.tpsa 98.660 _pdbe_chem_comp_rdkit_properties.CrippenClogP -1.082 _pdbe_chem_comp_rdkit_properties.CrippenMR 71.363 _pdbe_chem_comp_rdkit_properties.chi0v 9.252 _pdbe_chem_comp_rdkit_properties.chi1v 4.323 _pdbe_chem_comp_rdkit_properties.chi2v 1.303 _pdbe_chem_comp_rdkit_properties.chi3v 1.303 _pdbe_chem_comp_rdkit_properties.chi4v 0.531 _pdbe_chem_comp_rdkit_properties.chi0n 30.436 _pdbe_chem_comp_rdkit_properties.chi1n 14.534 _pdbe_chem_comp_rdkit_properties.chi2n 1.211 _pdbe_chem_comp_rdkit_properties.chi3n 1.211 _pdbe_chem_comp_rdkit_properties.chi4n 0.486 _pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.790 _pdbe_chem_comp_rdkit_properties.kappa1 3.097 _pdbe_chem_comp_rdkit_properties.kappa2 8.336 _pdbe_chem_comp_rdkit_properties.kappa3 6.226 _pdbe_chem_comp_rdkit_properties.Phi 1.434 # loop_ _pdbe_chem_comp_external_mappings.comp_id _pdbe_chem_comp_external_mappings.source _pdbe_chem_comp_external_mappings.resource _pdbe_chem_comp_external_mappings.resource_id PNY UniChem ChEMBL CHEMBL1738861 PNY UniChem PDBe PNY PNY UniChem 'KEGG LIGAND' C00831 PNY UniChem ChEBI 16753 PNY UniChem ZINC ZINC000003869684 PNY UniChem fdasrs VCH6X4IARE PNY UniChem NMRShiftDB 60021095 PNY UniChem Recon ptth PNY UniChem MetaboLights MTBLC16753 PNY UniChem BRENDA 121913 PNY UniChem BRENDA 2214 PNY UniChem BRENDA 35012 PNY UniChem Rhea 16753 PNY UniChem ChemicalBook CB4926663 PNY UniChem MedChemExpress HY-126050 PNY UniChem 'Probes And Drugs' PD167060 PNY UniChem Nikkaji J15.187D PNY UniChem SureChEMBL SCHEMBL13599647 PNY UniChem PubChem 439322 # loop_ _pdbe_chem_comp_rdkit_conformer.comp_id _pdbe_chem_comp_rdkit_conformer.atom_id _pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit _pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit _pdbe_chem_comp_rdkit_conformer.rdkit_method _pdbe_chem_comp_rdkit_conformer.rdkit_ordinal PNY CAA -3.704 -1.475 0.165 ETKDGv3 1 PNY CAB -4.973 0.404 -0.938 ETKDGv3 2 PNY OAC 4.018 1.686 0.747 ETKDGv3 3 PNY OAD -0.552 -1.093 -0.712 ETKDGv3 4 PNY OAE -4.814 -1.767 0.973 ETKDGv3 5 PNY CAF -3.662 0.034 -0.205 ETKDGv3 6 PNY SAG 6.113 -1.767 -1.226 ETKDGv3 7 PNY CAH 6.247 -0.647 0.203 ETKDGv3 8 PNY CAI -3.569 0.868 1.097 ETKDGv3 9 PNY CAJ 5.128 -0.915 1.210 ETKDGv3 10 PNY CAK 0.888 0.807 0.845 ETKDGv3 11 PNY CAL 1.982 0.900 -0.220 ETKDGv3 12 PNY NAM 3.816 -0.643 0.623 ETKDGv3 13 PNY NAN -0.426 1.033 0.248 ETKDGv3 14 PNY CAO 3.332 0.688 0.394 ETKDGv3 15 PNY CAP -1.092 0.035 -0.545 ETKDGv3 16 PNY CAQ -2.447 0.296 -1.169 ETKDGv3 17 PNY OAR -2.482 1.568 -1.773 ETKDGv3 18 PNY HAA -3.756 -2.089 -0.762 ETKDGv3 19 PNY HAAA -2.777 -1.757 0.711 ETKDGv3 20 PNY HAB -5.075 -0.183 -1.876 ETKDGv3 21 PNY HABA -5.861 0.199 -0.302 ETKDGv3 22 PNY HABB -4.992 1.484 -1.197 ETKDGv3 23 PNY HOAE -4.772 -2.740 1.160 ETKDGv3 24 PNY HSAG 7.253 -1.219 -1.844 ETKDGv3 25 PNY HAH 7.228 -0.814 0.696 ETKDGv3 26 PNY HAHA 6.208 0.405 -0.149 ETKDGv3 27 PNY HAI -2.673 0.584 1.689 ETKDGv3 28 PNY HAIA -4.459 0.692 1.739 ETKDGv3 29 PNY HAIB -3.531 1.956 0.887 ETKDGv3 30 PNY HAJ 5.175 -1.978 1.532 ETKDGv3 31 PNY HAJA 5.273 -0.284 2.113 ETKDGv3 32 PNY HAK 0.909 -0.188 1.342 ETKDGv3 33 PNY HAKA 1.071 1.581 1.623 ETKDGv3 34 PNY HAL 1.817 0.134 -1.008 ETKDGv3 35 PNY HALA 1.945 1.900 -0.705 ETKDGv3 36 PNY HNAM 3.189 -1.452 0.413 ETKDGv3 37 PNY HNAN -0.911 1.929 0.471 ETKDGv3 38 PNY HAQ -2.546 -0.427 -2.010 ETKDGv3 39 PNY HOAR -2.513 2.257 -1.064 ETKDGv3 40 #