data_PMS
#
_chem_comp.id PMS
_chem_comp.name 'phenylmethanesulfonic acid'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C7 H8 O3 S'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-08-24
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces IOX
_chem_comp.formula_weight 172.202
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PMS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3IOX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PMS C C C 0 1 N N N N N N 5.225 31.045 6.365 0.500 -0.002 -1.194 C PMS 1
PMS S S S 0 1 N N N N N N 4.321 29.625 7.020 1.718 0.000 0.151 S PMS 2
PMS C1 C1 C 0 1 Y N N N N N 5.968 32.380 6.434 -0.891 -0.001 -0.612 C1 PMS 3
PMS C2 C2 C 0 1 Y N N N N N 7.281 32.457 7.060 -1.528 1.197 -0.347 C2 PMS 4
PMS C3 C3 C 0 1 Y N N N N N 7.995 33.738 7.125 -2.803 1.198 0.187 C3 PMS 5
PMS C4 C4 C 0 1 Y N N N N N 7.396 34.950 6.562 -3.441 0.001 0.455 C4 PMS 6
PMS C5 C5 C 0 1 Y N N N N N 6.077 34.870 5.932 -2.803 -1.197 0.190 C5 PMS 7
PMS C6 C6 C 0 1 Y N N N N N 5.370 33.593 5.870 -1.530 -1.197 -0.349 C6 PMS 8
PMS O3S O3S O 0 1 N Y N N N N 4.937 28.785 8.011 3.065 -0.001 -0.558 O3S PMS 9
PMS O2S O2S O 0 1 N N N N N N 4.052 28.813 5.808 1.689 1.238 0.848 O2S PMS 10
PMS O1S O1S O 0 1 N N N N N N 2.960 30.041 7.458 1.689 -1.236 0.851 O1S PMS 11
PMS H2A H2A H 0 1 N N N N N N 4.427 31.390 5.691 0.637 0.887 -1.809 H2A PMS 12
PMS H1 H1 H 0 1 N N N N N N 6.062 30.467 5.946 0.637 -0.892 -1.807 H1 PMS 13
PMS H2 H2 H 0 1 N N N N N N 7.731 31.568 7.478 -1.030 2.132 -0.556 H2 PMS 14
PMS H3 H3 H 0 1 N N N N N N 8.968 33.787 7.591 -3.301 2.133 0.394 H3 PMS 15
PMS H4 H4 H 0 1 N N N N N N 7.921 35.892 6.611 -4.437 0.001 0.873 H4 PMS 16
PMS H5 H5 H 0 1 N N N N N N 5.626 35.757 5.512 -3.301 -2.132 0.400 H5 PMS 17
PMS H6 H6 H 0 1 N N N N N N 4.397 33.543 5.404 -1.034 -2.133 -0.560 H6 PMS 18
PMS HO3S HO3S H 0 0 N Y N N N N 5.031 27.905 7.666 3.824 -0.000 0.041 HO3S PMS 19
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PMS C C1 SING N N 1
PMS C S SING N N 2
PMS C H2A SING N N 3
PMS C H1 SING N N 4
PMS O2S S DOUB N N 5
PMS S O1S DOUB N N 6
PMS S O3S SING N N 7
PMS C6 C1 DOUB Y N 8
PMS C1 C2 SING Y N 9
PMS C2 C3 DOUB Y N 10
PMS C2 H2 SING N N 11
PMS C4 C3 SING Y N 12
PMS C3 H3 SING N N 13
PMS C5 C4 DOUB Y N 14
PMS C4 H4 SING N N 15
PMS C6 C5 SING Y N 16
PMS C5 H5 SING N N 17
PMS C6 H6 SING N N 18
PMS O3S HO3S SING N N 19
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PMS SMILES ACDLabs 11.02 'O=S(=O)(O)Cc1ccccc1'
PMS SMILES_CANONICAL CACTVS 3.352 'O[S](=O)(=O)Cc1ccccc1'
PMS SMILES CACTVS 3.352 'O[S](=O)(=O)Cc1ccccc1'
PMS SMILES_CANONICAL 'OpenEye OEToolkits' 1.7.0 'c1ccc(cc1)CS(=O)(=O)O'
PMS SMILES 'OpenEye OEToolkits' 1.7.0 'c1ccc(cc1)CS(=O)(=O)O'
PMS InChI InChI 1.03 'InChI=1S/C7H8O3S/c8-11(9,10)6-7-4-2-1-3-5-7/h1-5H,6H2,(H,8,9,10)'
PMS InChIKey InChI 1.03 NIXKBAZVOQAHGC-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PMS 'SYSTEMATIC NAME' ACDLabs 11.02 'phenylmethanesulfonic acid'
PMS 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.6.1 'phenylmethanesulfonic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PMS 'Create component' 2009-08-24 RCSB
PMS 'Modify aromatic_flag' 2011-06-04 RCSB
PMS 'Modify descriptor' 2011-06-04 RCSB
PMS 'Modify PCM' 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 PMS PRO None 'Covalent chemical modification' 'Amino-acid backbone' N-terminal S N ? ?
2 PMS SER None 'Covalent chemical modification' 'Amino-acid side chain' 'Any position' S OG ? ?
3 PMS TYR None 'Covalent chemical modification' 'Amino-acid side chain' 'Any position' S OH ? ?
#
_pdbe_chem_comp_drugbank_details.comp_id PMS
_pdbe_chem_comp_drugbank_details.drugbank_id DB03297
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Benzylsulfonic acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 100-87-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
PMS 'alpha-Toluenesulfonic acid' DrugBank ?
PMS 'Benzenemethanesulfonic acid' DrugBank ?
PMS 'Benzylsulfinic acid' DrugBank ?
PMS 'Benzylsulfonic acid' DrugBank ?
PMS 'Phenylmethanesulfonic acid' DrugBank ?
PMS 'Toluene-alpha-sulphonic acid' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id PMS
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03297
_pdbe_chem_comp_drugbank_classification.parent 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as benzene and substituted derivatives. These are aromatic compounds containing one monocyclic ring system consisting of benzene.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
PMS DB03297 Chymase Humans P23946 unknown 1
PMS DB03297 "Subtilisin BPN'" 'Bacillus amyloliquefaciens' P00782 unknown 2
PMS DB03297 'Sigma factor SigB regulation protein RsbQ' 'Bacillus subtilis (strain 168)' O07015 unknown 3
PMS DB03297 'Superoxide dismutase [Mn], mitochondrial' Humans P04179 unknown 4
PMS DB03297 'Serine protease hepsin' Humans P05981 unknown 5
PMS DB03297 'Extracellular subtilisin-like serine proteinase' 'Vibrio sp. PA-44' Q8GB52 unknown 6
PMS DB03297 'Carboxylesterase 2' 'Pseudomonas fluorescens' Q53547 unknown 7
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PMS C C 4.299 1.035 1
PMS S S 5.598 1.785 2
PMS C1 C 4.299 -0.465 3
PMS C2 C 5.598 -1.215 4
PMS C3 C 5.598 -2.715 5
PMS C4 C 4.299 -3.465 6
PMS C5 C 3.000 -2.715 7
PMS C6 C 3.000 -1.215 8
PMS O3S O 6.348 0.486 9
PMS O2S O 6.897 2.535 10
PMS O1S O 4.848 3.084 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PMS C C1 SINGLE NONE 1
PMS C S SINGLE NONE 2
PMS O2S S DOUBLE NONE 3
PMS S O1S DOUBLE NONE 4
PMS S O3S SINGLE NONE 5
PMS C6 C1 DOUBLE NONE 6
PMS C1 C2 SINGLE NONE 7
PMS C2 C3 DOUBLE NONE 8
PMS C4 C3 SINGLE NONE 9
PMS C5 C4 DOUBLE NONE 10
PMS C6 C5 SINGLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PMS MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
PMS phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PMS C1 S1 1
PMS C2 S1 1
PMS C3 S1 1
PMS C4 S1 1
PMS C5 S1 1
PMS C6 S1 1
PMS C1 F1 1
PMS C6 F1 1
PMS C5 F1 1
PMS C4 F1 1
PMS C3 F1 1
PMS C2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id PMS
_pdbe_chem_comp_rdkit_properties.exactmw 172.019
_pdbe_chem_comp_rdkit_properties.amw 172.205
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 19
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 76.751
_pdbe_chem_comp_rdkit_properties.tpsa 54.370
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.020
_pdbe_chem_comp_rdkit_properties.CrippenMR 41.429
_pdbe_chem_comp_rdkit_properties.chi0v 5.949
_pdbe_chem_comp_rdkit_properties.chi1v 3.862
_pdbe_chem_comp_rdkit_properties.chi2v 1.181
_pdbe_chem_comp_rdkit_properties.chi3v 1.181
_pdbe_chem_comp_rdkit_properties.chi4v 0.778
_pdbe_chem_comp_rdkit_properties.chi0n 13.133
_pdbe_chem_comp_rdkit_properties.chi1n 6.362
_pdbe_chem_comp_rdkit_properties.chi2n 0.727
_pdbe_chem_comp_rdkit_properties.chi3n 0.727
_pdbe_chem_comp_rdkit_properties.chi4n 0.426
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.870
_pdbe_chem_comp_rdkit_properties.kappa1 2.569
_pdbe_chem_comp_rdkit_properties.kappa2 3.023
_pdbe_chem_comp_rdkit_properties.kappa3 3.154
_pdbe_chem_comp_rdkit_properties.Phi 0.706
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PMS UniChem DrugBank DB03297
PMS UniChem ZINC ZINC000001593155
PMS UniChem eMolecules 1014089
PMS UniChem fdasrs 5BRP81V98H
PMS UniChem SureChEMBL SCHEMBL1749
PMS UniChem 'PubChem TPHARMA' 15898968
PMS UniChem 'EPA CompTox Dashboard' DTXSID2059221
PMS UniChem 'Probes And Drugs' PD059698
PMS UniChem ChemicalBook CB0914446
PMS UniChem PubChem 7532
PMS UniChem ACTor 100-87-8
PMS UniChem Nikkaji J182.139C
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PMS C 1.212 -1.200 -0.155 ETKDGv3 1
PMS S 2.466 0.001 0.253 ETKDGv3 2
PMS C1 -0.154 -0.581 -0.060 ETKDGv3 3
PMS C2 -0.739 0.102 -1.241 ETKDGv3 4
PMS C3 -1.941 0.687 -1.154 ETKDGv3 5
PMS C4 -2.688 0.659 0.120 ETKDGv3 6
PMS C5 -2.162 0.054 1.191 ETKDGv3 7
PMS C6 -0.834 -0.590 1.101 ETKDGv3 8
PMS O3S 2.340 1.317 -0.785 ETKDGv3 9
PMS O2S 3.821 -0.630 0.101 ETKDGv3 10
PMS O1S 2.283 0.458 1.673 ETKDGv3 11
PMS H2A 1.299 -2.068 0.534 ETKDGv3 12
PMS H1 1.390 -1.570 -1.187 ETKDGv3 13
PMS H2 -0.195 0.130 -2.177 ETKDGv3 14
PMS H3 -2.366 1.184 -2.017 ETKDGv3 15
PMS H4 -3.659 1.132 0.185 ETKDGv3 16
PMS H5 -2.706 0.035 2.126 ETKDGv3 17
PMS H6 -0.418 -1.063 1.983 ETKDGv3 18
PMS HO3S 3.051 1.942 -0.493 ETKDGv3 19
#