data_PIH
#
_chem_comp.id PIH
_chem_comp.name iodobenzene
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H5 I"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-07-13
_chem_comp.pdbx_modified_date 2021-01-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 204.008
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PIH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PIH C1 C1 C 0 1 Y N N N N N 63.377 83.443 53.663 1.197 0.000 1.460 C1 PIH 1
PIH C2 C2 C 0 1 Y N N N N N 63.738 82.367 54.369 1.197 0.000 2.842 C2 PIH 2
PIH C3 C3 C 0 1 Y N N N N N 65.004 81.807 54.225 0.000 -0.001 3.533 C3 PIH 3
PIH C4 C4 C 0 1 Y N N N N N 65.910 82.392 53.337 -1.197 -0.002 2.842 C4 PIH 4
PIH C5 C5 C 0 1 Y N N N N N 65.547 83.494 52.616 -1.197 0.004 1.460 C5 PIH 5
PIH C6 C6 C 0 1 Y N N N N N 64.273 83.998 52.793 0.000 -0.000 0.768 C6 PIH 6
PIH I6 I6 I 0 1 N N N N N N 63.648 85.562 51.727 0.000 -0.000 -1.326 I6 PIH 7
PIH H1 H1 H 0 1 N N N N N N 62.365 83.862 53.795 2.133 0.001 0.920 H1 PIH 8
PIH H2 H2 H 0 1 N N N N N N 62.995 81.943 55.066 2.132 0.001 3.382 H2 PIH 9
PIH H3 H3 H 0 1 N N N N N N 65.285 80.912 54.806 0.000 -0.001 4.613 H3 PIH 10
PIH H4 H4 H 0 1 N N N N N N 66.924 81.978 53.203 -2.132 -0.004 3.382 H4 PIH 11
PIH H5 H5 H 0 1 N N N N N N 66.258 83.961 51.914 -2.133 0.003 0.920 H5 PIH 12
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PIH C1 C2 DOUB Y N 1
PIH C1 C6 SING Y N 2
PIH C1 H1 SING N N 3
PIH C2 C3 SING Y N 4
PIH C2 H2 SING N N 5
PIH C3 C4 DOUB Y N 6
PIH C3 H3 SING N N 7
PIH C4 C5 SING Y N 8
PIH C4 H4 SING N N 9
PIH C5 C6 DOUB Y N 10
PIH C5 H5 SING N N 11
PIH C6 I6 SING N N 12
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PIH SMILES ACDLabs 10.04 Ic1ccccc1
PIH SMILES_CANONICAL CACTVS 3.341 Ic1ccccc1
PIH SMILES CACTVS 3.341 Ic1ccccc1
PIH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)I
PIH SMILES "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)I
PIH InChI InChI 1.03 InChI=1S/C6H5I/c7-6-4-2-1-3-5-6/h1-5H
PIH InChIKey InChI 1.03 SNHMUERNLJLMHN-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PIH "SYSTEMATIC NAME" ACDLabs 10.04 iodobenzene
PIH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 iodobenzene
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PIH 'Create component' 2000-07-13 RCSB
PIH 'Modify descriptor' 2011-06-04 RCSB
PIH 'Modify name' 2021-01-05 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id PIH
_pdbe_chem_comp_drugbank_details.drugbank_id DB02252
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Iodobenzene
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 591-50-4
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
PIH 'Benzene iodide' DrugBank ?
PIH Iodinebenzol DrugBank ?
PIH Iodo-benzene DrugBank ?
PIH 'Phenyl iodide' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id PIH
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02252
_pdbe_chem_comp_drugbank_classification.parent Iodobenzenes
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as iodobenzenes. These are aromatic compounds containing one or more iodine atoms attached to a benzene.'
#
_pdbe_chem_comp_drugbank_targets.comp_id PIH
_pdbe_chem_comp_drugbank_targets.drugbank_id DB02252
_pdbe_chem_comp_drugbank_targets.name 'Endoglucanase F'
_pdbe_chem_comp_drugbank_targets.organism 'Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)'
_pdbe_chem_comp_drugbank_targets.uniprot_id P37698
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PIH C1 C 3.000 0.000 1
PIH C2 C 3.000 -1.500 2
PIH C3 C 4.299 -2.250 3
PIH C4 C 5.598 -1.500 4
PIH C5 C 5.598 0.000 5
PIH C6 C 4.299 0.750 6
PIH I6 I 4.299 2.250 7
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PIH C1 C2 DOUBLE NONE 1
PIH C1 C6 SINGLE NONE 2
PIH C2 C3 SINGLE NONE 3
PIH C3 C4 DOUBLE NONE 4
PIH C4 C5 SINGLE NONE 5
PIH C5 C6 DOUBLE NONE 6
PIH C6 I6 SINGLE NONE 7
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PIH MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
PIH phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PIH C1 S1 1
PIH C2 S1 1
PIH C3 S1 1
PIH C4 S1 1
PIH C5 S1 1
PIH C6 S1 1
PIH C1 F1 1
PIH C2 F1 1
PIH C3 F1 1
PIH C4 F1 1
PIH C5 F1 1
PIH C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id PIH
_pdbe_chem_comp_rdkit_properties.exactmw 203.944
_pdbe_chem_comp_rdkit_properties.amw 204.010
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 0
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 0
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 7
_pdbe_chem_comp_rdkit_properties.NumAtoms 12
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 63.718
_pdbe_chem_comp_rdkit_properties.tpsa 0
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.291
_pdbe_chem_comp_rdkit_properties.CrippenMR 39.159
_pdbe_chem_comp_rdkit_properties.chi0v 5.535
_pdbe_chem_comp_rdkit_properties.chi1v 2.768
_pdbe_chem_comp_rdkit_properties.chi2v 1.009
_pdbe_chem_comp_rdkit_properties.chi3v 1.009
_pdbe_chem_comp_rdkit_properties.chi4v 0.504
_pdbe_chem_comp_rdkit_properties.chi0n 8.378
_pdbe_chem_comp_rdkit_properties.chi1n 4.189
_pdbe_chem_comp_rdkit_properties.chi2n 0.469
_pdbe_chem_comp_rdkit_properties.chi3n 0.469
_pdbe_chem_comp_rdkit_properties.chi4n 0.235
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.050
_pdbe_chem_comp_rdkit_properties.kappa1 1.723
_pdbe_chem_comp_rdkit_properties.kappa2 2.307
_pdbe_chem_comp_rdkit_properties.kappa3 1.469
_pdbe_chem_comp_rdkit_properties.Phi 0.568
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PIH UniChem DrugBank DB02252
PIH UniChem ZINC ZINC000001699878
PIH UniChem fdasrs 9HK5L7YBBR
PIH UniChem SureChEMBL SCHEMBL1587
PIH UniChem HMDB HMDB0253521
PIH UniChem 'PubChem TPHARMA' 14867824
PIH UniChem NMRShiftDB 20036225
PIH UniChem ACTor 172484-65-0
PIH UniChem Nikkaji J2.690E
PIH UniChem BRENDA 55174
PIH UniChem ChemicalBook CB0700740
PIH UniChem 'Probes And Drugs' PD008103
PIH UniChem CCDC REKYAI
PIH UniChem 'EPA CompTox Dashboard' DTXSID8060452
PIH UniChem eMolecules 523225
PIH UniChem PubChem 11575
PIH UniChem Mcule MCULE-7469705320
PIH UniChem ACTor 591-50-4
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PIH C1 0.652 1.206 0.023 ETKDGv3 1
PIH C2 -0.685 1.279 -0.018 ETKDGv3 2
PIH C3 -1.493 0.042 -0.045 ETKDGv3 3
PIH C4 -0.889 -1.153 -0.030 ETKDGv3 4
PIH C5 0.587 -1.235 0.015 ETKDGv3 5
PIH C6 1.320 -0.114 0.040 ETKDGv3 6
PIH I6 3.426 -0.221 0.103 ETKDGv3 7
PIH H1 1.243 2.112 0.043 ETKDGv3 8
PIH H2 -1.177 2.244 -0.030 ETKDGv3 9
PIH H3 -2.573 0.104 -0.078 ETKDGv3 10
PIH H4 -1.478 -2.061 -0.050 ETKDGv3 11
PIH H5 1.068 -2.204 0.027 ETKDGv3 12
#