data_PHX
#
_chem_comp.id PHX
_chem_comp.name "4-{[(Z)-(5-OXO-2-PHENYL-1,3-OXAZOL-4(5H)-YLIDENE)METHYL]AMINO}BUTANOIC ACID"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H14 N2 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-04-09
_chem_comp.pdbx_modified_date 2014-09-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 274.272
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PHX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2CJU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PHX CAC CAC C 0 1 Y N N N N N 16.814 28.083 57.223 -5.006 -1.079 -0.003 CAC PHX 1
PHX CAB CAB C 0 1 Y N N N N N 17.582 29.218 58.056 -6.376 -0.914 -0.002 CAB PHX 2
PHX CAM CAM C 0 1 Y N N N N N 18.009 29.055 59.605 -6.923 0.357 -0.000 CAM PHX 3
PHX CAQ CAQ C 0 1 Y N N N N N 17.645 27.658 60.055 -6.101 1.471 0.001 CAQ PHX 4
PHX CAR CAR C 0 1 Y N N N N N 16.883 26.508 59.238 -4.730 1.320 0.001 CAR PHX 5
PHX CAN CAN C 0 1 Y N N N N N 16.417 26.756 57.794 -4.171 0.041 -0.001 CAN PHX 6
PHX CAO CAO C 0 1 N N N N N N 15.719 25.923 57.433 -2.704 -0.128 -0.002 CAO PHX 7
PHX NAD NAD N 0 1 N N N N N N 15.351 24.550 57.631 -1.842 0.850 -0.000 NAD PHX 8
PHX OAS OAS O 0 1 N N N N N N 15.439 26.299 56.060 -2.066 -1.316 0.002 OAS PHX 9
PHX CAT CAT C 0 1 N N N N N N 14.772 25.093 55.390 -0.736 -1.088 0.001 CAT PHX 10
PHX OAU OAU O 0 1 N N N N N N 14.133 25.127 54.339 0.150 -1.923 0.004 OAU PHX 11
PHX CAE CAE C 0 1 N N N N N N 14.741 23.844 56.346 -0.580 0.326 -0.000 CAE PHX 12
PHX CAF CAF C 0 1 N N N N N N 14.019 22.976 56.495 0.608 1.028 0.000 CAF PHX 13
PHX NAG NAG N 0 1 N N N N N N 14.437 21.575 56.356 1.792 0.359 -0.000 NAG PHX 14
PHX CAH CAH C 0 1 N N N N N N 13.327 20.523 56.564 3.054 1.104 0.001 CAH PHX 15
PHX CAI CAI C 0 1 N N N N N N 13.430 19.193 55.842 4.227 0.121 -0.001 CAI PHX 16
PHX CAJ CAJ C 0 1 N N N N N N 14.549 18.821 54.910 5.544 0.899 0.000 CAJ PHX 17
PHX CAK CAK C 0 1 N N N N N N 15.874 18.037 54.807 6.699 -0.069 -0.001 CAK PHX 18
PHX OAL OAL O 0 1 N N N N N N 15.733 17.154 53.859 6.490 -1.259 -0.002 OAL PHX 19
PHX OAP OAP O 0 1 N N N N N N 17.004 18.850 54.642 7.960 0.391 -0.000 OAP PHX 20
PHX HAC HAC H 0 1 N N N N N N 16.569 28.287 56.191 -4.580 -2.071 -0.000 HAC PHX 21
PHX HAB HAB H 0 1 N N N N N N 17.827 30.142 57.554 -7.022 -1.779 -0.003 HAB PHX 22
PHX HAM HAM H 0 1 N N N N N N 18.475 29.814 60.215 -7.995 0.481 -0.000 HAM PHX 23
PHX HAQ HAQ H 0 1 N N N N N N 17.938 27.400 61.062 -6.535 2.460 0.003 HAQ PHX 24
PHX HAR HAR H 0 1 N N N N N N 16.696 25.552 59.705 -4.090 2.190 0.002 HAR PHX 25
PHX HAF HAF H 0 1 N N N N N N 12.991 23.191 56.747 0.598 2.107 0.002 HAF PHX 26
PHX HAG HAG H 0 1 N N N N N N 14.806 21.454 55.435 1.802 -0.611 -0.001 HAG PHX 27
PHX HAH1 HAH1 H 0 0 N N N N N N 13.289 20.303 57.641 3.105 1.732 -0.889 HAH1 PHX 28
PHX HAH2 HAH2 H 0 0 N N N N N N 12.380 20.987 56.251 3.105 1.730 0.891 HAH2 PHX 29
PHX HAI1 HAI1 H 0 0 N N N N N N 13.433 18.426 56.631 4.175 -0.507 0.889 HAI1 PHX 30
PHX HAI2 HAI2 H 0 0 N N N N N N 12.508 19.105 55.249 4.175 -0.505 -0.891 HAI2 PHX 31
PHX HAJ1 HAJ1 H 0 0 N N N N N N 13.979 18.354 54.093 5.596 1.527 -0.889 HAJ1 PHX 32
PHX HAJ2 HAJ2 H 0 0 N N N N N N 14.886 19.820 54.597 5.596 1.525 0.891 HAJ2 PHX 33
PHX HAP HAP H 0 1 N N N N N N 17.464 18.597 53.850 8.668 -0.268 -0.001 HAP PHX 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PHX CAC CAB SING Y N 1
PHX CAC CAN DOUB Y N 2
PHX CAB CAM DOUB Y N 3
PHX CAM CAQ SING Y N 4
PHX CAQ CAR DOUB Y N 5
PHX CAR CAN SING Y N 6
PHX CAN CAO SING N N 7
PHX CAO NAD DOUB N N 8
PHX CAO OAS SING N N 9
PHX NAD CAE SING N N 10
PHX OAS CAT SING N N 11
PHX CAT OAU DOUB N N 12
PHX CAT CAE SING N N 13
PHX CAE CAF DOUB N Z 14
PHX CAF NAG SING N N 15
PHX NAG CAH SING N N 16
PHX CAH CAI SING N N 17
PHX CAI CAJ SING N N 18
PHX CAJ CAK SING N N 19
PHX CAK OAL DOUB N N 20
PHX CAK OAP SING N N 21
PHX CAC HAC SING N N 22
PHX CAB HAB SING N N 23
PHX CAM HAM SING N N 24
PHX CAQ HAQ SING N N 25
PHX CAR HAR SING N N 26
PHX CAF HAF SING N N 27
PHX NAG HAG SING N N 28
PHX CAH HAH1 SING N N 29
PHX CAH HAH2 SING N N 30
PHX CAI HAI1 SING N N 31
PHX CAI HAI2 SING N N 32
PHX CAJ HAJ1 SING N N 33
PHX CAJ HAJ2 SING N N 34
PHX OAP HAP SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PHX SMILES ACDLabs 12.01 O=C1OC(=N\C1=C\NCCCC(=O)O)c2ccccc2
PHX InChI InChI 1.03 InChI=1S/C14H14N2O4/c17-12(18)7-4-8-15-9-11-14(19)20-13(16-11)10-5-2-1-3-6-10/h1-3,5-6,9,15H,4,7-8H2,(H,17,18)
PHX InChIKey InChI 1.03 PXGNVFUWTUIRCJ-UHFFFAOYSA-N
PHX SMILES_CANONICAL CACTVS 3.385 OC(=O)CCCN\C=C1/N=C(OC1=O)c2ccccc2
PHX SMILES CACTVS 3.385 OC(=O)CCCNC=C1N=C(OC1=O)c2ccccc2
PHX SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)C2=NC(=CNCCCC(=O)O)C(=O)O2
PHX SMILES "OpenEye OEToolkits" 1.9.2 c1ccc(cc1)C2=NC(=CNCCCC(=O)O)C(=O)O2
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PHX "SYSTEMATIC NAME" ACDLabs 12.01 "4-{[(E)-(5-oxo-2-phenyl-1,3-oxazol-4(5H)-ylidene)methyl]amino}butanoic acid"
PHX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "4-[(5-oxidanylidene-2-phenyl-1,3-oxazol-4-ylidene)methylamino]butanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PHX 'Create component' 2006-04-09 EBI
PHX 'Modify aromatic_flag' 2011-06-04 RCSB
PHX 'Modify descriptor' 2011-06-04 RCSB
PHX 'Other modification' 2012-08-08 EBI
PHX 'Modify descriptor' 2014-09-05 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id PHX
_pdbe_chem_comp_drugbank_details.drugbank_id DB08396
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '4-{[(Z)-(5-oxo-2-phenyl-1,3-oxazol-4(5H)-ylidene)methyl]amino}butanoic acid'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id PHX
_pdbe_chem_comp_synonyms.name '4-{[(Z)-(5-oxo-2-phenyl-1,3-oxazol-4(5H)-ylidene)methyl]amino}butanoic acid'
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_targets.comp_id PHX
_pdbe_chem_comp_drugbank_targets.drugbank_id DB08396
_pdbe_chem_comp_drugbank_targets.name 'Immunoglobulin heavy variable 3-30'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P01768
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PHX CAC C 11.378 -3.346 1
PHX CAB C 11.378 -4.846 2
PHX CAM C 12.677 -5.596 3
PHX CAQ C 13.976 -4.846 4
PHX CAR C 13.976 -3.346 5
PHX CAN C 12.677 -2.596 6
PHX CAO C 12.677 -1.096 7
PHX NAD N 11.463 -0.214 8
PHX OAS O 13.890 -0.214 9
PHX CAT C 13.427 1.212 10
PHX OAU O 14.309 2.426 11
PHX CAE C 11.927 1.212 12
PHX CAF C 11.045 2.426 13
PHX NAG N 9.553 2.269 14
PHX CAH C 8.672 3.482 15
PHX CAI C 7.180 3.326 16
PHX CAJ C 6.298 4.539 17
PHX CAK C 4.807 4.382 18
PHX OAL O 3.925 5.596 19
PHX OAP O 4.196 3.012 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PHX CAC CAB DOUBLE NONE 1
PHX CAC CAN SINGLE NONE 2
PHX CAB CAM SINGLE NONE 3
PHX CAM CAQ DOUBLE NONE 4
PHX CAQ CAR SINGLE NONE 5
PHX CAR CAN DOUBLE NONE 6
PHX CAN CAO SINGLE NONE 7
PHX CAO NAD DOUBLE NONE 8
PHX CAO OAS SINGLE NONE 9
PHX NAD CAE SINGLE ENDUPRIGHT 10
PHX OAS CAT SINGLE NONE 11
PHX CAT OAU DOUBLE NONE 12
PHX CAT CAE SINGLE ENDDOWNRIGHT 13
PHX CAE CAF DOUBLE NONE 14
PHX CAF NAG SINGLE ENDUPRIGHT 15
PHX NAG CAH SINGLE NONE 16
PHX CAH CAI SINGLE NONE 17
PHX CAI CAJ SINGLE NONE 18
PHX CAJ CAK SINGLE NONE 19
PHX CAK OAL DOUBLE NONE 20
PHX CAK OAP SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PHX MurckoScaffold S1 scaffold C=C1N=C(c2ccccc2)OC1=O InChI=1S/C10H7NO2/c1-7-10(12)13-9(11-7)8-5-3-2-4-6-8/h2-6H,1H2 QMVDSTMRMBTHIF-UHFFFAOYSA-N
PHX peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
PHX phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PHX CAC S1 1
PHX CAB S1 1
PHX CAM S1 1
PHX CAQ S1 1
PHX CAR S1 1
PHX CAN S1 1
PHX CAO S1 1
PHX NAD S1 1
PHX OAS S1 1
PHX CAT S1 1
PHX OAU S1 1
PHX CAE S1 1
PHX CAF S1 1
PHX OAU F1 1
PHX CAT F1 1
PHX CAE F1 1
PHX NAD F1 1
PHX CAC F2 1
PHX CAB F2 1
PHX CAM F2 1
PHX CAQ F2 1
PHX CAR F2 1
PHX CAN F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id PHX
_pdbe_chem_comp_rdkit_properties.exactmw 274.095
_pdbe_chem_comp_rdkit_properties.amw 274.276
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.214
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 135.146
_pdbe_chem_comp_rdkit_properties.tpsa 87.990
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.231
_pdbe_chem_comp_rdkit_properties.CrippenMR 71.761
_pdbe_chem_comp_rdkit_properties.chi0v 9.527
_pdbe_chem_comp_rdkit_properties.chi1v 4.915
_pdbe_chem_comp_rdkit_properties.chi2v 1.748
_pdbe_chem_comp_rdkit_properties.chi3v 1.748
_pdbe_chem_comp_rdkit_properties.chi4v 1.028
_pdbe_chem_comp_rdkit_properties.chi0n 23.527
_pdbe_chem_comp_rdkit_properties.chi1n 11.771
_pdbe_chem_comp_rdkit_properties.chi2n 1.748
_pdbe_chem_comp_rdkit_properties.chi3n 1.748
_pdbe_chem_comp_rdkit_properties.chi4n 1.028
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.630
_pdbe_chem_comp_rdkit_properties.kappa1 4.442
_pdbe_chem_comp_rdkit_properties.kappa2 6.512
_pdbe_chem_comp_rdkit_properties.kappa3 3.679
_pdbe_chem_comp_rdkit_properties.Phi 1.446
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PHX UniChem DrugBank DB08396
PHX UniChem 'Probes And Drugs' PD059073
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PHX CAC 4.303 -1.445 1.150 ETKDGv3 1
PHX CAB 5.545 -1.859 1.429 ETKDGv3 2
PHX CAM 6.708 -1.126 0.893 ETKDGv3 3
PHX CAQ 6.522 -0.046 0.126 ETKDGv3 4
PHX CAR 5.153 0.416 -0.186 ETKDGv3 5
PHX CAN 4.086 -0.245 0.298 ETKDGv3 6
PHX CAO 2.717 0.214 -0.012 ETKDGv3 7
PHX NAD 1.653 -0.391 0.431 ETKDGv3 8
PHX OAS 2.446 1.332 -0.806 ETKDGv3 9
PHX CAT 1.071 1.428 -0.857 ETKDGv3 10
PHX OAU 0.442 2.320 -1.484 ETKDGv3 11
PHX CAE 0.533 0.332 -0.070 ETKDGv3 12
PHX CAF -0.735 -0.010 0.189 ETKDGv3 13
PHX NAG -1.866 0.715 -0.313 ETKDGv3 14
PHX CAH -3.217 0.269 0.019 ETKDGv3 15
PHX CAI -4.270 1.189 -0.616 ETKDGv3 16
PHX CAJ -5.701 0.787 -0.235 ETKDGv3 17
PHX CAK -6.092 -0.523 -0.847 ETKDGv3 18
PHX OAL -6.437 -0.575 -2.057 ETKDGv3 19
PHX OAP -6.044 -1.686 -0.085 ETKDGv3 20
PHX HAC 3.459 -1.993 1.550 ETKDGv3 21
PHX HAB 5.700 -2.733 2.049 ETKDGv3 22
PHX HAM 7.711 -1.464 1.122 ETKDGv3 23
PHX HAQ 7.374 0.493 -0.268 ETKDGv3 24
PHX HAR 5.031 1.293 -0.809 ETKDGv3 25
PHX HAF -0.911 -0.880 0.811 ETKDGv3 26
PHX HAG -1.740 1.556 -0.917 ETKDGv3 27
PHX HAH1 -3.340 0.275 1.124 ETKDGv3 28
PHX HAH2 -3.355 -0.770 -0.350 ETKDGv3 29
PHX HAI1 -4.094 2.229 -0.266 ETKDGv3 30
PHX HAI2 -4.159 1.179 -1.723 ETKDGv3 31
PHX HAJ1 -5.798 0.730 0.871 ETKDGv3 32
PHX HAJ2 -6.402 1.572 -0.590 ETKDGv3 33
PHX HAP -6.293 -2.581 -0.489 ETKDGv3 34
#