data_PHI
#
_chem_comp.id PHI
_chem_comp.name IODO-PHENYLALANINE
_chem_comp.type 'L-PEPTIDE LINKING'
_chem_comp.pdbx_type ATOMP
_chem_comp.formula 'C9 H10 I N O2'
_chem_comp.mon_nstd_parent_comp_id PHE
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 291.086
_chem_comp.one_letter_code F
_chem_comp.three_letter_code PHI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1CZI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PHI N N N 0 1 N N N Y Y N 89.411 12.956 33.475 1.332 0.934 3.396 N PHI 1
PHI CA CA C 0 1 N N S Y N N 88.769 14.287 33.571 -0.008 0.450 3.750 CA PHI 2
PHI CB CB C 0 1 N N N N N N 88.535 14.653 35.020 -0.289 -0.859 3.012 CB PHI 3
PHI CG CG C 0 1 Y N N N N N 87.540 13.845 35.841 -0.216 -0.625 1.525 CG PHI 4
PHI CD1 CD1 C 0 1 Y N N N N N 87.921 12.755 36.628 0.985 -0.777 0.860 CD1 PHI 5
PHI CD2 CD2 C 0 1 Y N N N N N 86.175 14.142 35.889 -1.353 -0.263 0.827 CD2 PHI 6
PHI CE1 CE1 C 0 1 Y N N N N N 86.991 12.029 37.379 1.052 -0.562 -0.503 CE1 PHI 7
PHI CE2 CE2 C 0 1 Y N N N N N 85.265 13.415 36.645 -1.285 -0.043 -0.535 CE2 PHI 8
PHI CZ CZ C 0 1 Y N N N N N 85.625 12.318 37.437 -0.083 -0.195 -1.202 CZ PHI 9
PHI I I I 0 1 N N N N N N 84.721 11.611 38.165 0.017 0.130 -3.269 I PHI 10
PHI C C C 0 1 N N N Y N Y 89.665 15.290 32.853 -0.081 0.216 5.237 C PHI 11
PHI O O O 0 1 N N N Y N Y 90.893 15.161 32.923 0.911 -0.105 5.847 O PHI 12
PHI OXT OXT O 0 1 N Y N Y N Y 89.125 16.244 32.120 -1.248 0.364 5.883 OXT PHI 13
PHI H 1HN H 0 1 N N N Y Y N 89.568 12.709 32.498 1.368 0.977 2.388 H PHI 14
PHI H2 2HN H 0 1 N Y N Y Y N 88.877 12.239 33.967 1.983 0.216 3.678 H2 PHI 15
PHI HA HA H 0 1 N N N Y N N 87.766 14.285 33.082 -0.750 1.195 3.463 HA PHI 16
PHI HB2 1HB H 0 1 N N N N N N 89.515 14.656 35.550 0.452 -1.604 3.299 HB2 PHI 17
PHI HB3 2HB H 0 1 N N N N N N 88.252 15.730 35.075 -1.284 -1.218 3.275 HB3 PHI 18
PHI HD1 HD1 H 0 1 N N N N N N 88.983 12.460 36.657 1.871 -1.064 1.406 HD1 PHI 19
PHI HD2 HD2 H 0 1 N N N N N N 85.796 14.994 35.299 -2.292 -0.144 1.347 HD2 PHI 20
PHI HE1 HE1 H 0 1 N N N N N N 87.359 11.170 37.965 1.991 -0.680 -1.023 HE1 PHI 21
PHI HE2 HE2 H 0 1 N N N N N N 84.206 13.723 36.615 -2.172 0.244 -1.081 HE2 PHI 22
PHI HXT HXT H 0 1 N Y N Y N Y 89.683 16.869 31.672 -1.294 0.213 6.837 HXT PHI 23
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PHI N CA SING N N 1
PHI N H SING N N 2
PHI N H2 SING N N 3
PHI CA CB SING N N 4
PHI CA C SING N N 5
PHI CA HA SING N N 6
PHI CB CG SING N N 7
PHI CB HB2 SING N N 8
PHI CB HB3 SING N N 9
PHI CG CD1 DOUB Y N 10
PHI CG CD2 SING Y N 11
PHI CD1 CE1 SING Y N 12
PHI CD1 HD1 SING N N 13
PHI CD2 CE2 DOUB Y N 14
PHI CD2 HD2 SING N N 15
PHI CE1 CZ DOUB Y N 16
PHI CE1 HE1 SING N N 17
PHI CE2 CZ SING Y N 18
PHI CE2 HE2 SING N N 19
PHI CZ I SING N N 20
PHI C O DOUB N N 21
PHI C OXT SING N N 22
PHI OXT HXT SING N N 23
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PHI SMILES ACDLabs 10.04 'Ic1ccc(cc1)CC(C(=O)O)N'
PHI SMILES_CANONICAL CACTVS 3.341 'N[C@@H](Cc1ccc(I)cc1)C(O)=O'
PHI SMILES CACTVS 3.341 'N[CH](Cc1ccc(I)cc1)C(O)=O'
PHI SMILES_CANONICAL 'OpenEye OEToolkits' 1.5.0 'c1cc(ccc1C[C@@H](C(=O)O)N)I'
PHI SMILES 'OpenEye OEToolkits' 1.5.0 'c1cc(ccc1CC(C(=O)O)N)I'
PHI InChI InChI 1.03 'InChI=1S/C9H10INO2/c10-7-3-1-6(2-4-7)5-8(11)9(12)13/h1-4,8H,5,11H2,(H,12,13)/t8-/m0/s1'
PHI InChIKey InChI 1.03 PZNQZSRPDOEBMS-QMMMGPOBSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PHI 'SYSTEMATIC NAME' ACDLabs 10.04 4-iodo-L-phenylalanine
PHI 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.5.0 '(2S)-2-amino-3-(4-iodophenyl)propanoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PHI 'Create component' 1999-07-08 EBI
PHI 'Modify descriptor' 2011-06-04 RCSB
PHI 'Modify backbone' 2023-11-03 PDBE
PHI 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id PHI
_pdbx_chem_comp_pcm.modified_residue_id PHE
_pdbx_chem_comp_pcm.type Iodination
_pdbx_chem_comp_pcm.category 'Named protein modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom ?
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom ?
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_drugbank_details.comp_id PHI
_pdbe_chem_comp_drugbank_details.drugbank_id DB03660
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 4-Iodo-L-phenylalanine
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 24250-85-9
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
PHI 4-iodophenylalanine DrugBank ?
PHI p-Iodo-L-phenylalanine DrugBank ?
PHI p-iodophenylalanine DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id PHI
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03660
_pdbe_chem_comp_drugbank_classification.parent 'Phenylalanine and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as phenylalanine and derivatives. These are compounds containing phenylalanine or a derivative thereof resulting from reaction of phenylalanine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
PHI DB03660 'Dipeptidyl peptidase 4' Humans P27487 yes 1
PHI DB03660 'Aminopeptidase S' 'Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)' P80561 unknown 2
PHI DB03660 Endolysin 'Enterobacteria phage T4' P00720 unknown 3
PHI DB03660 Pseudomonalisin 'Pseudomonas sp. (strain 101)' P42790 unknown 4
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PHI N N 5.598 3.660 1
PHI CA C 5.598 2.160 2
PHI CB C 4.299 1.410 3
PHI CG C 4.299 -0.090 4
PHI CD1 C 3.000 -0.840 5
PHI CD2 C 5.598 -0.840 6
PHI CE1 C 3.000 -2.340 7
PHI CE2 C 5.598 -2.340 8
PHI CZ C 4.299 -3.090 9
PHI I I 4.299 -4.590 10
PHI C C 6.897 1.410 11
PHI O O 8.196 2.160 12
PHI OXT O 6.897 -0.090 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PHI CA N SINGLE BEGINDASH 1
PHI CA CB SINGLE NONE 2
PHI CA C SINGLE NONE 3
PHI CB CG SINGLE NONE 4
PHI CG CD1 DOUBLE NONE 5
PHI CG CD2 SINGLE NONE 6
PHI CD1 CE1 SINGLE NONE 7
PHI CD2 CE2 DOUBLE NONE 8
PHI CE1 CZ DOUBLE NONE 9
PHI CE2 CZ SINGLE NONE 10
PHI CZ I SINGLE NONE 11
PHI C O DOUBLE NONE 12
PHI C OXT SINGLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PHI MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
PHI peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
PHI phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PHI CG S1 1
PHI CD1 S1 1
PHI CD2 S1 1
PHI CE1 S1 1
PHI CE2 S1 1
PHI CZ S1 1
PHI O F1 1
PHI C F1 1
PHI CA F1 1
PHI N F1 1
PHI CG F2 1
PHI CD1 F2 1
PHI CE1 F2 1
PHI CZ F2 1
PHI CE2 F2 1
PHI CD2 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id PHI
_pdbe_chem_comp_rdkit_properties.exactmw 290.976
_pdbe_chem_comp_rdkit_properties.amw 291.088
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 23
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 104.336
_pdbe_chem_comp_rdkit_properties.tpsa 63.320
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.191
_pdbe_chem_comp_rdkit_properties.CrippenMR 58.208
_pdbe_chem_comp_rdkit_properties.chi0v 8.299
_pdbe_chem_comp_rdkit_properties.chi1v 4.150
_pdbe_chem_comp_rdkit_properties.chi2v 1.571
_pdbe_chem_comp_rdkit_properties.chi3v 1.571
_pdbe_chem_comp_rdkit_properties.chi4v 0.799
_pdbe_chem_comp_rdkit_properties.chi0n 16.142
_pdbe_chem_comp_rdkit_properties.chi1n 7.874
_pdbe_chem_comp_rdkit_properties.chi2n 1.031
_pdbe_chem_comp_rdkit_properties.chi3n 1.031
_pdbe_chem_comp_rdkit_properties.chi4n 0.529
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.620
_pdbe_chem_comp_rdkit_properties.kappa1 3.201
_pdbe_chem_comp_rdkit_properties.kappa2 4.570
_pdbe_chem_comp_rdkit_properties.kappa3 3.315
_pdbe_chem_comp_rdkit_properties.Phi 1.125
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PHI UniChem ChEMBL CHEMBL1235284
PHI UniChem DrugBank DB03660
PHI UniChem ChEBI 44964
PHI UniChem ZINC ZINC000000391104
PHI UniChem fdasrs J882Z73MPL
PHI UniChem ACTor 1991-81-7
PHI UniChem BRENDA 34466
PHI UniChem BRENDA 44648
PHI UniChem ChemicalBook CB4145428
PHI UniChem 'Probes And Drugs' PD005880
PHI UniChem CCDC HUKFUQ
PHI UniChem eMolecules 523425
PHI UniChem SureChEMBL SCHEMBL44619
PHI UniChem 'PubChem TPHARMA' 16146613
PHI UniChem PubChem 134497
PHI UniChem PubChem 6950455
PHI UniChem Mcule MCULE-6302870801
PHI UniChem ACTor 24250-85-9
PHI UniChem Nikkaji J1.054.119K
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PHI N -1.714 -0.791 1.306 ETKDGv3 1
PHI CA -1.611 0.461 0.552 ETKDGv3 2
PHI CB -0.643 0.300 -0.633 ETKDGv3 3
PHI CG 0.757 0.002 -0.161 ETKDGv3 4
PHI CD1 1.201 -1.265 -0.073 ETKDGv3 5
PHI CD2 1.643 1.114 0.266 ETKDGv3 6
PHI CE1 2.565 -1.544 0.423 ETKDGv3 7
PHI CE2 2.877 0.858 0.719 ETKDGv3 8
PHI CZ 3.363 -0.535 0.799 ETKDGv3 9
PHI I 5.309 -0.927 1.510 ETKDGv3 10
PHI C -2.966 0.898 0.063 ETKDGv3 11
PHI O -3.450 1.997 0.444 ETKDGv3 12
PHI OXT -3.689 0.089 -0.810 ETKDGv3 13
PHI H -2.154 -1.527 0.705 ETKDGv3 14
PHI H2 -2.345 -0.637 2.126 ETKDGv3 15
PHI HA -1.207 1.247 1.229 ETKDGv3 16
PHI HB2 -0.626 1.242 -1.226 ETKDGv3 17
PHI HB3 -1.001 -0.504 -1.314 ETKDGv3 18
PHI HD1 0.567 -2.095 -0.360 ETKDGv3 19
PHI HD2 1.292 2.137 0.215 ETKDGv3 20
PHI HE1 2.913 -2.567 0.482 ETKDGv3 21
PHI HE2 3.519 1.673 1.028 ETKDGv3 22
PHI HXT -4.602 0.372 -1.145 ETKDGv3 23
#