data_PFB
#
_chem_comp.id PFB
_chem_comp.name "2,3,4,5,6-PENTAFLUOROBENZYL ALCOHOL"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H3 F5 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 198.090
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PFB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1HLD
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PFB C1 C1 C 0 1 Y N N N N N 6.171 24.634 16.664 0.000 0.231 1.126 C1 PFB 1
PFB C2 C2 C 0 1 Y N N N N N 5.774 25.916 16.327 -1.198 0.157 0.438 C2 PFB 2
PFB C3 C3 C 0 1 Y N N N N N 4.431 26.233 16.233 -1.200 0.009 -0.939 C3 PFB 3
PFB C4 C4 C 0 1 Y N N N N N 3.475 25.277 16.475 -0.000 -0.066 -1.628 C4 PFB 4
PFB C5 C5 C 0 1 Y N N N N N 3.874 23.964 16.831 1.199 0.007 -0.939 C5 PFB 5
PFB C6 C6 C 0 1 Y N N N N N 5.236 23.624 16.932 1.199 0.162 0.437 C6 PFB 6
PFB C7 C7 C 0 1 N N N N N N 7.564 24.371 16.591 0.000 0.393 2.624 C7 PFB 7
PFB F2 F2 F 0 1 N N N N N N 6.686 26.814 16.089 -2.368 0.231 1.111 F2 PFB 8
PFB F3 F3 F 0 1 N N N N N N 4.030 27.437 15.929 -2.370 -0.062 -1.610 F3 PFB 9
PFB F4 F4 F 0 1 N N N N N N 2.223 25.641 16.347 -0.000 -0.210 -2.971 F4 PFB 10
PFB F5 F5 F 0 1 N N N N N N 2.979 23.046 17.072 2.369 -0.065 -1.610 F5 PFB 11
PFB F6 F6 F 0 1 N N N N N N 5.592 22.394 17.253 2.368 0.233 1.109 F6 PFB 12
PFB O1 O1 O 0 1 N N N N N N 7.980 23.828 17.816 0.000 -0.894 3.243 O1 PFB 13
PFB H71 1H7 H 0 1 N N N N N N 7.832 23.724 15.723 -0.889 0.944 2.930 H71 PFB 14
PFB H72 2H7 H 0 1 N N N N N N 8.154 25.270 16.299 0.891 0.943 2.930 H72 PFB 15
PFB HO1 HO1 H 0 1 N N N N N N 8.912 23.652 17.767 0.000 -0.745 4.198 HO1 PFB 16
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PFB C1 C2 DOUB Y N 1
PFB C1 C6 SING Y N 2
PFB C1 C7 SING N N 3
PFB C2 C3 SING Y N 4
PFB C2 F2 SING N N 5
PFB C3 C4 DOUB Y N 6
PFB C3 F3 SING N N 7
PFB C4 C5 SING Y N 8
PFB C4 F4 SING N N 9
PFB C5 C6 DOUB Y N 10
PFB C5 F5 SING N N 11
PFB C6 F6 SING N N 12
PFB C7 O1 SING N N 13
PFB C7 H71 SING N N 14
PFB C7 H72 SING N N 15
PFB O1 HO1 SING N N 16
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PFB SMILES ACDLabs 10.04 Fc1c(c(F)c(F)c(F)c1F)CO
PFB SMILES_CANONICAL CACTVS 3.341 OCc1c(F)c(F)c(F)c(F)c1F
PFB SMILES CACTVS 3.341 OCc1c(F)c(F)c(F)c(F)c1F
PFB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C(c1c(c(c(c(c1F)F)F)F)F)O
PFB SMILES "OpenEye OEToolkits" 1.5.0 C(c1c(c(c(c(c1F)F)F)F)F)O
PFB InChI InChI 1.03 InChI=1S/C7H3F5O/c8-3-2(1-13)4(9)6(11)7(12)5(3)10/h13H,1H2
PFB InChIKey InChI 1.03 PGJYYCIOYBZTPU-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PFB "SYSTEMATIC NAME" ACDLabs 10.04 (pentafluorophenyl)methanol
PFB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2,3,4,5,6-pentafluorophenyl)methanol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PFB 'Create component' 1999-07-08 RCSB
PFB 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id PFB
_pdbe_chem_comp_drugbank_details.drugbank_id DB01711
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name '2,3,4,5,6-Pentafluorobenzyl Alcohol'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 440-60-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id PFB
_pdbe_chem_comp_synonyms.name '2,3,4,5,6-Pentafluorobenzyl Alcohol'
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id PFB
_pdbe_chem_comp_drugbank_classification.drugbank_id DB01711
_pdbe_chem_comp_drugbank_classification.parent 'Benzyl alcohols'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as benzyl alcohols. These are organic compounds containing the phenylmethanol substructure.'
#
_pdbe_chem_comp_drugbank_targets.comp_id PFB
_pdbe_chem_comp_drugbank_targets.drugbank_id DB01711
_pdbe_chem_comp_drugbank_targets.name 'Alcohol dehydrogenase 1C'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P00326
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
PFB C1 C 5.598 0.660 1
PFB C2 C 4.299 -0.090 2
PFB C3 C 4.299 -1.590 3
PFB C4 C 5.598 -2.340 4
PFB C5 C 6.897 -1.590 5
PFB C6 C 6.897 -0.090 6
PFB C7 C 5.598 2.160 7
PFB F2 F 3.000 0.660 8
PFB F3 F 3.000 -2.340 9
PFB F4 F 5.598 -3.840 10
PFB F5 F 8.196 -2.340 11
PFB F6 F 8.196 0.660 12
PFB O1 O 6.897 2.910 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
PFB C1 C2 DOUBLE NONE 1
PFB C1 C6 SINGLE NONE 2
PFB C1 C7 SINGLE NONE 3
PFB C2 C3 SINGLE NONE 4
PFB C2 F2 SINGLE NONE 5
PFB C3 C4 DOUBLE NONE 6
PFB C3 F3 SINGLE NONE 7
PFB C4 C5 SINGLE NONE 8
PFB C4 F4 SINGLE NONE 9
PFB C5 C6 DOUBLE NONE 10
PFB C5 F5 SINGLE NONE 11
PFB C6 F6 SINGLE NONE 12
PFB C7 O1 SINGLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
PFB MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
PFB phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
PFB C1 S1 1
PFB C2 S1 1
PFB C3 S1 1
PFB C4 S1 1
PFB C5 S1 1
PFB C6 S1 1
PFB C1 F1 1
PFB C2 F1 1
PFB C3 F1 1
PFB C4 F1 1
PFB C5 F1 1
PFB C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id PFB
_pdbe_chem_comp_rdkit_properties.exactmw 198.010
_pdbe_chem_comp_rdkit_properties.amw 198.090
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 16
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 73.720
_pdbe_chem_comp_rdkit_properties.tpsa 20.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.820
_pdbe_chem_comp_rdkit_properties.CrippenMR 31.889
_pdbe_chem_comp_rdkit_properties.chi0v 5.798
_pdbe_chem_comp_rdkit_properties.chi1v 2.899
_pdbe_chem_comp_rdkit_properties.chi2v 1.312
_pdbe_chem_comp_rdkit_properties.chi3v 1.312
_pdbe_chem_comp_rdkit_properties.chi4v 0.695
_pdbe_chem_comp_rdkit_properties.chi0n 8.798
_pdbe_chem_comp_rdkit_properties.chi1n 4.307
_pdbe_chem_comp_rdkit_properties.chi2n 1.312
_pdbe_chem_comp_rdkit_properties.chi3n 1.312
_pdbe_chem_comp_rdkit_properties.chi4n 0.695
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.170
_pdbe_chem_comp_rdkit_properties.kappa1 6.309
_pdbe_chem_comp_rdkit_properties.kappa2 3.292
_pdbe_chem_comp_rdkit_properties.kappa3 1.370
_pdbe_chem_comp_rdkit_properties.Phi 1.598
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
PFB UniChem DrugBank DB01711
PFB UniChem ChEBI 44903
PFB UniChem ZINC ZINC000001627118
PFB UniChem fdasrs FYY8AJK1SP
PFB UniChem ACTor 440-60-8
PFB UniChem BRENDA 257380
PFB UniChem ChemicalBook CB4165262
PFB UniChem 'Probes And Drugs' PD008483
PFB UniChem 'EPA CompTox Dashboard' DTXSID00196013
PFB UniChem eMolecules 487533
PFB UniChem SureChEMBL SCHEMBL536295
PFB UniChem 'PubChem TPHARMA' 16460405
PFB UniChem PubChem 9923
PFB UniChem Mcule MCULE-1997598971
PFB UniChem Nikkaji J150.865B
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
PFB C1 -0.579 -0.016 -0.183 ETKDGv3 1
PFB C2 0.054 1.106 -0.578 ETKDGv3 2
PFB C3 1.531 1.179 -0.544 ETKDGv3 3
PFB C4 2.246 0.137 -0.102 ETKDGv3 4
PFB C5 1.559 -1.089 0.356 ETKDGv3 5
PFB C6 0.222 -1.163 0.322 ETKDGv3 6
PFB C7 -2.084 -0.092 -0.181 ETKDGv3 7
PFB F2 -0.648 2.185 -1.009 ETKDGv3 8
PFB F3 2.159 2.308 -0.959 ETKDGv3 9
PFB F4 3.600 0.204 -0.068 ETKDGv3 10
PFB F5 2.289 -2.136 0.815 ETKDGv3 11
PFB F6 -0.397 -2.290 0.757 ETKDGv3 12
PFB O1 -2.595 0.509 0.977 ETKDGv3 13
PFB H71 -2.494 0.434 -1.069 ETKDGv3 14
PFB H72 -2.428 -1.148 -0.253 ETKDGv3 15
PFB HO1 -2.434 -0.129 1.721 ETKDGv3 16
#