data_OVO
#
_chem_comp.id OVO
_chem_comp.name 4-[4-(phenylmethyl)phenyl]-1,3-oxazol-2-amine
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H14 N2 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 4-(4-benzylphenyl)-oxazol-2-amine
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-09-05
_chem_comp.pdbx_modified_date 2023-04-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 250.295
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OVO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8AVA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OVO N1 N1 N 0 1 N N N N N N -22.383 3.803 -7.916 5.960 1.424 -0.352 N1 OVO 1
OVO C1 C1 C 0 1 Y N N N N N -22.500 3.525 -6.622 4.863 0.586 -0.373 C1 OVO 2
OVO N2 N2 N 0 1 Y N N N N N -23.175 2.530 -5.996 3.689 0.855 0.141 N2 OVO 3
OVO C2 C2 C 0 1 Y N N N N N -22.946 2.740 -4.636 2.870 -0.208 -0.075 C2 OVO 4
OVO C3 C3 C 0 1 Y N N N N N -23.590 1.871 -3.658 1.451 -0.324 0.342 C3 OVO 5
OVO C4 C4 C 0 1 Y N N N N N -24.005 2.407 -2.446 0.836 0.723 1.027 C4 OVO 6
OVO C5 C5 C 0 1 Y N N N N N -24.696 1.638 -1.526 -0.484 0.610 1.413 C5 OVO 7
OVO C6 C6 C 0 1 Y N N N N N -24.977 0.301 -1.791 -1.197 -0.539 1.121 C6 OVO 8
OVO C7 C7 C 0 1 N N N N N N -25.691 -0.561 -0.783 -2.638 -0.655 1.545 C7 OVO 9
OVO C8 C8 C 0 1 Y N N N N N -26.848 0.081 -0.046 -3.528 -0.126 0.450 C8 OVO 10
OVO C9 C9 C 0 1 Y N N N N N -28.088 0.201 -0.647 -3.878 1.211 0.429 C9 OVO 11
OVO C10 C10 C 0 1 Y N N N N N -29.154 0.771 0.029 -4.695 1.696 -0.575 C10 OVO 12
OVO C11 C11 C 0 1 Y N N N N N -29.006 1.183 1.339 -5.161 0.844 -1.559 C11 OVO 13
OVO C12 C12 C 0 1 Y N N N N N -27.787 1.032 1.969 -4.810 -0.493 -1.538 C12 OVO 14
OVO C13 C13 C 0 1 Y N N N N N -26.717 0.486 1.276 -3.990 -0.977 -0.536 C13 OVO 15
OVO C14 C14 C 0 1 Y N N N N N -24.567 -0.226 -3.014 -0.592 -1.581 0.442 C14 OVO 16
OVO C15 C15 C 0 1 Y N N N N N -23.893 0.550 -3.944 0.726 -1.477 0.046 C15 OVO 17
OVO C16 C16 C 0 1 Y N N N N N -22.192 3.865 -4.482 3.587 -1.142 -0.743 C16 OVO 18
OVO O1 O1 O 0 1 Y N N N N N -21.903 4.350 -5.723 4.825 -0.636 -0.928 O1 OVO 19
OVO H1 H1 H 0 1 N N N N N N -22.899 3.133 -8.449 5.897 2.295 0.069 H1 OVO 20
OVO H2 H2 H 0 1 N N N N N N -22.743 4.719 -8.094 6.795 1.140 -0.755 H2 OVO 21
OVO H3 H3 H 0 1 N N N N N N -23.785 3.440 -2.218 1.392 1.620 1.256 H3 OVO 22
OVO H4 H4 H 0 1 N N N N N N -25.020 2.079 -0.595 -0.961 1.421 1.944 H4 OVO 23
OVO H5 H5 H 0 1 N N N N N N -26.080 -1.443 -1.313 -2.878 -1.702 1.734 H5 OVO 24
OVO H6 H6 H 0 1 N N N N N N -24.952 -0.880 -0.033 -2.798 -0.076 2.455 H6 OVO 25
OVO H7 H7 H 0 1 N N N N N N -28.227 -0.155 -1.657 -3.514 1.876 1.198 H7 OVO 26
OVO H8 H8 H 0 1 N N N N N N -30.104 0.894 -0.470 -4.969 2.740 -0.591 H8 OVO 27
OVO H9 H9 H 0 1 N N N N N N -29.840 1.621 1.868 -5.799 1.223 -2.343 H9 OVO 28
OVO H10 H10 H 0 1 N N N N N N -27.667 1.338 2.998 -5.175 -1.159 -2.307 H10 OVO 29
OVO H11 H11 H 0 1 N N N N N N -25.765 0.374 1.773 -3.713 -2.021 -0.523 H11 OVO 30
OVO H12 H12 H 0 1 N N N N N N -24.779 -1.260 -3.242 -1.153 -2.475 0.217 H12 OVO 31
OVO H13 H13 H 0 1 N N N N N N -23.604 0.124 -4.893 1.196 -2.289 -0.488 H13 OVO 32
OVO H14 H14 H 0 1 N N N N N N -21.879 4.296 -3.543 3.235 -2.109 -1.069 H14 OVO 33
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OVO N1 C1 SING N N 1
OVO C1 N2 DOUB Y N 2
OVO C1 O1 SING Y N 3
OVO N2 C2 SING Y N 4
OVO O1 C16 SING Y N 5
OVO C2 C16 DOUB Y N 6
OVO C2 C3 SING N N 7
OVO C15 C3 DOUB Y N 8
OVO C15 C14 SING Y N 9
OVO C3 C4 SING Y N 10
OVO C14 C6 DOUB Y N 11
OVO C4 C5 DOUB Y N 12
OVO C6 C5 SING Y N 13
OVO C6 C7 SING N N 14
OVO C7 C8 SING N N 15
OVO C9 C8 DOUB Y N 16
OVO C9 C10 SING Y N 17
OVO C8 C13 SING Y N 18
OVO C10 C11 DOUB Y N 19
OVO C13 C12 DOUB Y N 20
OVO C11 C12 SING Y N 21
OVO N1 H1 SING N N 22
OVO N1 H2 SING N N 23
OVO C4 H3 SING N N 24
OVO C5 H4 SING N N 25
OVO C7 H5 SING N N 26
OVO C7 H6 SING N N 27
OVO C9 H7 SING N N 28
OVO C10 H8 SING N N 29
OVO C11 H9 SING N N 30
OVO C12 H10 SING N N 31
OVO C13 H11 SING N N 32
OVO C14 H12 SING N N 33
OVO C15 H13 SING N N 34
OVO C16 H14 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OVO InChI InChI 1.06 InChI=1S/C16H14N2O/c17-16-18-15(11-19-16)14-8-6-13(7-9-14)10-12-4-2-1-3-5-12/h1-9,11H,10H2,(H2,17,18)
OVO InChIKey InChI 1.06 FZDQKNHCMWUWBD-UHFFFAOYSA-N
OVO SMILES_CANONICAL CACTVS 3.385 Nc1occ(n1)c2ccc(Cc3ccccc3)cc2
OVO SMILES CACTVS 3.385 Nc1occ(n1)c2ccc(Cc3ccccc3)cc2
OVO SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 c1ccc(cc1)Cc2ccc(cc2)c3coc(n3)N
OVO SMILES "OpenEye OEToolkits" 3.1.0.0 c1ccc(cc1)Cc2ccc(cc2)c3coc(n3)N
#
_pdbx_chem_comp_identifier.comp_id OVO
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 3.1.0.0
_pdbx_chem_comp_identifier.identifier 4-[4-(phenylmethyl)phenyl]-1,3-oxazol-2-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OVO 'Create component' 2022-09-05 PDBE
OVO 'Initial release' 2023-05-03 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id OVO
_pdbx_chem_comp_synonyms.name 4-(4-benzylphenyl)-oxazol-2-amine
_pdbx_chem_comp_synonyms.provenance AUTHOR
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id OVO
_pdbe_chem_comp_synonyms.name 4-(4-benzylphenyl)-oxazol-2-amine
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
OVO N1 N 5.265 5.836 1
OVO C1 C 6.147 4.623 2
OVO N2 N 5.684 3.196 3
OVO C2 C 6.897 2.314 4
OVO C3 C 6.897 0.814 5
OVO C4 C 8.196 0.064 6
OVO C5 C 8.196 -1.436 7
OVO C6 C 6.897 -2.186 8
OVO C7 C 6.897 -3.686 9
OVO C8 C 5.598 -4.436 10
OVO C9 C 5.598 -5.936 11
OVO C10 C 4.299 -6.686 12
OVO C11 C 3.000 -5.936 13
OVO C12 C 3.000 -4.436 14
OVO C13 C 4.299 -3.686 15
OVO C14 C 5.598 -1.436 16
OVO C15 C 5.598 0.064 17
OVO C16 C 8.111 3.196 18
OVO O1 O 7.647 4.623 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
OVO N1 C1 SINGLE NONE 1
OVO C1 N2 DOUBLE NONE 2
OVO C1 O1 SINGLE NONE 3
OVO N2 C2 SINGLE NONE 4
OVO O1 C16 SINGLE NONE 5
OVO C2 C16 DOUBLE NONE 6
OVO C2 C3 SINGLE NONE 7
OVO C15 C3 SINGLE NONE 8
OVO C15 C14 DOUBLE NONE 9
OVO C3 C4 DOUBLE NONE 10
OVO C14 C6 SINGLE NONE 11
OVO C4 C5 SINGLE NONE 12
OVO C6 C5 DOUBLE NONE 13
OVO C6 C7 SINGLE NONE 14
OVO C7 C8 SINGLE NONE 15
OVO C9 C8 DOUBLE NONE 16
OVO C9 C10 SINGLE NONE 17
OVO C8 C13 SINGLE NONE 18
OVO C10 C11 DOUBLE NONE 19
OVO C13 C12 DOUBLE NONE 20
OVO C11 C12 SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
OVO MurckoScaffold S1 scaffold c1ccc(Cc2ccc(-c3cocn3)cc2)cc1 InChI=1S/C16H13NO/c1-2-4-13(5-3-1)10-14-6-8-15(9-7-14)16-11-18-12-17-16/h1-9,11-12H,10H2 UMWCFNAQVBJEPT-UHFFFAOYSA-N
OVO oxazole F1 fragment c1cocn1 InChI=1S/C3H3NO/c1-2-5-3-4-1/h1-3H ZCQWOFVYLHDMMC-UHFFFAOYSA-N
OVO phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
OVO C1 S1 1
OVO N2 S1 1
OVO C2 S1 1
OVO C3 S1 1
OVO C4 S1 1
OVO C5 S1 1
OVO C6 S1 1
OVO C7 S1 1
OVO C8 S1 1
OVO C9 S1 1
OVO C10 S1 1
OVO C11 S1 1
OVO C12 S1 1
OVO C13 S1 1
OVO C14 S1 1
OVO C15 S1 1
OVO C16 S1 1
OVO O1 S1 1
OVO C16 F1 1
OVO C2 F1 1
OVO N2 F1 1
OVO C1 F1 1
OVO O1 F1 1
OVO C3 F2 1
OVO C15 F2 1
OVO C14 F2 1
OVO C6 F2 1
OVO C5 F2 1
OVO C4 F2 1
OVO C8 F2 2
OVO C9 F2 2
OVO C10 F2 2
OVO C11 F2 2
OVO C12 F2 2
OVO C13 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id OVO
_pdbe_chem_comp_rdkit_properties.exactmw 250.111
_pdbe_chem_comp_rdkit_properties.amw 250.301
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 33
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.062
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 131.050
_pdbe_chem_comp_rdkit_properties.tpsa 52.050
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.645
_pdbe_chem_comp_rdkit_properties.CrippenMR 72.921
_pdbe_chem_comp_rdkit_properties.chi0v 9.303
_pdbe_chem_comp_rdkit_properties.chi1v 5.079
_pdbe_chem_comp_rdkit_properties.chi2v 2.058
_pdbe_chem_comp_rdkit_properties.chi3v 2.058
_pdbe_chem_comp_rdkit_properties.chi4v 1.273
_pdbe_chem_comp_rdkit_properties.chi0n 23.303
_pdbe_chem_comp_rdkit_properties.chi1n 11.973
_pdbe_chem_comp_rdkit_properties.chi2n 2.058
_pdbe_chem_comp_rdkit_properties.chi3n 2.058
_pdbe_chem_comp_rdkit_properties.chi4n 1.273
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.550
_pdbe_chem_comp_rdkit_properties.kappa1 3.729
_pdbe_chem_comp_rdkit_properties.kappa2 4.981
_pdbe_chem_comp_rdkit_properties.kappa3 2.654
_pdbe_chem_comp_rdkit_properties.Phi 0.978
#
_pdbe_chem_comp_external_mappings.comp_id OVO
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 163348709
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
OVO N1 6.498 -0.245 -1.008 ETKDGv3 1
OVO C1 5.319 -0.333 -0.213 ETKDGv3 2
OVO N2 4.196 0.204 -0.560 ETKDGv3 3
OVO C2 3.307 -0.127 0.508 ETKDGv3 4
OVO C3 1.881 0.284 0.551 ETKDGv3 5
OVO C4 1.362 1.018 -0.452 ETKDGv3 6
OVO C5 -0.055 1.434 -0.428 ETKDGv3 7
OVO C6 -0.844 1.098 0.606 ETKDGv3 8
OVO C7 -2.298 1.481 0.621 ETKDGv3 9
OVO C8 -3.122 0.420 -0.058 ETKDGv3 10
OVO C9 -3.602 -0.628 0.637 ETKDGv3 11
OVO C10 -4.375 -1.684 -0.049 ETKDGv3 12
OVO C11 -4.590 -1.609 -1.368 ETKDGv3 13
OVO C12 -4.053 -0.470 -2.140 ETKDGv3 14
OVO C13 -3.356 0.491 -1.522 ETKDGv3 15
OVO C14 -0.284 0.282 1.708 ETKDGv3 16
OVO C15 0.998 -0.100 1.686 ETKDGv3 17
OVO C16 3.956 -0.840 1.424 ETKDGv3 18
OVO O1 5.264 -1.000 1.001 ETKDGv3 19
OVO H1 7.382 -0.697 -0.684 ETKDGv3 20
OVO H2 6.488 0.270 -1.916 ETKDGv3 21
OVO H3 1.969 1.316 -1.298 ETKDGv3 22
OVO H4 -0.447 2.010 -1.257 ETKDGv3 23
OVO H5 -2.640 1.624 1.669 ETKDGv3 24
OVO H6 -2.446 2.458 0.110 ETKDGv3 25
OVO H7 -3.425 -0.713 1.702 ETKDGv3 26
OVO H8 -4.765 -2.519 0.518 ETKDGv3 27
OVO H9 -5.155 -2.383 -1.871 ETKDGv3 28
OVO H10 -4.223 -0.417 -3.208 ETKDGv3 29
OVO H11 -2.961 1.320 -2.096 ETKDGv3 30
OVO H12 -0.915 -0.010 2.539 ETKDGv3 31
OVO H13 1.374 -0.695 2.506 ETKDGv3 32
OVO H14 3.560 -1.238 2.347 ETKDGv3 33
#