data_OH4
#
_chem_comp.id OH4
_chem_comp.name {2-[(3S)-3-methoxy-3-phenylpropyl]-1H-imidazol-4-yl}methanol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H18 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-06-24
_chem_comp.pdbx_modified_date 2019-12-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 246.305
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OH4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6PG7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OH4 N12 N1 N 0 1 Y N N N N N 20.414 5.071 -3.448 -3.044 0.928 1.325 N12 OH4 1
OH4 C13 C1 C 0 1 Y N N N N N 16.225 8.315 -3.160 2.760 -0.125 0.160 C13 OH4 2
OH4 C15 C2 C 0 1 Y N N N N N 16.224 9.104 -0.861 4.124 -1.658 -1.074 C15 OH4 3
OH4 C17 C3 C 0 1 Y N N N N N 14.204 8.215 -1.850 4.299 -1.552 1.312 C17 OH4 4
OH4 C01 C4 C 0 1 N N N N N N 15.946 10.099 -5.418 2.719 2.899 -0.783 C01 OH4 5
OH4 O02 O1 O 0 1 N N N N N N 17.105 9.347 -5.100 1.845 1.783 -0.967 O02 OH4 6
OH4 C03 C5 C 0 1 N N S N N N 16.931 8.081 -4.500 1.709 0.955 0.190 C03 OH4 7
OH4 C04 C6 C 0 1 N N N N N N 18.326 7.445 -4.441 0.319 0.315 0.198 C04 OH4 8
OH4 C05 C7 C 0 1 N N N N N N 18.337 5.931 -4.624 -0.743 1.404 0.353 C05 OH4 9
OH4 C06 C8 C 0 1 Y N N N N N 19.736 5.340 -4.564 -2.112 0.773 0.361 C06 OH4 10
OH4 N07 N2 N 0 1 Y N N N N N 20.511 4.994 -5.625 -2.592 -0.014 -0.563 N07 OH4 11
OH4 C08 C9 C 0 1 Y N N N N N 21.661 4.516 -5.156 -3.836 -0.386 -0.225 C08 OH4 12
OH4 C09 C10 C 0 1 N N N N N N 22.820 4.005 -6.019 -4.737 -1.292 -1.023 C09 OH4 13
OH4 O10 O2 O 0 1 N N N N N N 23.827 3.407 -5.234 -5.980 -1.452 -0.337 O10 OH4 14
OH4 C11 C11 C 0 1 Y N N N N N 21.592 4.574 -3.775 -4.135 0.188 0.956 C11 OH4 15
OH4 C14 C12 C 0 1 Y N N N N N 16.894 8.878 -2.062 3.156 -0.671 -1.046 C14 OH4 16
OH4 C16 C13 C 0 1 Y N N N N N 14.882 8.769 -0.752 4.696 -2.098 0.105 C16 OH4 17
OH4 C18 C14 C 0 1 Y N N N N N 14.874 7.991 -3.053 3.331 -0.565 1.339 C18 OH4 18
OH4 H1 H1 H 0 1 N N N N N N 20.084 5.221 -2.516 -2.956 1.460 2.131 H1 OH4 19
OH4 H2 H2 H 0 1 N N N N N N 16.746 9.537 -0.021 4.434 -2.084 -2.016 H2 OH4 20
OH4 H3 H3 H 0 1 N N N N N N 13.158 7.961 -1.763 4.747 -1.895 2.233 H3 OH4 21
OH4 H4 H4 H 0 1 N N N N N N 16.242 11.054 -5.876 2.768 3.478 -1.705 H4 OH4 22
OH4 H5 H5 H 0 1 N N N N N N 15.323 9.531 -6.125 2.339 3.529 0.021 H5 OH4 23
OH4 H6 H6 H 0 1 N N N N N N 15.373 10.295 -4.500 3.715 2.541 -0.525 H6 OH4 24
OH4 H7 H7 H 0 1 N N N N N N 16.286 7.449 -5.129 1.835 1.560 1.087 H7 OH4 25
OH4 H8 H8 H 0 1 N N N N N N 18.768 7.676 -3.461 0.159 -0.218 -0.740 H8 OH4 26
OH4 H9 H9 H 0 1 N N N N N N 18.942 7.892 -5.236 0.247 -0.385 1.030 H9 OH4 27
OH4 H10 H10 H 0 1 N N N N N N 17.896 5.692 -5.603 -0.584 1.937 1.290 H10 OH4 28
OH4 H11 H11 H 0 1 N N N N N N 17.729 5.476 -3.828 -0.671 2.104 -0.479 H11 OH4 29
OH4 H13 H13 H 0 1 N N N N N N 23.254 4.851 -6.572 -4.917 -0.853 -2.004 H13 OH4 30
OH4 H14 H14 H 0 1 N N N N N N 22.434 3.261 -6.731 -4.260 -2.265 -1.142 H14 OH4 31
OH4 H15 H15 H 0 1 N N N N N N 24.529 3.102 -5.797 -6.611 -2.025 -0.794 H15 OH4 32
OH4 H16 H16 H 0 1 N N N N N N 22.365 4.267 -3.087 -5.061 0.089 1.504 H16 OH4 33
OH4 H17 H17 H 0 1 N N N N N N 17.938 9.139 -2.149 2.709 -0.327 -1.967 H17 OH4 34
OH4 H18 H18 H 0 1 N N N N N N 14.358 8.934 0.178 5.453 -2.868 0.084 H18 OH4 35
OH4 H19 H19 H 0 1 N N N N N N 14.348 7.569 -3.897 3.022 -0.138 2.282 H19 OH4 36
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OH4 C09 O10 SING N N 1
OH4 C09 C08 SING N N 2
OH4 N07 C08 SING Y N 3
OH4 N07 C06 DOUB Y N 4
OH4 C01 O02 SING N N 5
OH4 C08 C11 DOUB Y N 6
OH4 O02 C03 SING N N 7
OH4 C05 C06 SING N N 8
OH4 C05 C04 SING N N 9
OH4 C06 N12 SING Y N 10
OH4 C03 C04 SING N N 11
OH4 C03 C13 SING N N 12
OH4 C11 N12 SING Y N 13
OH4 C13 C18 DOUB Y N 14
OH4 C13 C14 SING Y N 15
OH4 C18 C17 SING Y N 16
OH4 C14 C15 DOUB Y N 17
OH4 C17 C16 DOUB Y N 18
OH4 C15 C16 SING Y N 19
OH4 N12 H1 SING N N 20
OH4 C15 H2 SING N N 21
OH4 C17 H3 SING N N 22
OH4 C01 H4 SING N N 23
OH4 C01 H5 SING N N 24
OH4 C01 H6 SING N N 25
OH4 C03 H7 SING N N 26
OH4 C04 H8 SING N N 27
OH4 C04 H9 SING N N 28
OH4 C05 H10 SING N N 29
OH4 C05 H11 SING N N 30
OH4 C09 H13 SING N N 31
OH4 C09 H14 SING N N 32
OH4 O10 H15 SING N N 33
OH4 C11 H16 SING N N 34
OH4 C14 H17 SING N N 35
OH4 C16 H18 SING N N 36
OH4 C18 H19 SING N N 37
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OH4 SMILES ACDLabs 12.01 n2c(CCC(c1ccccc1)OC)nc(c2)CO
OH4 InChI InChI 1.03 InChI=1S/C14H18N2O2/c1-18-13(11-5-3-2-4-6-11)7-8-14-15-9-12(10-17)16-14/h2-6,9,13,17H,7-8,10H2,1H3,(H,15,16)/t13-/m0/s1
OH4 InChIKey InChI 1.03 CXHFIZNFHVDWKU-ZDUSSCGKSA-N
OH4 SMILES_CANONICAL CACTVS 3.385 CO[C@@H](CCc1[nH]cc(CO)n1)c2ccccc2
OH4 SMILES CACTVS 3.385 CO[CH](CCc1[nH]cc(CO)n1)c2ccccc2
OH4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CO[C@@H](CCc1[nH]cc(n1)CO)c2ccccc2
OH4 SMILES "OpenEye OEToolkits" 2.0.7 COC(CCc1[nH]cc(n1)CO)c2ccccc2
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OH4 "SYSTEMATIC NAME" ACDLabs 12.01 {2-[(3S)-3-methoxy-3-phenylpropyl]-1H-imidazol-4-yl}methanol
OH4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[2-[(3~{S})-3-methoxy-3-phenyl-propyl]-1~{H}-imidazol-4-yl]methanol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OH4 'Create component' 2019-06-24 RCSB
OH4 'Initial release' 2019-12-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
OH4 N12 N 8.267 1.050 1
OH4 C13 C 4.299 -2.840 2
OH4 C15 C 3.000 -5.090 3
OH4 C17 C 5.598 -5.090 4
OH4 C01 C 3.000 0.910 5
OH4 O02 O 3.000 -0.590 6
OH4 C03 C 4.299 -1.340 7
OH4 C04 C 5.598 -0.590 8
OH4 C05 C 5.598 0.910 9
OH4 C06 C 6.897 1.660 10
OH4 N07 N 7.054 3.152 11
OH4 C08 C 8.521 3.463 12
OH4 C09 C 9.131 4.834 13
OH4 O10 O 10.623 4.990 14
OH4 C11 C 9.271 2.164 15
OH4 C14 C 3.000 -3.590 16
OH4 C16 C 4.299 -5.840 17
OH4 C18 C 5.598 -3.590 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
OH4 C09 O10 SINGLE NONE 1
OH4 C09 C08 SINGLE NONE 2
OH4 N07 C08 SINGLE NONE 3
OH4 N07 C06 DOUBLE NONE 4
OH4 C01 O02 SINGLE NONE 5
OH4 C08 C11 DOUBLE NONE 6
OH4 O02 C03 SINGLE NONE 7
OH4 C05 C06 SINGLE NONE 8
OH4 C05 C04 SINGLE NONE 9
OH4 C06 N12 SINGLE NONE 10
OH4 C03 C04 SINGLE BEGINWEDGE 11
OH4 C03 C13 SINGLE NONE 12
OH4 C11 N12 SINGLE NONE 13
OH4 C13 C18 DOUBLE NONE 14
OH4 C13 C14 SINGLE NONE 15
OH4 C18 C17 SINGLE NONE 16
OH4 C14 C15 DOUBLE NONE 17
OH4 C17 C16 DOUBLE NONE 18
OH4 C15 C16 SINGLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
OH4 MurckoScaffold S1 scaffold 'c1ccc(CCCc2ncc[nH]2)cc1' InChI=1S/C12H14N2/c1-2-5-11(6-3-1)7-4-8-12-13-9-10-14-12/h1-3,5-6,9-10H,4,7-8H2,(H,13,14) LIWJJVCHPAIVLV-UHFFFAOYSA-N
OH4 imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
OH4 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
OH4 N12 S1 1
OH4 C13 S1 1
OH4 C15 S1 1
OH4 C17 S1 1
OH4 C03 S1 1
OH4 C04 S1 1
OH4 C05 S1 1
OH4 C06 S1 1
OH4 N07 S1 1
OH4 C08 S1 1
OH4 C11 S1 1
OH4 C14 S1 1
OH4 C16 S1 1
OH4 C18 S1 1
OH4 C08 F1 1
OH4 C11 F1 1
OH4 N12 F1 1
OH4 C06 F1 1
OH4 N07 F1 1
OH4 C13 F2 1
OH4 C18 F2 1
OH4 C17 F2 1
OH4 C16 F2 1
OH4 C15 F2 1
OH4 C14 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id OH4
_pdbe_chem_comp_rdkit_properties.exactmw 246.137
_pdbe_chem_comp_rdkit_properties.amw 246.310
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 36
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.357
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 132.084
_pdbe_chem_comp_rdkit_properties.tpsa 58.140
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.058
_pdbe_chem_comp_rdkit_properties.CrippenMR 68.226
_pdbe_chem_comp_rdkit_properties.chi0v 8.711
_pdbe_chem_comp_rdkit_properties.chi1v 4.507
_pdbe_chem_comp_rdkit_properties.chi2v 1.699
_pdbe_chem_comp_rdkit_properties.chi3v 1.699
_pdbe_chem_comp_rdkit_properties.chi4v 0.979
_pdbe_chem_comp_rdkit_properties.chi0n 26.711
_pdbe_chem_comp_rdkit_properties.chi1n 13.362
_pdbe_chem_comp_rdkit_properties.chi2n 1.699
_pdbe_chem_comp_rdkit_properties.chi3n 1.699
_pdbe_chem_comp_rdkit_properties.chi4n 0.979
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.650
_pdbe_chem_comp_rdkit_properties.kappa1 3.083
_pdbe_chem_comp_rdkit_properties.kappa2 6.328
_pdbe_chem_comp_rdkit_properties.kappa3 3.182
_pdbe_chem_comp_rdkit_properties.Phi 1.084
#
_pdbe_chem_comp_external_mappings.comp_id OH4
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 145704655
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
OH4 N12 2.407 -1.161 -0.822 ETKDGv3 1
OH4 C13 -2.520 -0.035 -0.718 ETKDGv3 2
OH4 C15 -3.581 -1.304 -2.530 ETKDGv3 3
OH4 C17 -3.665 -2.155 -0.247 ETKDGv3 4
OH4 C01 -1.931 2.921 1.205 ETKDGv3 5
OH4 O02 -1.947 1.521 1.032 ETKDGv3 6
OH4 C03 -1.692 1.172 -0.322 ETKDGv3 7
OH4 C04 -0.188 0.900 -0.542 ETKDGv3 8
OH4 C05 0.387 -0.156 0.413 ETKDGv3 9
OH4 C06 1.857 -0.317 0.184 ETKDGv3 10
OH4 N07 2.752 0.354 0.837 ETKDGv3 11
OH4 C08 3.996 -0.052 0.268 ETKDGv3 12
OH4 C09 5.330 0.405 0.769 ETKDGv3 13
OH4 O10 5.769 -0.436 1.800 ETKDGv3 14
OH4 C11 3.801 -0.942 -0.692 ETKDGv3 15
OH4 C14 -2.882 -0.229 -2.146 ETKDGv3 16
OH4 C16 -3.994 -2.312 -1.534 ETKDGv3 17
OH4 C18 -2.890 -0.972 0.181 ETKDGv3 18
OH4 H1 1.909 -1.794 -1.486 ETKDGv3 19
OH4 H2 -3.842 -1.440 -3.572 ETKDGv3 20
OH4 H3 -3.962 -2.895 0.484 ETKDGv3 21
OH4 H4 -2.047 3.145 2.285 ETKDGv3 22
OH4 H5 -0.968 3.364 0.870 ETKDGv3 23
OH4 H6 -2.783 3.394 0.669 ETKDGv3 24
OH4 H7 -1.985 1.992 -1.023 ETKDGv3 25
OH4 H8 -0.023 0.576 -1.593 ETKDGv3 26
OH4 H9 0.370 1.852 -0.404 ETKDGv3 27
OH4 H10 -0.104 -1.137 0.240 ETKDGv3 28
OH4 H11 0.212 0.142 1.469 ETKDGv3 29
OH4 H13 5.232 1.437 1.166 ETKDGv3 30
OH4 H14 6.072 0.429 -0.061 ETKDGv3 31
OH4 H15 6.100 -1.266 1.368 ETKDGv3 32
OH4 H16 4.566 -1.440 -1.273 ETKDGv3 33
OH4 H17 -2.579 0.501 -2.887 ETKDGv3 34
OH4 H18 -4.560 -3.180 -1.848 ETKDGv3 35
OH4 H19 -2.618 -0.882 1.225 ETKDGv3 36
#