data_O6K
#
_chem_comp.id O6K
_chem_comp.name
'~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate'
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C31 H41 N5 O7'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms '(S,S,S)-13b; 13b-K; ketoamide inhibitor 13b (bound)'
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-02-17
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 595.687
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code O6K
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6Y2F
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
O6K O26 O1 O 0 1 N N N N N N 11.831 -5.792 23.341 4.974 0.538 0.530 O26 O6K 1
O6K C24 C1 C 0 1 N N N N N N 11.055 -5.520 22.439 5.706 -0.404 0.758 C24 O6K 2
O6K O25 O2 O 0 1 N N N N N N 10.794 -6.486 21.388 7.042 -0.234 0.761 O25 O6K 3
O6K C27 C2 C 0 1 N N N N N N 11.592 -7.649 21.100 7.537 1.103 0.483 C27 O6K 4
O6K C31 C3 C 0 1 N N N N N N 11.566 -8.561 22.339 6.996 2.076 1.533 C31 O6K 5
O6K C32 C4 C 0 1 N N N N N N 11.003 -8.363 19.874 9.066 1.101 0.530 C32 O6K 6
O6K C33 C5 C 0 1 N N N N N N 13.034 -7.252 20.756 7.069 1.541 -0.906 C33 O6K 7
O6K N23 N1 N 0 1 N N N N N N 10.377 -4.374 22.318 5.181 -1.619 1.014 N23 O6K 8
O6K C19 C6 C 0 1 N N N N N N 10.511 -3.257 23.071 3.792 -1.773 1.123 C19 O6K 9
O6K C21 C7 C 0 1 N N N N N N 9.776 -2.076 22.588 2.950 -1.441 0.040 C21 O6K 10
O6K O22 O3 O 0 1 N N N N N N 9.071 -2.127 21.535 3.429 -1.017 -0.999 O22 O6K 11
O6K C18 C8 C 0 1 N N N N N N 11.312 -3.134 24.223 3.237 -2.253 2.277 C18 O6K 12
O6K C17 C9 C 0 1 N N N N N N 11.391 -1.923 24.880 1.845 -2.398 2.359 C17 O6K 13
O6K C16 C10 C 0 1 N N N N N N 10.667 -0.827 24.422 1.066 -2.066 1.304 C16 O6K 14
O6K N15 N2 N 0 1 N N N N N N 9.874 -0.879 23.325 1.617 -1.594 0.154 N15 O6K 15
O6K C20 C11 C 0 1 N N S N N N 9.148 0.279 22.802 0.749 -1.247 -0.975 C20 O6K 16
O6K C22 C12 C 0 1 N N N N N N 9.003 1.431 23.806 -0.035 -2.486 -1.414 C22 O6K 17
O6K C29 C13 C 0 1 N N N N N N 8.204 0.991 25.035 0.935 -3.537 -1.957 C29 O6K 18
O6K C34 C14 C 0 1 N N N N N N 7.462 2.042 25.855 0.356 -4.900 -2.342 C34 O6K 19
O6K C30 C15 C 0 1 N N N N N N 6.684 1.164 24.883 0.804 -3.924 -3.432 C30 O6K 20
O6K C36 C16 C 0 1 N N N N N N 9.908 0.711 21.576 -0.213 -0.166 -0.555 C36 O6K 21
O6K O37 O4 O 0 1 N N N N N N 11.128 0.554 21.519 -0.178 0.271 0.576 O37 O6K 22
O6K N38 N3 N 0 1 N N N N N N 9.195 1.270 20.584 -1.114 0.314 -1.435 N38 O6K 23
O6K C40 C17 C 0 1 N N S N N N 9.796 1.792 19.396 -1.975 1.438 -1.062 C40 O6K 24
O6K C42 C18 C 0 1 N N N N N N 9.250 1.152 18.080 -1.203 2.749 -1.224 C42 O6K 25
O6K C45 C19 C 0 1 N N S N N N 9.773 -0.250 17.989 -2.074 3.916 -0.755 C45 O6K 26
O6K C47 C20 C 0 1 N N N N N N 9.197 -1.141 16.910 -2.342 3.812 0.730 C47 O6K 27
O6K O48 O5 O 0 1 N N N N N N 8.004 -1.151 16.621 -3.147 3.062 1.240 O48 O6K 28
O6K N49 N4 N 0 1 N N N N N N 10.173 -1.911 16.400 -1.559 4.673 1.403 N49 O6K 29
O6K C51 C21 C 0 1 N N N N N N 11.469 -1.705 17.056 -0.690 5.427 0.491 C51 O6K 30
O6K C54 C22 C 0 1 N N N N N N 11.278 -0.341 17.708 -1.316 5.254 -0.914 C54 O6K 31
O6K C57 C23 C 0 1 N N R N N N 9.601 3.286 19.630 -3.208 1.458 -1.968 C57 O6K 32
O6K O40 O6 O 0 1 N N N N N N 9.919 3.762 20.992 -2.798 1.604 -3.329 O40 O6K 33
O6K C35 C24 C 0 1 N N N N N N 10.554 4.044 18.797 -3.970 0.167 -1.808 C35 O6K 34
O6K O41 O7 O 0 1 N N N N N N 10.478 3.883 17.593 -4.066 -0.600 -2.743 O41 O6K 35
O6K N36 N5 N 0 1 N N N N N N 11.356 4.866 19.534 -4.544 -0.135 -0.627 N36 O6K 36
O6K C13 C25 C 0 1 N N N N N N 12.370 5.770 18.992 -5.284 -1.390 -0.472 C13 O6K 37
O6K C14 C26 C 0 1 Y N N N N N 13.730 5.087 18.915 -5.822 -1.485 0.933 C14 O6K 38
O6K C28 C27 C 0 1 Y N N N N N 13.937 3.812 19.442 -7.074 -0.980 1.229 C28 O6K 39
O6K C26 C28 C 0 1 Y N N N N N 15.198 3.215 19.371 -7.567 -1.067 2.517 C26 O6K 40
O6K C25 C29 C 0 1 Y N N N N N 16.267 3.890 18.768 -6.809 -1.660 3.509 C25 O6K 41
O6K C23 C30 C 0 1 Y N N N N N 16.070 5.166 18.238 -5.557 -2.165 3.213 C23 O6K 42
O6K C15 C31 C 0 1 Y N N N N N 14.805 5.757 18.314 -5.066 -2.084 1.923 C15 O6K 43
O6K H1 H1 H 0 1 N N N N N N 11.993 -8.024 23.199 7.329 1.764 2.523 H1 O6K 44
O6K H2 H2 H 0 1 N N N N N N 10.527 -8.845 22.563 7.367 3.079 1.324 H2 O6K 45
O6K H3 H3 H 0 1 N N N N N N 12.159 -9.466 22.141 5.906 2.077 1.500 H3 O6K 46
O6K H4 H4 H 0 1 N N N N N N 9.966 -8.663 20.087 9.451 0.408 -0.218 H4 O6K 47
O6K H5 H5 H 0 1 N N N N N N 11.018 -7.682 19.011 9.437 2.104 0.321 H5 O6K 48
O6K H6 H6 H 0 1 N N N N N N 11.603 -9.256 19.647 9.399 0.789 1.520 H6 O6K 49
O6K H7 H7 H 0 1 N N N N N N 13.488 -6.736 21.615 5.980 1.543 -0.940 H7 O6K 50
O6K H8 H8 H 0 1 N N N N N N 13.617 -8.155 20.521 7.441 2.544 -1.115 H8 O6K 51
O6K H9 H9 H 0 1 N N N N N N 13.031 -6.580 19.885 7.455 0.848 -1.654 H9 O6K 52
O6K H10 H10 H 0 1 N N N N N N 9.694 -4.338 21.589 5.765 -2.386 1.124 H10 O6K 53
O6K H11 H11 H 0 1 N N N N N N 11.864 -3.986 24.592 3.864 -2.517 3.116 H11 O6K 54
O6K H12 H12 H 0 1 N N N N N N 12.018 -1.826 25.754 1.394 -2.776 3.265 H12 O6K 55
O6K H13 H13 H 0 1 N N N N N N 10.740 0.104 24.964 -0.005 -2.182 1.375 H13 O6K 56
O6K H14 H14 H 0 1 N N N N N N 8.140 -0.037 22.495 1.358 -0.889 -1.804 H14 O6K 57
O6K H15 H15 H 0 1 N N N N N N 10.004 1.758 24.126 -0.575 -2.896 -0.561 H15 O6K 58
O6K H16 H16 H 0 1 N N N N N N 8.482 2.269 23.319 -0.744 -2.208 -2.194 H16 O6K 59
O6K H17 H17 H 0 1 N N N N N N 8.554 0.093 25.566 1.937 -3.518 -1.528 H17 O6K 60
O6K H18 H18 H 0 1 N N N N N N 7.605 3.110 25.635 0.978 -5.778 -2.167 H18 O6K 61
O6K H19 H19 H 0 1 N N N N N N 7.337 1.904 26.939 -0.715 -5.048 -2.208 H19 O6K 62
O6K H20 H20 H 0 1 N N N N N N 6.269 1.597 23.961 0.027 -3.430 -4.015 H20 O6K 63
O6K H21 H21 H 0 1 N N N N N N 6.001 0.391 25.265 1.720 -4.160 -3.973 H21 O6K 64
O6K H22 H22 H 0 1 N N N N N N 8.201 1.323 20.681 -1.191 -0.085 -2.316 H22 O6K 65
O6K H23 H23 H 0 1 N N N N N N 10.877 1.590 19.429 -2.289 1.327 -0.024 H23 O6K 66
O6K H24 H24 H 0 1 N N N N N N 9.593 1.735 17.212 -0.293 2.711 -0.625 H24 O6K 67
O6K H25 H25 H 0 1 N N N N N N 8.150 1.139 18.101 -0.941 2.889 -2.273 H25 O6K 68
O6K H26 H26 H 0 1 N N N N N N 9.590 -0.740 18.957 -3.011 3.939 -1.312 H26 O6K 69
O6K H27 H27 H 0 1 N N N N N N 10.031 -2.558 15.651 -1.566 4.781 2.366 H27 O6K 70
O6K H28 H28 H 0 1 N N N N N N 11.665 -2.484 17.808 -0.675 6.481 0.770 H28 O6K 71
O6K H29 H29 H 0 1 N N N N N N 12.290 -1.687 16.324 0.320 5.018 0.507 H29 O6K 72
O6K H30 H30 H 0 1 N N N N N N 11.852 -0.275 18.644 -0.544 5.178 -1.679 H30 O6K 73
O6K H31 H31 H 0 1 N N N N N N 11.594 0.462 17.026 -2.005 6.070 -1.138 H31 O6K 74
O6K H34 H34 H 0 1 N N N N N N 11.241 4.849 20.527 -4.467 0.478 0.120 H34 O6K 75
O6K H35 H35 H 0 1 N N N N N N 12.448 6.653 19.643 -6.111 -1.414 -1.181 H35 O6K 76
O6K H36 H36 H 0 1 N N N N N N 12.068 6.084 17.982 -4.617 -2.231 -0.663 H36 O6K 77
O6K H37 H37 H 0 1 N N N N N N 13.118 3.284 19.907 -7.666 -0.516 0.454 H37 O6K 78
O6K H38 H38 H 0 1 N N N N N N 15.349 2.228 19.783 -8.545 -0.671 2.749 H38 O6K 79
O6K H39 H39 H 0 1 N N N N N N 17.240 3.425 18.713 -7.194 -1.727 4.516 H39 O6K 80
O6K H40 H40 H 0 1 N N N N N N 16.889 5.694 17.772 -4.966 -2.633 3.987 H40 O6K 81
O6K H41 H41 H 0 1 N N N N N N 14.654 6.744 17.904 -4.088 -2.479 1.692 H41 O6K 82
O6K H32 H32 H 0 1 N N N N N N 8.569 3.563 19.367 -3.850 2.295 -1.691 H32 O6K 83
O6K H33 H33 H 0 1 N N N N N N 9.352 3.329 21.620 -2.223 0.893 -3.645 H33 O6K 84
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
O6K N49 C47 SING N N 1
O6K N49 C51 SING N N 2
O6K O48 C47 DOUB N N 3
O6K C47 C45 SING N N 4
O6K C51 C54 SING N N 5
O6K O41 C35 DOUB N N 6
O6K C54 C45 SING N N 7
O6K C45 C42 SING N N 8
O6K C42 C40 SING N N 9
O6K C23 C15 DOUB Y N 10
O6K C23 C25 SING Y N 11
O6K C15 C14 SING Y N 12
O6K C25 C26 DOUB Y N 13
O6K C35 N36 SING N N 14
O6K C35 C57 SING N N 15
O6K C14 C13 SING N N 16
O6K C14 C28 DOUB Y N 17
O6K C13 N36 SING N N 18
O6K C26 C28 SING Y N 19
O6K C40 C57 SING N N 20
O6K C40 N38 SING N N 21
O6K C57 O40 SING N N 22
O6K C32 C27 SING N N 23
O6K N38 C36 SING N N 24
O6K C33 C27 SING N N 25
O6K C27 O25 SING N N 26
O6K C27 C31 SING N N 27
O6K O25 C24 SING N N 28
O6K O37 C36 DOUB N N 29
O6K O22 C21 DOUB N N 30
O6K C36 C20 SING N N 31
O6K N23 C24 SING N N 32
O6K N23 C19 SING N N 33
O6K C24 O26 DOUB N N 34
O6K C21 C19 SING N N 35
O6K C21 N15 SING N N 36
O6K C20 N15 SING N N 37
O6K C20 C22 SING N N 38
O6K C19 C18 DOUB N N 39
O6K N15 C16 SING N N 40
O6K C22 C29 SING N N 41
O6K C18 C17 SING N N 42
O6K C16 C17 DOUB N N 43
O6K C30 C29 SING N N 44
O6K C30 C34 SING N N 45
O6K C29 C34 SING N N 46
O6K C31 H1 SING N N 47
O6K C31 H2 SING N N 48
O6K C31 H3 SING N N 49
O6K C32 H4 SING N N 50
O6K C32 H5 SING N N 51
O6K C32 H6 SING N N 52
O6K C33 H7 SING N N 53
O6K C33 H8 SING N N 54
O6K C33 H9 SING N N 55
O6K N23 H10 SING N N 56
O6K C18 H11 SING N N 57
O6K C17 H12 SING N N 58
O6K C16 H13 SING N N 59
O6K C20 H14 SING N N 60
O6K C22 H15 SING N N 61
O6K C22 H16 SING N N 62
O6K C29 H17 SING N N 63
O6K C34 H18 SING N N 64
O6K C34 H19 SING N N 65
O6K C30 H20 SING N N 66
O6K C30 H21 SING N N 67
O6K N38 H22 SING N N 68
O6K C40 H23 SING N N 69
O6K C42 H24 SING N N 70
O6K C42 H25 SING N N 71
O6K C45 H26 SING N N 72
O6K N49 H27 SING N N 73
O6K C51 H28 SING N N 74
O6K C51 H29 SING N N 75
O6K C54 H30 SING N N 76
O6K C54 H31 SING N N 77
O6K N36 H34 SING N N 78
O6K C13 H35 SING N N 79
O6K C13 H36 SING N N 80
O6K C28 H37 SING N N 81
O6K C26 H38 SING N N 82
O6K C25 H39 SING N N 83
O6K C23 H40 SING N N 84
O6K C15 H41 SING N N 85
O6K C57 H32 SING N N 86
O6K O40 H33 SING N N 87
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
O6K InChI InChI 1.06 'InChI=1S/C31H41N5O7/c1-31(2,3)43-30(42)35-22-10-7-15-36(29(22)41)24(16-19-11-12-19)27(39)34-23(17-21-13-14-32-26(21)38)25(37)28(40)33-18-20-8-5-4-6-9-20/h4-10,15,19,21,23-25,37H,11-14,16-18H2,1-3H3,(H,32,38)(H,33,40)(H,34,39)(H,35,42)/t21-,23-,24-,25+/m0/s1'
O6K InChIKey InChI 1.06 FRACPXUHUTXLCX-BELIEFIBSA-N
O6K SMILES_CANONICAL CACTVS 3.385 'CC(C)(C)OC(=O)NC1=CC=CN([C@@H](CC2CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)C(=O)NCc4ccccc4)C1=O'
O6K SMILES CACTVS 3.385 'CC(C)(C)OC(=O)NC1=CC=CN([CH](CC2CC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)C(=O)NCc4ccccc4)C1=O'
O6K SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'CC(C)(C)OC(=O)NC1=CC=CN(C1=O)[C@@H](CC2CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](C(=O)NCc4ccccc4)O'
O6K SMILES 'OpenEye OEToolkits' 2.0.7 'CC(C)(C)OC(=O)NC1=CC=CN(C1=O)C(CC2CC2)C(=O)NC(CC3CCNC3=O)C(C(=O)NCc4ccccc4)O'
#
_pdbx_chem_comp_identifier.comp_id O6K
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program 'OpenEye OEToolkits'
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
'~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate'
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 O6K '(S,S,S)-13b' AUTHOR ?
2 O6K 13b-K AUTHOR ?
3 O6K 'ketoamide inhibitor 13b (bound)' AUTHOR ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
O6K 'Create component' 2020-02-17 PDBE
O6K 'Initial release' 2020-03-04 RCSB
O6K 'Modify synonyms' 2023-02-28 PDBE
O6K 'Modify synonyms' 2023-08-13 PDBE
O6K 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id O6K
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C57
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
O6K (S,S,S)-13b wwPDB ?
O6K 13b-K wwPDB ?
O6K 'ketoamide inhibitor 13b (bound)' wwPDB ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
O6K O26 O 7.098 4.702 1
O6K C24 C 5.799 3.952 2
O6K O25 O 4.500 4.702 3
O6K C27 C 4.500 6.202 4
O6K C31 C 6.000 6.202 5
O6K C32 C 4.500 7.702 6
O6K C33 C 3.000 6.202 7
O6K N23 N 5.799 2.452 8
O6K C19 C 7.098 1.702 9
O6K C21 C 7.098 0.202 10
O6K O22 O 5.799 -0.548 11
O6K C18 C 8.397 2.452 12
O6K C17 C 9.696 1.702 13
O6K C16 C 9.696 0.202 14
O6K N15 N 8.397 -0.548 15
O6K C20 C 8.397 -2.048 16
O6K C22 C 7.098 -2.798 17
O6K C29 C 7.098 -4.298 18
O6K C34 C 7.848 -5.597 19
O6K C30 C 6.348 -5.597 20
O6K C36 C 9.696 -2.798 21
O6K O37 O 9.696 -4.298 22
O6K N38 N 10.995 -2.048 23
O6K C40 C 12.294 -2.798 24
O6K C42 C 12.294 -4.298 25
O6K C45 C 13.593 -5.048 26
O6K C47 C 13.750 -6.540 27
O6K O48 O 12.635 -7.544 28
O6K N49 N 15.217 -6.852 29
O6K C51 C 15.967 -5.553 30
O6K C54 C 14.963 -4.438 31
O6K C57 C 13.593 -2.048 32
O6K O40 O 14.892 -2.798 33
O6K C35 C 13.593 -0.548 34
O6K O41 O 12.294 0.202 35
O6K N36 N 14.892 0.202 36
O6K C13 C 14.892 1.702 37
O6K C14 C 16.191 2.452 38
O6K C28 C 17.490 1.702 39
O6K C26 C 18.790 2.452 40
O6K C25 C 18.790 3.952 41
O6K C23 C 17.490 4.702 42
O6K C15 C 16.191 3.952 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
O6K N49 C47 SINGLE NONE 1
O6K N49 C51 SINGLE NONE 2
O6K O48 C47 DOUBLE NONE 3
O6K C47 C45 SINGLE NONE 4
O6K C51 C54 SINGLE NONE 5
O6K O41 C35 DOUBLE NONE 6
O6K C54 C45 SINGLE NONE 7
O6K C45 C42 SINGLE BEGINDASH 8
O6K C40 C42 SINGLE BEGINDASH 9
O6K C23 C15 DOUBLE NONE 10
O6K C23 C25 SINGLE NONE 11
O6K C15 C14 SINGLE NONE 12
O6K C25 C26 DOUBLE NONE 13
O6K C35 N36 SINGLE NONE 14
O6K C35 C57 SINGLE NONE 15
O6K C14 C13 SINGLE NONE 16
O6K C14 C28 DOUBLE NONE 17
O6K C13 N36 SINGLE NONE 18
O6K C26 C28 SINGLE NONE 19
O6K C40 C57 SINGLE NONE 20
O6K C40 N38 SINGLE NONE 21
O6K C57 O40 SINGLE BEGINDASH 22
O6K C32 C27 SINGLE NONE 23
O6K N38 C36 SINGLE NONE 24
O6K C33 C27 SINGLE NONE 25
O6K C27 O25 SINGLE NONE 26
O6K C27 C31 SINGLE NONE 27
O6K O25 C24 SINGLE NONE 28
O6K O37 C36 DOUBLE NONE 29
O6K O22 C21 DOUBLE NONE 30
O6K C36 C20 SINGLE NONE 31
O6K N23 C24 SINGLE NONE 32
O6K N23 C19 SINGLE NONE 33
O6K C24 O26 DOUBLE NONE 34
O6K C21 C19 SINGLE NONE 35
O6K C21 N15 SINGLE NONE 36
O6K C20 N15 SINGLE NONE 37
O6K C20 C22 SINGLE BEGINDASH 38
O6K C19 C18 DOUBLE NONE 39
O6K N15 C16 SINGLE NONE 40
O6K C22 C29 SINGLE NONE 41
O6K C18 C17 SINGLE NONE 42
O6K C16 C17 DOUBLE NONE 43
O6K C30 C29 SINGLE NONE 44
O6K C30 C34 SINGLE NONE 45
O6K C29 C34 SINGLE NONE 46
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
O6K MurckoScaffold S1 scaffold 'O=C(C[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC1CC1)n1ccccc1=O)NCc1ccccc1' InChI=1S/C26H32N4O4/c31-23(28-17-19-6-2-1-3-7-19)16-21(15-20-11-12-27-25(20)33)29-26(34)22(14-18-9-10-18)30-13-5-4-8-24(30)32/h1-8,13,18,20-22H,9-12,14-17H2,(H,27,33)(H,28,31)(H,29,34)/t20-,21-,22-/m0/s1 PPURZJJWSJCRCM-FKBYEOEOSA-N
O6K amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
O6K cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
O6K peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
O6K phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
O6K pyridine F5 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
O6K C19 S1 1
O6K C21 S1 1
O6K O22 S1 1
O6K C18 S1 1
O6K C17 S1 1
O6K C16 S1 1
O6K N15 S1 1
O6K C20 S1 1
O6K C22 S1 1
O6K C29 S1 1
O6K C34 S1 1
O6K C30 S1 1
O6K C36 S1 1
O6K O37 S1 1
O6K N38 S1 1
O6K C40 S1 1
O6K C42 S1 1
O6K C45 S1 1
O6K C47 S1 1
O6K O48 S1 1
O6K N49 S1 1
O6K C51 S1 1
O6K C54 S1 1
O6K C57 S1 1
O6K C35 S1 1
O6K O41 S1 1
O6K N36 S1 1
O6K C13 S1 1
O6K C14 S1 1
O6K C28 S1 1
O6K C26 S1 1
O6K C25 S1 1
O6K C23 S1 1
O6K C15 S1 1
O6K N38 F1 1
O6K C36 F1 1
O6K O37 F1 1
O6K C20 F1 1
O6K N49 F1 2
O6K C47 F1 2
O6K O48 F1 2
O6K C45 F1 2
O6K N36 F1 3
O6K C35 F1 3
O6K O41 F1 3
O6K C57 F1 3
O6K C29 F2 1
O6K C30 F2 1
O6K C34 F2 1
O6K O37 F3 1
O6K C36 F3 1
O6K C20 F3 1
O6K N15 F3 1
O6K C14 F4 1
O6K C15 F4 1
O6K C23 F4 1
O6K C25 F4 1
O6K C26 F4 1
O6K C28 F4 1
O6K C21 F5 1
O6K C19 F5 1
O6K C18 F5 1
O6K C17 F5 1
O6K C16 F5 1
O6K N15 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id O6K
_pdbe_chem_comp_rdkit_properties.exactmw 595.301
_pdbe_chem_comp_rdkit_properties.amw 595.697
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 84
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.516
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 308.043
_pdbe_chem_comp_rdkit_properties.tpsa 167.860
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.689
_pdbe_chem_comp_rdkit_properties.CrippenMR 157.915
_pdbe_chem_comp_rdkit_properties.chi0v 20.594
_pdbe_chem_comp_rdkit_properties.chi1v 10.843
_pdbe_chem_comp_rdkit_properties.chi2v 4.305
_pdbe_chem_comp_rdkit_properties.chi3v 4.305
_pdbe_chem_comp_rdkit_properties.chi4v 2.550
_pdbe_chem_comp_rdkit_properties.chi0n 61.594
_pdbe_chem_comp_rdkit_properties.chi1n 31.040
_pdbe_chem_comp_rdkit_properties.chi2n 4.305
_pdbe_chem_comp_rdkit_properties.chi3n 4.305
_pdbe_chem_comp_rdkit_properties.chi4n 2.550
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.190
_pdbe_chem_comp_rdkit_properties.kappa1 8.091
_pdbe_chem_comp_rdkit_properties.kappa2 13.854
_pdbe_chem_comp_rdkit_properties.kappa3 9.146
_pdbe_chem_comp_rdkit_properties.Phi 2.607
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
O6K UniChem 'Guide to Pharmacology' 10720
O6K UniChem ChEBI 147409
O6K UniChem PubChem 146018708
O6K UniChem BindingDb 512616
O6K UniChem 'Probes And Drugs' PD127082
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
O6K O26 4.031 2.623 1.260 ETKDGv3 1
O6K C24 4.854 1.833 0.724 ETKDGv3 2
O6K O25 6.042 2.311 0.149 ETKDGv3 3
O6K C27 6.478 3.678 0.110 ETKDGv3 4
O6K C31 5.479 4.544 -0.681 ETKDGv3 5
O6K C32 6.663 4.230 1.537 ETKDGv3 6
O6K C33 7.834 3.702 -0.610 ETKDGv3 7
O6K N23 4.572 0.429 0.658 ETKDGv3 8
O6K C19 3.467 -0.204 1.328 ETKDGv3 9
O6K C21 2.741 -1.307 0.665 ETKDGv3 10
O6K O22 3.062 -1.652 -0.505 ETKDGv3 11
O6K C18 3.111 0.150 2.572 ETKDGv3 12
O6K C17 1.988 -0.509 3.260 ETKDGv3 13
O6K C16 1.305 -1.498 2.677 ETKDGv3 14
O6K N15 1.655 -1.967 1.354 ETKDGv3 15
O6K C20 0.830 -2.959 0.629 ETKDGv3 16
O6K C22 0.159 -3.987 1.564 ETKDGv3 17
O6K C29 -0.355 -5.202 0.774 ETKDGv3 18
O6K C34 0.611 -6.371 0.656 ETKDGv3 19
O6K C30 -0.577 -6.457 1.603 ETKDGv3 20
O6K C36 -0.187 -2.248 -0.228 ETKDGv3 21
O6K O37 -0.320 -2.584 -1.436 ETKDGv3 22
O6K N38 -0.997 -1.198 0.320 ETKDGv3 23
O6K C40 -1.693 -0.221 -0.521 ETKDGv3 24
O6K C42 -3.128 -0.704 -0.904 ETKDGv3 25
O6K C45 -4.093 -1.246 0.186 ETKDGv3 26
O6K C47 -3.534 -2.354 0.992 ETKDGv3 27
O6K O48 -3.206 -3.475 0.523 ETKDGv3 28
O6K N49 -3.439 -2.042 2.364 ETKDGv3 29
O6K C51 -3.920 -0.694 2.595 ETKDGv3 30
O6K C54 -4.531 -0.227 1.258 ETKDGv3 31
O6K C57 -1.596 1.188 0.116 ETKDGv3 32
O6K O40 -0.241 1.517 0.287 ETKDGv3 33
O6K C35 -2.250 2.234 -0.751 ETKDGv3 34
O6K O41 -3.259 2.856 -0.321 ETKDGv3 35
O6K N36 -1.742 2.507 -2.064 ETKDGv3 36
O6K C13 -2.562 3.136 -3.095 ETKDGv3 37
O6K C14 -3.640 2.185 -3.537 ETKDGv3 38
O6K C28 -3.337 1.120 -4.302 ETKDGv3 39
O6K C26 -4.383 0.139 -4.661 ETKDGv3 40
O6K C25 -5.634 0.300 -4.215 ETKDGv3 41
O6K C23 -5.974 1.461 -3.368 ETKDGv3 42
O6K C15 -5.031 2.356 -3.047 ETKDGv3 43
O6K H1 4.509 4.632 -0.151 ETKDGv3 44
O6K H2 5.879 5.571 -0.823 ETKDGv3 45
O6K H3 5.291 4.096 -1.681 ETKDGv3 46
O6K H4 7.120 5.242 1.508 ETKDGv3 47
O6K H5 7.324 3.558 2.125 ETKDGv3 48
O6K H6 5.693 4.315 2.068 ETKDGv3 49
O6K H7 8.571 3.073 -0.065 ETKDGv3 50
O6K H8 8.233 4.737 -0.676 ETKDGv3 51
O6K H9 7.731 3.296 -1.640 ETKDGv3 52
O6K H10 5.148 -0.145 0.002 ETKDGv3 53
O6K H11 3.656 0.917 3.105 ETKDGv3 54
O6K H12 1.710 -0.179 4.253 ETKDGv3 55
O6K H13 0.477 -1.933 3.220 ETKDGv3 56
O6K H14 1.504 -3.541 -0.040 ETKDGv3 57
O6K H15 -0.709 -3.529 2.085 ETKDGv3 58
O6K H16 0.891 -4.303 2.341 ETKDGv3 59
O6K H17 -1.061 -5.069 -0.074 ETKDGv3 60
O6K H18 1.591 -6.252 1.166 ETKDGv3 61
O6K H19 0.493 -6.971 -0.271 ETKDGv3 62
O6K H20 -0.302 -6.391 2.677 ETKDGv3 63
O6K H21 -1.396 -7.111 1.237 ETKDGv3 64
O6K H22 -1.017 -1.067 1.356 ETKDGv3 65
O6K H23 -1.136 -0.145 -1.483 ETKDGv3 66
O6K H24 -3.656 0.105 -1.451 ETKDGv3 67
O6K H25 -3.005 -1.518 -1.651 ETKDGv3 68
O6K H26 -5.003 -1.626 -0.331 ETKDGv3 69
O6K H27 -3.008 -2.657 3.090 ETKDGv3 70
O6K H28 -4.682 -0.694 3.403 ETKDGv3 71
O6K H29 -3.069 -0.044 2.888 ETKDGv3 72
O6K H30 -4.260 0.815 1.010 ETKDGv3 73
O6K H31 -5.640 -0.255 1.348 ETKDGv3 74
O6K H34 -0.800 2.143 -2.333 ETKDGv3 75
O6K H35 -2.997 4.083 -2.709 ETKDGv3 76
O6K H36 -1.923 3.399 -3.966 ETKDGv3 77
O6K H37 -2.322 0.958 -4.644 ETKDGv3 78
O6K H38 -4.131 -0.714 -5.278 ETKDGv3 79
O6K H39 -6.399 -0.421 -4.472 ETKDGv3 80
O6K H40 -6.986 1.585 -3.006 ETKDGv3 81
O6K H41 -5.287 3.201 -2.420 ETKDGv3 82
O6K H32 -2.080 1.170 1.114 ETKDGv3 83
O6K H33 -0.205 2.280 0.922 ETKDGv3 84
#