data_O01
#
_chem_comp.id O01
_chem_comp.name "[5-(2,4-dimethyl-1,3-thiazol-5-yl)-1H-pyrazol-3-yl]methanamine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H12 N4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 1-[3-(2,4-dimethyl-1,3-thiazol-5-yl)-1H-pyrazol-5-yl]methanamine
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-08-25
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 208.283
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code O01
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5P8W
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
O01 N3 N1 N 0 1 Y N N N N N -24.994 36.934 -26.364 -2.990 0.728 0.141 N3 O01 1
O01 C4 C1 C 0 1 Y N N N N N -24.628 35.682 -26.303 -3.188 -0.546 0.061 C4 O01 2
O01 C6 C2 C 0 1 N N N N N N -24.822 34.687 -27.403 -4.540 -1.210 0.099 C6 O01 3
O01 C7 C3 C 0 1 N N N N N N -25.028 39.055 -25.099 -1.369 2.605 0.174 C7 O01 4
O01 C8 C4 C 0 1 Y N N N N N -23.564 37.176 -22.934 0.636 0.337 -0.117 C8 O01 5
O01 C13 C5 C 0 1 N N N N N N -21.604 37.030 -19.819 4.124 -0.850 -0.432 C13 O01 6
O01 C1 C6 C 0 1 Y N N N N N -24.050 36.848 -24.249 -0.831 0.162 -0.037 C1 O01 7
O01 C11 C7 C 0 1 Y N N N N N -22.518 37.263 -20.986 2.812 -0.123 -0.294 C11 O01 8
O01 C12 C8 C 0 1 Y N N N N N -22.570 36.559 -22.200 1.588 -0.693 -0.252 C12 O01 9
O01 C2 C9 C 0 1 Y N N N N N -24.674 37.609 -25.202 -1.744 1.148 0.092 C2 O01 10
O01 N10 N2 N 0 1 Y N N N N N -23.424 38.259 -20.962 2.653 1.214 -0.191 N10 O01 11
O01 N14 N3 N 0 1 N N N N N N -22.250 36.092 -18.856 4.701 -1.076 0.900 N14 O01 12
O01 N9 N4 N 0 1 Y N N N N N -24.056 38.175 -22.167 1.283 1.484 -0.081 N9 O01 13
O01 S5 S1 S 0 1 Y N N N N N -23.838 35.237 -24.835 -1.699 -1.371 -0.093 S5 O01 14
O01 H1 H1 H 0 1 N N N N N N -25.315 35.175 -28.257 -4.931 -1.296 -0.915 H1 O01 15
O01 H2 H2 H 0 1 N N N N N N -23.844 34.295 -27.719 -4.444 -2.204 0.537 H2 O01 16
O01 H3 H3 H 0 1 N N N N N N -25.449 33.859 -27.042 -5.222 -0.611 0.702 H3 O01 17
O01 H4 H4 H 0 1 N N N N N N -25.522 39.379 -26.027 -1.214 2.883 1.216 H4 O01 18
O01 H5 H5 H 0 1 N N N N N N -25.710 39.206 -24.249 -0.451 2.776 -0.388 H5 O01 19
O01 H6 H6 H 0 1 N N N N N N -24.113 39.646 -24.945 -2.171 3.211 -0.248 H6 O01 20
O01 H7 H7 H 0 1 N N N N N N -20.659 36.595 -20.176 3.958 -1.809 -0.923 H7 O01 21
O01 H8 H8 H 0 1 N N N N N N -21.400 37.987 -19.317 4.811 -0.251 -1.029 H8 O01 22
O01 H9 H9 H 0 1 N N N N N N -21.963 35.716 -22.496 1.378 -1.751 -0.311 H9 O01 23
O01 H10 H10 H 0 1 N N N N N N -23.595 38.913 -20.225 3.364 1.874 -0.193 H10 O01 24
O01 H11 H11 H 0 1 N N N N N N -21.639 35.938 -18.079 5.583 -1.563 0.834 H11 O01 25
O01 H12 H12 H 0 1 N N N N N N -23.109 36.487 -18.531 4.805 -0.206 1.401 H12 O01 26
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
O01 C6 C4 SING N N 1
O01 N3 C4 DOUB Y N 2
O01 N3 C2 SING Y N 3
O01 C4 S5 SING Y N 4
O01 C2 C7 SING N N 5
O01 C2 C1 DOUB Y N 6
O01 S5 C1 SING Y N 7
O01 C1 C8 SING N N 8
O01 C8 C12 SING Y N 9
O01 C8 N9 DOUB Y N 10
O01 C12 C11 DOUB Y N 11
O01 N9 N10 SING Y N 12
O01 C11 N10 SING Y N 13
O01 C11 C13 SING N N 14
O01 C13 N14 SING N N 15
O01 C6 H1 SING N N 16
O01 C6 H2 SING N N 17
O01 C6 H3 SING N N 18
O01 C7 H4 SING N N 19
O01 C7 H5 SING N N 20
O01 C7 H6 SING N N 21
O01 C13 H7 SING N N 22
O01 C13 H8 SING N N 23
O01 C12 H9 SING N N 24
O01 N10 H10 SING N N 25
O01 N14 H11 SING N N 26
O01 N14 H12 SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
O01 SMILES ACDLabs 12.01 n2c(sc(c1cc(CN)nn1)c2C)C
O01 InChI InChI 1.03 InChI=1S/C9H12N4S/c1-5-9(14-6(2)11-5)8-3-7(4-10)12-13-8/h3H,4,10H2,1-2H3,(H,12,13)
O01 InChIKey InChI 1.03 IPDYKGULJOZYNW-UHFFFAOYSA-N
O01 SMILES_CANONICAL CACTVS 3.385 Cc1sc(c(C)n1)c2cc(CN)[nH]n2
O01 SMILES CACTVS 3.385 Cc1sc(c(C)n1)c2cc(CN)[nH]n2
O01 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 Cc1c(sc(n1)C)c2cc([nH]n2)CN
O01 SMILES "OpenEye OEToolkits" 1.7.6 Cc1c(sc(n1)C)c2cc([nH]n2)CN
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
O01 "SYSTEMATIC NAME" ACDLabs 12.01 1-[3-(2,4-dimethyl-1,3-thiazol-5-yl)-1H-pyrazol-5-yl]methanamine
O01 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[3-(2,4-dimethyl-1,3-thiazol-5-yl)-1H-pyrazol-5-yl]methanamine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
O01 'Create component' 2016-08-25 RCSB
O01 'Initial release' 2016-09-07 RCSB
O01 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id O01
_pdbx_chem_comp_synonyms.name 1-[3-(2,4-dimethyl-1,3-thiazol-5-yl)-1H-pyrazol-5-yl]methanamine
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id O01
_pdbe_chem_comp_synonyms.name '1-[3-(2,4-dimethyl-1,3-thiazol-5-yl)-1H-pyrazol-5-yl]methanamine'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
O01 N3 N 11.235 1.748 1
O01 C4 C 10.021 2.630 2
O01 C6 C 10.021 4.130 3
O01 C7 C 11.653 -0.892 4
O01 C8 C 8.389 -0.892 5
O01 C13 C 4.999 -2.782 6
O01 C1 C 9.271 0.322 7
O01 C11 C 6.426 -2.318 8
O01 C12 C 6.889 -0.892 9
O01 C2 C 10.771 0.322 10
O01 N10 N 7.639 -3.200 11
O01 N14 N 3.884 -1.778 12
O01 N9 N 8.853 -2.318 13
O01 S5 S 8.807 1.748 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
O01 C6 C4 SINGLE NONE 1
O01 N3 C4 DOUBLE NONE 2
O01 N3 C2 SINGLE NONE 3
O01 C4 S5 SINGLE NONE 4
O01 C2 C7 SINGLE NONE 5
O01 C2 C1 DOUBLE NONE 6
O01 S5 C1 SINGLE NONE 7
O01 C1 C8 SINGLE NONE 8
O01 C8 C12 SINGLE NONE 9
O01 C8 N9 DOUBLE NONE 10
O01 C12 C11 DOUBLE NONE 11
O01 N9 N10 SINGLE NONE 12
O01 C11 N10 SINGLE NONE 13
O01 C11 C13 SINGLE NONE 14
O01 C13 N14 SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
O01 MurckoScaffold S1 scaffold 'c1cc(-c2cncs2)n[nH]1' InChI=1S/C6H5N3S/c1-2-8-9-5(1)6-3-7-4-10-6/h1-4H,(H,8,9) HKFZUTDLZPFEPO-UHFFFAOYSA-N
O01 pyrazole F1 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
O01 thiazole F2 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
O01 N3 S1 1
O01 C4 S1 1
O01 C8 S1 1
O01 C1 S1 1
O01 C11 S1 1
O01 C12 S1 1
O01 C2 S1 1
O01 N10 S1 1
O01 N9 S1 1
O01 S5 S1 1
O01 C8 F1 1
O01 C12 F1 1
O01 C11 F1 1
O01 N10 F1 1
O01 N9 F1 1
O01 C1 F2 1
O01 C2 F2 1
O01 N3 F2 1
O01 C4 F2 1
O01 S5 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id O01
_pdbe_chem_comp_rdkit_properties.exactmw 208.078
_pdbe_chem_comp_rdkit_properties.amw 208.290
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 26
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 103.214
_pdbe_chem_comp_rdkit_properties.tpsa 67.590
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.065
_pdbe_chem_comp_rdkit_properties.CrippenMR 54.941
_pdbe_chem_comp_rdkit_properties.chi0v 7.514
_pdbe_chem_comp_rdkit_properties.chi1v 4.293
_pdbe_chem_comp_rdkit_properties.chi2v 2.310
_pdbe_chem_comp_rdkit_properties.chi3v 2.310
_pdbe_chem_comp_rdkit_properties.chi4v 1.556
_pdbe_chem_comp_rdkit_properties.chi0n 18.697
_pdbe_chem_comp_rdkit_properties.chi1n 9.318
_pdbe_chem_comp_rdkit_properties.chi2n 1.435
_pdbe_chem_comp_rdkit_properties.chi3n 1.435
_pdbe_chem_comp_rdkit_properties.chi4n 0.895
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.200
_pdbe_chem_comp_rdkit_properties.kappa1 2.678
_pdbe_chem_comp_rdkit_properties.kappa2 3.511
_pdbe_chem_comp_rdkit_properties.kappa3 1.558
_pdbe_chem_comp_rdkit_properties.Phi 0.671
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
O01 UniChem ZINC ZINC000584905638
O01 UniChem PubChem 121595996
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
O01 N3 3.145 0.798 0.024 ETKDGv3 1
O01 C4 3.559 -0.359 0.430 ETKDGv3 2
O01 C6 4.987 -0.643 0.746 ETKDGv3 3
O01 C7 1.112 2.083 -0.795 ETKDGv3 4
O01 C8 -0.328 -0.660 -0.354 ETKDGv3 5
O01 C13 -3.952 -0.003 -0.626 ETKDGv3 6
O01 C1 1.097 -0.348 -0.115 ETKDGv3 7
O01 C11 -2.529 -0.478 -0.610 ETKDGv3 8
O01 C12 -1.460 0.278 -0.415 ETKDGv3 9
O01 C2 1.741 0.822 -0.291 ETKDGv3 10
O01 N10 -2.138 -1.840 -0.650 ETKDGv3 11
O01 N14 -4.514 0.014 0.722 ETKDGv3 12
O01 N9 -0.753 -1.877 -0.477 ETKDGv3 13
O01 S5 2.267 -1.576 0.436 ETKDGv3 14
O01 H1 5.467 0.255 1.189 ETKDGv3 15
O01 H2 5.523 -0.924 -0.184 ETKDGv3 16
O01 H3 5.053 -1.480 1.472 ETKDGv3 17
O01 H4 0.510 2.551 0.010 ETKDGv3 18
O01 H5 1.903 2.801 -1.098 ETKDGv3 19
O01 H6 0.482 1.875 -1.685 ETKDGv3 20
O01 H7 -4.006 1.018 -1.062 ETKDGv3 21
O01 H8 -4.557 -0.679 -1.268 ETKDGv3 22
O01 H9 -1.466 1.348 -0.265 ETKDGv3 23
O01 H10 -2.755 -2.677 -0.737 ETKDGv3 24
O01 H11 -3.936 0.648 1.320 ETKDGv3 25
O01 H12 -4.451 -0.949 1.126 ETKDGv3 26
#