data_NNV
#
_chem_comp.id NNV
_chem_comp.name "(1R,5aS,6R)-1,2,5,5a,6,7-hexahydrophenazine-1,6-dicarboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H14 N2 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-10-24
_chem_comp.pdbx_modified_date 2013-08-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 274.272
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NNV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4HMT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NNV C01 C01 C 0 1 N N N N N N 16.361 -3.200 -6.416 2.727 2.067 -0.737 C01 NNV 1
NNV C02 C02 C 0 1 N N N N N N 17.664 -2.929 -5.836 3.143 0.838 -1.499 C02 NNV 2
NNV C03 C03 C 0 1 N N R N N N 18.341 -1.592 -6.071 2.730 -0.417 -0.733 C03 NNV 3
NNV C04 C04 C 0 1 N N N N N N 17.542 -0.628 -6.882 1.266 -0.332 -0.362 C04 NNV 4
NNV N05 N05 N 0 1 N N N N N N 18.049 0.698 -7.043 0.530 -1.453 -0.419 N05 NNV 5
NNV C06 C06 C 0 1 N N N N N N 17.287 1.666 -7.764 -0.725 -1.490 -0.086 C06 NNV 6
NNV C07 C07 C 0 1 N N N N N N 17.849 3.006 -7.930 -1.556 -2.678 -0.256 C07 NNV 7
NNV C08 C08 C 0 1 N N N N N N 17.009 3.998 -8.573 -2.883 -2.562 -0.227 C08 NNV 8
NNV C09 C09 C 0 1 N N N N N N 15.687 3.700 -9.084 -3.590 -1.257 -0.012 C09 NNV 9
NNV C10 C10 C 0 1 N N S N N N 16.078 1.309 -8.379 -1.372 -0.243 0.486 C10 NNV 10
NNV C11 C11 C 0 1 N N R N N N 15.351 2.270 -9.262 -2.674 -0.066 -0.295 C11 NNV 11
NNV C12 C12 C 0 1 N N N N N N 15.528 1.836 -10.746 -3.354 1.207 0.141 C12 NNV 12
NNV O13 O13 O 0 1 N N N N N N 14.778 2.355 -11.666 -2.843 1.906 0.984 O13 NNV 13
NNV O14 O14 O 0 1 N N N N N N 16.362 0.944 -11.147 -4.526 1.563 -0.407 O14 NNV 14
NNV C15 C15 C 0 1 N N N N N N 16.221 -0.888 -7.379 0.744 0.874 -0.011 C15 NNV 15
NNV C16 C16 C 0 1 N N N N N N 15.573 -2.215 -7.161 1.596 2.071 -0.034 C16 NNV 16
NNV N17 N17 N 0 1 N N N N N N 15.565 0.074 -8.056 -0.588 0.997 0.391 N17 NNV 17
NNV C18 C18 C 0 1 N N N N N N 19.731 -1.744 -6.597 3.557 -0.533 0.522 C18 NNV 18
NNV O19 O19 O 0 1 N N N N N N 20.603 -1.987 -5.705 4.893 -0.629 0.438 O19 NNV 19
NNV O20 O20 O 0 1 N N N N N N 19.959 -1.678 -7.864 3.017 -0.540 1.603 O20 NNV 20
NNV H011 H011 H 0 0 N N N N N N 15.947 -4.189 -6.290 3.351 2.948 -0.756 H011 NNV 21
NNV H022 H022 H 0 0 N N N N N N 17.555 -3.042 -4.747 2.662 0.839 -2.477 H022 NNV 22
NNV H021 H021 H 0 0 N N N N N N 18.348 -3.701 -6.218 4.225 0.840 -1.628 H021 NNV 23
NNV H031 H031 H 0 0 N N N N N N 18.445 -1.134 -5.076 2.895 -1.294 -1.358 H031 NNV 24
NNV H071 H071 H 0 0 N N N N N N 18.845 3.246 -7.589 -1.098 -3.644 -0.404 H071 NNV 25
NNV H081 H081 H 0 0 N N N N N N 17.386 5.005 -8.675 -3.479 -3.453 -0.365 H081 NNV 26
NNV H092 H092 H 0 0 N N N N N N 15.590 4.190 -10.064 -4.453 -1.207 -0.676 H092 NNV 27
NNV H091 H091 H 0 0 N N N N N N 14.955 4.130 -8.385 -3.933 -1.204 1.021 H091 NNV 28
NNV H101 H101 H 0 0 N N N N N N 16.614 0.887 -9.242 -1.609 -0.424 1.534 H101 NNV 29
NNV H111 H111 H 0 0 N N N N N N 14.280 2.161 -9.037 -2.457 -0.018 -1.362 H111 NNV 30
NNV H1 H1 H 0 1 N N N N N N 16.271 0.824 -12.085 -4.924 2.388 -0.096 H1 NNV 31
NNV H161 H161 H 0 0 N N N N N N 14.582 -2.436 -7.530 1.301 2.955 0.511 H161 NNV 32
NNV H171 H171 H 0 0 N N N N N N 14.741 0.261 -7.521 -0.978 1.860 0.599 H171 NNV 33
NNV H2 H2 H 0 1 N N N N N N 21.450 -2.113 -6.116 5.381 -0.701 1.270 H2 NNV 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NNV O13 C12 DOUB N N 1
NNV O14 C12 SING N N 2
NNV C12 C11 SING N N 3
NNV C11 C09 SING N N 4
NNV C11 C10 SING N N 5
NNV C09 C08 SING N N 6
NNV C08 C07 DOUB N N 7
NNV C10 N17 SING N N 8
NNV C10 C06 SING N N 9
NNV N17 C15 SING N N 10
NNV C07 C06 SING N N 11
NNV O20 C18 DOUB N N 12
NNV C06 N05 DOUB N N 13
NNV C15 C16 SING N N 14
NNV C15 C04 DOUB N N 15
NNV C16 C01 DOUB N N 16
NNV N05 C04 SING N N 17
NNV C04 C03 SING N N 18
NNV C18 C03 SING N N 19
NNV C18 O19 SING N N 20
NNV C01 C02 SING N N 21
NNV C03 C02 SING N N 22
NNV C01 H011 SING N N 23
NNV C02 H022 SING N N 24
NNV C02 H021 SING N N 25
NNV C03 H031 SING N N 26
NNV C07 H071 SING N N 27
NNV C08 H081 SING N N 28
NNV C09 H092 SING N N 29
NNV C09 H091 SING N N 30
NNV C10 H101 SING N N 31
NNV C11 H111 SING N N 32
NNV O14 H1 SING N N 33
NNV C16 H161 SING N N 34
NNV N17 H171 SING N N 35
NNV O19 H2 SING N N 36
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NNV SMILES ACDLabs 12.01 O=C(O)C3C=2N=C1C=CCC(C(=O)O)C1NC=2C=CC3
NNV InChI InChI 1.03 InChI=1S/C14H14N2O4/c17-13(18)7-3-1-5-9-11(7)16-10-6-2-4-8(14(19)20)12(10)15-9/h1-2,5-8,11,16H,3-4H2,(H,17,18)(H,19,20)/t7-,8-,11+/m1/s1
NNV InChIKey InChI 1.03 FXTPBWZKMDQSSJ-XLDPMVHQSA-N
NNV SMILES_CANONICAL CACTVS 3.370 OC(=O)[C@@H]1CC=CC2=NC3=C(N[C@@H]12)C=CC[C@H]3C(O)=O
NNV SMILES CACTVS 3.370 OC(=O)[CH]1CC=CC2=NC3=C(N[CH]12)C=CC[CH]3C(O)=O
NNV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C1C=CC2=NC3=C(C=CC[C@H]3C(=O)O)NC2[C@@H]1C(=O)O
NNV SMILES "OpenEye OEToolkits" 1.7.6 C1C=CC2=NC3=C(C=CCC3C(=O)O)NC2C1C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NNV "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,5aS,6R)-1,2,5,5a,6,7-hexahydrophenazine-1,6-dicarboxylic acid"
NNV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1R,6R)-1,2,5,5a,6,7-hexahydrophenazine-1,6-dicarboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NNV 'Create component' 2012-10-24 PDBJ
NNV 'Initial release' 2013-08-07 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NNV C01 C 3.000 0.781 1
NNV C02 C 3.000 -0.781 2
NNV C03 C 4.359 -1.552 3
NNV C04 C 5.700 -0.750 4
NNV N05 N 6.999 -1.500 5
NNV C06 C 8.298 -0.750 6
NNV C07 C 9.639 -1.552 7
NNV C08 C 10.998 -0.781 8
NNV C09 C 10.998 0.781 9
NNV C10 C 8.298 0.750 10
NNV C11 C 9.639 1.552 11
NNV C12 C 9.622 3.052 12
NNV O13 O 10.912 3.817 13
NNV O14 O 8.314 3.787 14
NNV C15 C 5.700 0.750 15
NNV C16 C 4.359 1.552 16
NNV N17 N 6.999 1.500 17
NNV C18 C 4.376 -3.052 18
NNV O19 O 5.684 -3.787 19
NNV O20 O 3.086 -3.817 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NNV O13 C12 DOUBLE NONE 1
NNV O14 C12 SINGLE NONE 2
NNV C11 C12 SINGLE BEGINDASH 3
NNV C11 C09 SINGLE NONE 4
NNV C11 C10 SINGLE NONE 5
NNV C09 C08 SINGLE NONE 6
NNV C08 C07 DOUBLE NONE 7
NNV C10 N17 SINGLE NONE 8
NNV C10 C06 SINGLE NONE 9
NNV N17 C15 SINGLE NONE 10
NNV C07 C06 SINGLE NONE 11
NNV O20 C18 DOUBLE NONE 12
NNV C06 N05 DOUBLE NONE 13
NNV C15 C16 SINGLE NONE 14
NNV C15 C04 DOUBLE NONE 15
NNV C16 C01 DOUBLE NONE 16
NNV N05 C04 SINGLE NONE 17
NNV C04 C03 SINGLE NONE 18
NNV C03 C18 SINGLE BEGINDASH 19
NNV C18 O19 SINGLE NONE 20
NNV C01 C02 SINGLE NONE 21
NNV C03 C02 SINGLE NONE 22
#
_pdbe_chem_comp_substructure.comp_id NNV
_pdbe_chem_comp_substructure.substructure_name MurckoScaffold
_pdbe_chem_comp_substructure.id S1
_pdbe_chem_comp_substructure.substructure_type scaffold
_pdbe_chem_comp_substructure.substructure_smiles 'C1=CC2=C(CC1)N=C1C=CCC[C@@H]1N2'
_pdbe_chem_comp_substructure.substructure_inchis
InChI=1S/C12H14N2/c1-2-6-10-9(5-1)13-11-7-3-4-8-12(11)14-10/h1,4-5,8,10,14H,2-3,6-7H2/t10-/m0/s1
_pdbe_chem_comp_substructure.substructure_inchikeys DVSWYHHMOCCXFQ-JTQLQIEISA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NNV C01 S1 1
NNV C02 S1 1
NNV C03 S1 1
NNV C04 S1 1
NNV N05 S1 1
NNV C06 S1 1
NNV C07 S1 1
NNV C08 S1 1
NNV C09 S1 1
NNV C10 S1 1
NNV C11 S1 1
NNV C15 S1 1
NNV C16 S1 1
NNV N17 S1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id NNV
_pdbe_chem_comp_rdkit_properties.exactmw 274.095
_pdbe_chem_comp_rdkit_properties.amw 274.276
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.357
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 134.655
_pdbe_chem_comp_rdkit_properties.tpsa 98.990
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.932
_pdbe_chem_comp_rdkit_properties.CrippenMR 71.150
_pdbe_chem_comp_rdkit_properties.chi0v 9.527
_pdbe_chem_comp_rdkit_properties.chi1v 5.211
_pdbe_chem_comp_rdkit_properties.chi2v 2.514
_pdbe_chem_comp_rdkit_properties.chi3v 2.514
_pdbe_chem_comp_rdkit_properties.chi4v 1.678
_pdbe_chem_comp_rdkit_properties.chi0n 23.527
_pdbe_chem_comp_rdkit_properties.chi1n 11.975
_pdbe_chem_comp_rdkit_properties.chi2n 2.514
_pdbe_chem_comp_rdkit_properties.chi3n 2.514
_pdbe_chem_comp_rdkit_properties.chi4n 1.678
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.370
_pdbe_chem_comp_rdkit_properties.kappa1 4.311
_pdbe_chem_comp_rdkit_properties.kappa2 4.628
_pdbe_chem_comp_rdkit_properties.kappa3 1.930
_pdbe_chem_comp_rdkit_properties.Phi 0.997
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NNV UniChem ZINC ZINC000085589516
NNV UniChem SureChEMBL SCHEMBL14652348
NNV UniChem PubChem 71234588
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NNV C01 3.320 -0.590 -1.499 ETKDGv3 1
NNV C02 3.606 -1.392 -0.256 ETKDGv3 2
NNV C03 2.789 -0.894 0.957 ETKDGv3 3
NNV C04 1.363 -0.575 0.571 ETKDGv3 4
NNV N05 0.324 -0.696 1.554 ETKDGv3 5
NNV C06 -0.889 -0.272 1.354 ETKDGv3 6
NNV C07 -1.920 -0.521 2.375 ETKDGv3 7
NNV C08 -3.208 -0.263 2.129 ETKDGv3 8
NNV C09 -3.667 0.398 0.853 ETKDGv3 9
NNV C10 -1.250 0.497 0.097 ETKDGv3 10
NNV C11 -2.696 0.144 -0.321 ETKDGv3 11
NNV C12 -3.137 0.931 -1.526 ETKDGv3 12
NNV O13 -3.105 2.191 -1.513 ETKDGv3 13
NNV O14 -3.592 0.262 -2.659 ETKDGv3 14
NNV C15 1.061 -0.152 -0.670 ETKDGv3 15
NNV C16 2.108 -0.069 -1.709 ETKDGv3 16
NNV N17 -0.291 0.210 -0.978 ETKDGv3 17
NNV C18 3.432 0.316 1.578 ETKDGv3 18
NNV O19 3.468 1.524 0.886 ETKDGv3 19
NNV O20 3.953 0.235 2.722 ETKDGv3 20
NNV H011 4.079 -0.509 -2.266 ETKDGv3 21
NNV H022 3.331 -2.449 -0.463 ETKDGv3 22
NNV H021 4.695 -1.367 -0.035 ETKDGv3 23
NNV H031 2.771 -1.712 1.712 ETKDGv3 24
NNV H071 -1.640 -0.977 3.317 ETKDGv3 25
NNV H081 -3.942 -0.471 2.897 ETKDGv3 26
NNV H092 -3.756 1.489 1.046 ETKDGv3 27
NNV H091 -4.675 0.011 0.591 ETKDGv3 28
NNV H101 -1.191 1.581 0.337 ETKDGv3 29
NNV H111 -2.734 -0.940 -0.578 ETKDGv3 30
NNV H1 -3.894 0.775 -3.478 ETKDGv3 31
NNV H161 1.897 0.432 -2.645 ETKDGv3 32
NNV H171 -0.515 0.509 -1.953 ETKDGv3 33
NNV H2 3.903 2.343 1.293 ETKDGv3 34
#